tforce right libraries on blaslapack, get rid of patch - petsc-git-PKGBUILD - build template for non-complex PETSC with petsc4py
(HTM) git clone git://src.adamsgaard.dk/petsc-git-PKGBUILD
(DIR) Log
(DIR) Files
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---
(DIR) commit ba7c6d190a7031dda17dc1e84ab392013980e7c1
(DIR) parent eb332664bd9e49033b865c024e616dd82db8c0d9
(HTM) Author: eDgar <eDgar_|at|_openmail.cc>
Date: Tue, 21 Sep 2021 19:31:08 -0500
force right libraries on blaslapack, get rid of patch
Diffstat:
M .SRCINFO | 4 +---
M .gitignore | 1 +
M PKGBUILD | 13 +++----------
D blaslapack_download.patch | 11 -----------
M test_optdepends.sh | 15 +++++++++++----
5 files changed, 16 insertions(+), 28 deletions(-)
---
(DIR) diff --git a/.SRCINFO b/.SRCINFO
t@@ -1,6 +1,6 @@
pkgbase = petsc-git
pkgdesc = Portable, extensible toolkit for scientific computation
- pkgver = 3.15.4.31.g36206f8ec7e
+ pkgver = 3.15.4.33.g0bac13e0fe9
pkgrel = 1
url = https://gitlab.com/petsc/petsc
arch = i686
t@@ -28,11 +28,9 @@ pkgbase = petsc-git
source = git+https://gitlab.com/petsc/petsc.git#branch=release
source = https://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-with-docs-3.15.4.tar.gz
source = test_optdepends.sh
- source = blaslapack_download.patch
sha512sums = SKIP
sha512sums = b6a1d48aab1c2639a4c1cbd8b313ace253f1c36eedaa3de3508ffbd6060e1def99e2f516ed9bb509307f614b41791d09342e2c2280c0b2c25dda1092b0e569d2
sha512sums = 4561205ad12cb1f0031ad4cfcf2117a909002c475a992eede429b8af0e06df44baf1ce9caa95413593a1710b688e5d9c75a3b896b8c428a3cc04ae38324faae5
- sha512sums = af899ea1d06bf6d4cee1c1fe86902ba2772d1001caf00e89363c6217fed9dd837588ee6f7f827ca8b8fd2a01316fbcd73d98874e28d452af71b9598127b6f179
pkgname = petsc-git
optdepends = boost: Free peer-reviewed portable C++ source libraries
(DIR) diff --git a/.gitignore b/.gitignore
t@@ -7,3 +7,4 @@ src
*.tar.gz
petsc
+clean-configure.sh
(DIR) diff --git a/PKGBUILD b/PKGBUILD
t@@ -5,7 +5,7 @@
_base=petsc
pkgname=("${_base}"-git "${_base}"-doc)
-pkgver=3.15.4.31.g36206f8ec7e
+pkgver=3.15.4.33.g0bac13e0fe9
pkgrel=1
_mainver="${pkgver:0:6}"
pkgdesc="Portable, extensible toolkit for scientific computation"
t@@ -19,12 +19,10 @@ makedepends=('gcc' 'gcc-fortran' 'cmake' 'sowing' "pkgconf"
'git' 'cython' 'chrpath' "hypre=2.18.2")
source=(git+${url}.git#branch=release
https://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-with-docs-"${_mainver}".tar.gz
- test_optdepends.sh
- blaslapack_download.patch)
+ test_optdepends.sh)
sha512sums=('SKIP'
'b6a1d48aab1c2639a4c1cbd8b313ace253f1c36eedaa3de3508ffbd6060e1def99e2f516ed9bb509307f614b41791d09342e2c2280c0b2c25dda1092b0e569d2'
