tUpdate - petsc-git-PKGBUILD - build template for non-complex PETSC with petsc4py
(HTM) git clone git://src.adamsgaard.dk/petsc-git-PKGBUILD
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---
(DIR) commit 483c0558a92ca886d9cbaec70948f088f8563101
(DIR) parent cafb49e666e6c55f288cd469460186b0f99e52e1
(HTM) Author: Lucas Heitzmann Gabrielli <heitzmann@gmail.com>
Date: Tue, 18 May 2021 17:57:48 -0300
Update
Diffstat:
M .SRCINFO | 4 +---
M PKGBUILD | 52 +++++++++----------------------
D petsc4py.patch | 11 -----------
3 files changed, 15 insertions(+), 52 deletions(-)
---
(DIR) diff --git a/.SRCINFO b/.SRCINFO
t@@ -1,6 +1,6 @@
pkgbase = petsc-git
pkgdesc = Portable, extensible toolkit for scientific computation (external downloads enabled)
- pkgver = 20210204
+ pkgver = 20210515
pkgrel = 1
url = https://gitlab.com/petsc/petsc
install = petsc.install
t@@ -35,9 +35,7 @@ pkgbase = petsc-git
provides = petsc
conflicts = petsc
source = petsc::git+https://gitlab.com/petsc/petsc.git#branch=release
- source = petsc4py.patch
sha256sums = SKIP
- sha256sums = b0f4a9d33e9c3ba3f51b81808f04ec66091b0a29cf99cac6392e97232edec768
pkgname = petsc-git
(DIR) diff --git a/PKGBUILD b/PKGBUILD
t@@ -1,7 +1,7 @@
# Maintainer: Lucas H. Gabrielli <heitzmann@gmail.com>
pkgname=petsc-git
-pkgver=20210204
+pkgver=20210515
pkgrel=1
_config=linux-c-opt
pkgdesc="Portable, extensible toolkit for scientific computation (external downloads enabled)"
t@@ -19,10 +19,8 @@ optdepends=("opencl: GPU computing"
"libyaml: YAML configuration support"
"libx11: GUI tools")
install=petsc.install
-source=(petsc::git+https://gitlab.com/petsc/petsc.git#branch=release
- petsc4py.patch)
-sha256sums=('SKIP'
- 'b0f4a9d33e9c3ba3f51b81808f04ec66091b0a29cf99cac6392e97232edec768')
+source=(petsc::git+https://gitlab.com/petsc/petsc.git#branch=release)
+sha256sums=('SKIP')
_petsc_arch="arch-${_config}"
_petsc_dir='/usr/local/petsc'
t@@ -52,7 +50,6 @@ pkgver() {
prepare() {
cd "${srcdir}/petsc"
sed -i 's-\(self.publicInstall[^=]*=[[:space:]]\)[^#]*-\10 -g' config/BuildSystem/config/package.py
- patch -p1 < ../petsc4py.patch
}
t@@ -96,7 +93,6 @@ build() {
--download-mumps=1
--download-scalapack=1
--download-hypre=1
- --download-petsc4py=1
)
CONFOPTS=( "${CONFOPTS[@]}" )
t@@ -135,10 +131,10 @@ build() {
export PETSC_ARCH="${_petsc_arch}"
python ./configure LDFLAGS="$LDFLAGS" \
- --prefix="${_petsc_dir}/${_config}" \
+ --prefix="${_install_dir}" \
--MAKEFLAGS="$MAKEFLAGS" \
$(for (( i=1; i<=${#CONFOPTS[@]}; i++)); do echo "${CONFOPTS[$i]}"; done)
- make clean
+
make all
}
t@@ -152,19 +148,24 @@ package() {
make DESTDIR="${pkgdir}" install
- # Fix petsc4py runpath
- chrpath -r "${_install_dir}/lib:/usr/lib/openmpi" ${_build_dir}/${_petsc_arch}/lib/petsc4py/lib/${_petsc_arch}/PETSc.cpython-39-x86_64-linux-gnu.so
+ # petsc4py
+ pushd ${_build_dir}/src/binding/petsc4py
+ CFLAGS="$(echo "${CFLAGS}" | sed 's%-D[^[:space:]]*%%g')" python setup.py install --root="${pkgdir}"
+ popd
# install license
install -Dm 644 ${_build_dir}/LICENSE ${pkgdir}/usr/share/licenses/${pkgname}/LICENSE
mkdir -p "${pkgdir}/etc/profile.d"
- echo "export PETSC_DIR=${_install_dir}" > "${pkgdir}/etc/profile.d/petsc.sh"
+ printf "export PETSC_DIR=${_install_dir}" > "${pkgdir}/etc/profile.d/petsc.sh"
chmod +x "${pkgdir}/etc/profile.d/petsc.sh"
# show where the shared libraries are
install -dm 755 "${pkgdir}/etc/ld.so.conf.d/"
- echo "${_install_dir}/lib" > "${pkgdir}/etc/ld.so.conf.d/petsc.conf"
+ printf "${_install_dir}/lib" > "${pkgdir}/etc/ld.so.conf.d/petsc.conf"
+
+ printf "PETSC_DIR = ${_petsc_dir}\nPETSC_ARCH = ${_petsc_arch}" \
+ > "${pkgdir}/usr/lib/python3.9/site-packages/petsc4py/lib/petsc.cfg"
_rem_dir="${_build_dir}/${_petsc_arch}"
t@@ -175,29 +176,4 @@ package() {
