tbetter way to find HYPRE (not working for A. Damsgaard) and PTScotch - petsc-git-PKGBUILD - build template for non-complex PETSC with petsc4py
(HTM) git clone git://src.adamsgaard.dk/petsc-git-PKGBUILD
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(DIR) commit 2d45841652059d613ca65763f2d2cff899bc82a2
(DIR) parent 6a822f8eace2d237f67494d94b5a67ca8bb5dbfa
(HTM) Author: eDgar <eDgar_|at|_openmail.cc>
Date: Mon, 27 Sep 2021 16:41:55 -0500
better way to find HYPRE (not working for A. Damsgaard) and PTScotch
Diffstat:
M .SRCINFO | 6 +++---
M PKGBUILD | 2 +-
M test_optdepends.sh | 57 ++++++++++++++++++++++---------
3 files changed, 44 insertions(+), 21 deletions(-)
---
(DIR) diff --git a/.SRCINFO b/.SRCINFO
t@@ -14,7 +14,7 @@ pkgbase = petsc-git
makedepends = git
makedepends = cython
makedepends = chrpath
- makedepends = hypre
+ makedepends = hypre=2.18.2
depends = openmpi
depends = lapack
depends = fftw
t@@ -22,7 +22,7 @@ pkgbase = petsc-git
depends = cython
depends = python-mpi4py
depends = python-numpy
- depends = eigen
+ depends = eigen>=3
depends = openblas
options = !staticlibs
source = git+https://gitlab.com/petsc/petsc.git#branch=release
t@@ -30,7 +30,7 @@ pkgbase = petsc-git
source = test_optdepends.sh
sha512sums = SKIP
sha512sums = b6a1d48aab1c2639a4c1cbd8b313ace253f1c36eedaa3de3508ffbd6060e1def99e2f516ed9bb509307f614b41791d09342e2c2280c0b2c25dda1092b0e569d2
- sha512sums = 77b257ea28a9f109c48c8447ab2db4204f6dba715626f15e916ec8f54c18d01588aa4d760c30b9a58659eefddafc7b54319525f8d89a693fd5305144eba7fc28
+ sha512sums = a4e064c08730058d63120a22c12657a100e5330546d66c44bb85e5bf84df80a23a729b0266af3efce2c8148f0266ddca99eaf9c8ea88d323cebe1d0c18c45d09
pkgname = petsc-git
optdepends = boost: Free peer-reviewed portable C++ source libraries
(DIR) diff --git a/PKGBUILD b/PKGBUILD
t@@ -22,7 +22,7 @@ source=(git+${url}.git#branch=release
test_optdepends.sh)
sha512sums=('SKIP'
'b6a1d48aab1c2639a4c1cbd8b313ace253f1c36eedaa3de3508ffbd6060e1def99e2f516ed9bb509307f614b41791d09342e2c2280c0b2c25dda1092b0e569d2'
- '77b257ea28a9f109c48c8447ab2db4204f6dba715626f15e916ec8f54c18d01588aa4d760c30b9a58659eefddafc7b54319525f8d89a693fd5305144eba7fc28')
+ 'a4e064c08730058d63120a22c12657a100e5330546d66c44bb85e5bf84df80a23a729b0266af3efce2c8148f0266ddca99eaf9c8ea88d323cebe1d0c18c45d09')
_config=linux-c-opt
_install_dir="/usr"
(DIR) diff --git a/test_optdepends.sh b/test_optdepends.sh
t@@ -2,6 +2,30 @@
# Test if external packages for PETSC are installed
+# Fair attempt to find the directory of a header file
+find_inc () {
+ local INC;
+ INC="$(find_so "$1")";
+ # * Faster first
+ if [ -f "${INC}" ]; then
+ INC="${INC}";
+ elif [ -f "${INC}"/"$1" ]; then
+ # ** The header is inside INC (a directory) e.g.
+ # /usr/include/scotch
+ # /usr/include/scotch/scotch.h
+ INC="${INC}"/"$1"
+ elif [ -d "${INC}" ]; then
+ # ** INC is a directory, and the header is deep inside
+ # (hopefully faster than `pacman')
+ INC="$(find "${INC}" -name "$1" -print -quit)";
+ elif [ ! "x$2" == "x" ]; then
+ # ** May be there is a package?
+ pacman -Qs "$2" 2>&1>/dev/null && \
+ INC="$(pacman -Qlq "$2" | grep "/$1\$" || printf "")";
+ fi;
+ dirname "${INC}"
+}
+
# Find a shared object (library; .so extension)
# example: find_so libboost_mpi
find_so () {
t@@ -77,7 +101,8 @@ HYPRE_SO="$(find_so libHYPRE.so)"
if [ -f "${HYPRE_SO}" ]; then
CONFOPTS="${CONFOPTS} --with-hypre=1"
CONFOPTS="${CONFOPTS} --with-hypre-lib=${HYPRE_SO}"
- CONFOPTS="${CONFOPTS} --with-hypre-include=/usr/include"
+ HYPRE_INC="$(find_inc "HYPRE.h" "hypre")"
+ CONFOPTS="${CONFOPTS} --with-hypre-include=${HYPRE_INC}"
fi
# MED: Data Modelization and Exchanges (meshes)
t@@ -196,23 +221,21 @@ if [ -f "$(find_so libscalapack.so)" ]; then
fi
# Scotch: Partitioning with sparse matrices
-# TODO: programatic way
-SCOTCH_DIR="/usr/include/scotch"
-if [ -d "${SCOTCH_DIR}" ]; then
- # SCOTCH_LIBS="$(ldconfig -p | awk '/scotch/{printf("'"${SCOTCH_DIR}"'/%s,", $1)}')"
- SCOTCH_LIBS="libesmumps.so,libptscotch.so"
- SCOTCH_LIBS="${SCOTCH_LIBS},libptscotcherr.so,libscotch.so"
- SCOTCH_LIBS="${SCOTCH_LIBS},libscotcherr.so"
-
- # Include bzip2 if scotch was built with bzip2 support
- if [ -f "$(find_so libbz2.so)" ]; then
- SCOTCH_LIBS="${SCOTCH_LIBS},${SCOTCH_DIR}/libbz2.so"
- fi
- # Add [], remove trailing ,
- SCOTCH_LIBS="[${SCOTCH_LIBS}]"
+# TODO: general (non-pacman) way
+PTSCOTCH_SO="$(find_so libptscotch.so)"
+if [ -f "${PTSCOTCH_SO}" ]; then
CONFOPTS="${CONFOPTS} --with-ptscotch=1"
- CONFOPTS="${CONFOPTS} --with-ptscotch-lib=${SCOTCH_LIBS}"
- CONFOPTS="${CONFOPTS} --with-ptscotch-include=${SCOTCH_DIR}"
+ SCOTCH_LIBS=$(pacman -Qlq scotch | grep '.so$'| tr '\n' ',')
+ # Check if libscotch was compiled with bz2
+ if [ ! -z "$(nm -D $(find_so libscotch.so) | grep bz)" ]; then
+ CONFOPTS="${CONFOPTS}$(find_so libbz2.so)"
+ else
+ # Remove trailing ,
+ SCOTCH_LIBS="${SCOTCH_LIBS%%,}"
+ fi;
+ CONFOPTS="${CONFOPTS} --with-ptscotch-lib=[${SCOTCH_LIBS}]"
+ CONFOPTS="${CONFOPTS} --with-ptscotch-include="
+ CONFOPTS="${CONFOPTS}$(find_inc ptscotch.h scotch)"
fi
# SuiteSparse: Sparse matrix library