- '4561205ad12cb1f0031ad4cfcf2117a909002c475a992eede429b8af0e06df44baf1ce9caa95413593a1710b688e5d9c75a3b896b8c428a3cc04ae38324faae5'
- 'af899ea1d06bf6d4cee1c1fe86902ba2772d1001caf00e89363c6217fed9dd837588ee6f7f827ca8b8fd2a01316fbcd73d98874e28d452af71b9598127b6f179')
+ '4561205ad12cb1f0031ad4cfcf2117a909002c475a992eede429b8af0e06df44baf1ce9caa95413593a1710b688e5d9c75a3b896b8c428a3cc04ae38324faae5')
_config=linux-c-opt
_install_dir="/usr"
t@@ -89,10 +87,6 @@ export OMPI_MCA_opal_cuda_support=0
unset PETSC_DIR
export PETSC_ARCH=${_config}
-prepare() {
- patch -p1 -i blaslapack_download.patch
-}
-
pkgver() {
cd "${srcdir}"/"${_base}"
git describe --tags --match '*.*' | tr '-' '.' | sed 's-^v--'
t@@ -129,7 +123,6 @@ build() {
cd "${srcdir}"/"${_base}"
python ./configure ${CONFOPTS[@]}
-
make -s ${MAKEFLAGS} all
}
(DIR) diff --git a/blaslapack_download.patch b/blaslapack_download.patch
t@@ -1,11 +0,0 @@
---- b/petsc/config/BuildSystem/config/packages/BlasLapack.py 2021-09-17 23:26:42.115594175 -0500
-+++ b/petsc/config/BuildSystem/config/packages/BlasLapack.py 2021-09-17 22:53:07.122154127 -0500
-@@ -187,7 +187,7 @@
- yield ('OpenBLAS with full path', None, os.path.join(self.openblas.libDir,'libopenblas.a'),self.openblas.known64,self.openblas.usesopenmp)
- else:
- yield ('OpenBLAS', None, self.openblas.lib,self.openblas.known64,self.openblas.usesopenmp)
-- raise RuntimeError('--download-openblas libraries cannot be used')
-+ ###raise RuntimeError('--download-openblas libraries cannot be used')
- if 'with-blas-lib' in self.argDB and not 'with-lapack-lib' in self.argDB:
- raise RuntimeError('If you use the --with-blas-lib=<lib> you must also use --with-lapack-lib=<lib> option')
- if not 'with-blas-lib' in self.argDB and 'with-lapack-lib' in self.argDB:
(DIR) diff --git a/test_optdepends.sh b/test_optdepends.sh
t@@ -126,11 +126,18 @@ if [ -f "$(whereis -b libpnetcdf.so | cut -d' ' -f2)" ]; then
fi
# OpenBLAS: Linear algebra libraries
-OPENBLAS_SO="$(whereis -b libblas.so | cut -d' ' -f2)"
-if [ -f "${OPENBLAS_SO}" ]; then
+BLAS_SO="$(whereis -b libblas.so | cut -d' ' -f2)"
+OPENBLAS_SO="$(whereis -b libopenblas.so | cut -d' ' -f2)"
+LAPACK_SO="$(whereis -b liblapack.so | cut -d' ' -f2)"
+if [ -f "${BLAS_SO}" && \-f "${OPENBLAS_SO}" && \
+ -f "${LAPACK_SO}"]; then
CONFOPTS+=" --with-openblas=1"
- CONFOPTS+=" --with-openblas-pkg-config="
- CONFOPTS+="$(dirname $(pkgconf --path openblas))"
+ CONFOPTS+=" --with-openblas-lib=${OPENBLAS_SO}"
+ CONFOPTS+=" --with-openblas-include=/usr/include"
+ # With help from Satish Balay
+ # @ 3.15.4.33.g0bac13e0fe9 2021-09-21
+ # nm -AoD /usr/lib64/libopenblas.so | grep dgetrs_
+ CONFOPTS+=" --with-blaslapack-lib=${LAPACK_SO},${BLAS_SO}"
fi
# OpenCL: GPU computing