sed -i "s#${_rem_dir}#${_install_dir}#g" "${pkgdir}${_install_dir}/lib/petsc/conf/pkg.conf.hypre"
sed -i "s#${_rem_dir}#${_install_dir}#g" "${pkgdir}${_install_dir}/lib/petsc/conf/petscvariables"
sed -i "s#${_rem_dir}#${_install_dir}#g" "${pkgdir}${_install_dir}/lib/petsc/conf/petscrules"
- sed -i "s#${_build_dir}#${_petsc_dir}#g" "${_rem_dir}/lib/petsc4py/lib/petsc.cfg"
-
- # install petsc4py
- _python_package="${pkgdir}/usr/lib/python3.9/site-packages"
- install -Dm 644 "${_rem_dir}/lib/petsc4py-3.14.1-py3.9.egg-info/PKG-INFO" "${_python_package}/petsc4py-3.14.1-py3.9.egg-info/PKG-INFO"
- install -Dm 644 "${_rem_dir}/lib/petsc4py-3.14.1-py3.9.egg-info/SOURCES.txt" "${_python_package}/petsc4py-3.14.1-py3.9.egg-info/SOURCES.txt"
- install -Dm 644 "${_rem_dir}/lib/petsc4py-3.14.1-py3.9.egg-info/dependency_links.txt" "${_python_package}/petsc4py-3.14.1-py3.9.egg-info/dependency_links.txt"
- install -Dm 644 "${_rem_dir}/lib/petsc4py-3.14.1-py3.9.egg-info/not-zip-safe" "${_python_package}/petsc4py-3.14.1-py3.9.egg-info/not-zip-safe"
- install -Dm 644 "${_rem_dir}/lib/petsc4py-3.14.1-py3.9.egg-info/requires.txt" "${_python_package}/petsc4py-3.14.1-py3.9.egg-info/requires.txt"
- install -Dm 644 "${_rem_dir}/lib/petsc4py-3.14.1-py3.9.egg-info/top_level.txt" "${_python_package}/petsc4py-3.14.1-py3.9.egg-info/top_level.txt"
- install -Dm 644 "${_rem_dir}/lib/petsc4py/__init__.py" "${_python_package}/petsc4py/__init__.py"
- install -Dm 644 "${_rem_dir}/lib/petsc4py/__main__.py" "${_python_package}/petsc4py/__main__.py"
- install -Dm 644 "${_rem_dir}/lib/petsc4py/PETSc.pxd" "${_python_package}/petsc4py/PETSc.pxd"
- install -Dm 644 "${_rem_dir}/lib/petsc4py/PETSc.py" "${_python_package}/petsc4py/PETSc.py"
- install -Dm 644 "${_rem_dir}/lib/petsc4py/include/petsc4py/__init__.pxd" "${_python_package}/petsc4py/include/petsc4py/__init__.pxd"
- install -Dm 644 "${_rem_dir}/lib/petsc4py/include/petsc4py/__init__.pyx" "${_python_package}/petsc4py/include/petsc4py/__init__.pyx"
- install -Dm 644 "${_rem_dir}/lib/petsc4py/include/petsc4py/numpy.h" "${_python_package}/petsc4py/include/petsc4py/numpy.h"
- install -Dm 644 "${_rem_dir}/lib/petsc4py/include/petsc4py/petsc4py.h" "${_python_package}/petsc4py/include/petsc4py/petsc4py.h"
- install -Dm 644 "${_rem_dir}/lib/petsc4py/include/petsc4py/petsc4py.i" "${_python_package}/petsc4py/include/petsc4py/petsc4py.i"
- install -Dm 644 "${_rem_dir}/lib/petsc4py/include/petsc4py/petsc4py.PETSc_api.h" "${_python_package}/petsc4py/include/petsc4py/petsc4py.PETSc_api.h"
- install -Dm 644 "${_rem_dir}/lib/petsc4py/include/petsc4py/petsc4py.PETSc.h" "${_python_package}/petsc4py/include/petsc4py/petsc4py.PETSc.h"
- install -Dm 644 "${_rem_dir}/lib/petsc4py/include/petsc4py/PETSc.pxd" "${_python_package}/petsc4py/include/petsc4py/PETSc.pxd"
- install -Dm 644 "${_rem_dir}/lib/petsc4py/lib/__init__.py" "${_python_package}/petsc4py/lib/__init__.py"
- install -Dm 644 "${_rem_dir}/lib/petsc4py/lib/petsc.cfg" "${_python_package}/petsc4py/lib/petsc.cfg"
- install -Dm 755 "${_rem_dir}/lib/petsc4py/lib/${_petsc_arch}/PETSc.cpython-39-x86_64-linux-gnu.so" "${_python_package}/petsc4py/lib/PETSc.cpython-39-x86_64-linux-gnu.so"
}
(DIR) diff --git a/petsc4py.patch b/petsc4py.patch
t@@ -1,11 +0,0 @@
---- a/config/BuildSystem/config/packages/petsc4py.py
-+++ b/config/BuildSystem/config/packages/petsc4py.py
-@@ -46,7 +46,7 @@
-
- # if installing prefix location then need to set new value for PETSC_DIR/PETSC_ARCH
- if self.argDB['prefix'] and not 'package-prefix-hash' in self.argDB:
-- newdir = 'PETSC_DIR='+os.path.abspath(os.path.expanduser(self.argDB['prefix']))+' '+'PETSC_ARCH= MPICC=${PCC} '
-+ newdir = 'MPICC=${PCC} '
- else:
- newdir = 'MPICC=${PCC} '
-