tfix include errors - granular - granular dynamics simulation
 (HTM) git clone git://src.adamsgaard.dk/granular
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       ---
 (DIR) commit 7dd9725c18d77d9d8284980f7d952a58d03f4ca0
 (DIR) parent 8562f7577153f279b2ce74b35a9016690ec9b7f1
 (HTM) Author: Anders Damsgaard <anders@adamsgaard.dk>
       Date:   Fri, 19 Mar 2021 22:05:36 +0100
       
       fix include errors
       
       Diffstat:
         M arrays.h                            |       2 --
         M grain.c                             |      26 ++++++++++----------------
         M grain.h                             |      28 ++++++++++++----------------
         M granular2vtu.c                      |       7 ++++---
         M packing.h                           |       3 ---
         M simulation.c                        |       8 +++++---
         M simulation.h                        |       4 ----
       
       7 files changed, 31 insertions(+), 47 deletions(-)
       ---
 (DIR) diff --git a/arrays.h b/arrays.h
       t@@ -1,5 +1,3 @@
       -#include <stdio.h>
       -
        #ifndef ARRAYS_
        #define ARRAYS_
        
 (DIR) diff --git a/grain.c b/grain.c
       t@@ -23,7 +23,7 @@ grain_defaults(struct grain *g)
                size_t i;
        
                g->radius = 1.0;
       -        for (i = 0; i < ND; i++) {
       +        for (i = 0; i < 3; i++) {
                        g->pos[i]
                        = g->vel[i]
                        = g->acc[i]
       t@@ -57,11 +57,8 @@ print_padded_nd_double(FILE *stream, const double *arr)
        {
                size_t i;
                
       -        for (i = 0; i < ND; i++)
       -                if (i < ND)
       -                        fprintf(stream, "%.*g\t", FLOATPREC, arr[i]);
       -                else
       -                        fprintf(stream, "0.0\t");
       +        for (i = 0; i < 3; i++)
       +                fprintf(stream, "%.*g\t", FLOATPREC, arr[i]);
        }
        
        static void
       t@@ -69,11 +66,8 @@ print_padded_nd_int(FILE *stream, const size_t *arr)
        {
                size_t i;
                
       -        for (i = 0; i < ND; i++)
       -                if (i < ND)
       -                        fprintf(stream, "%zu\t", arr[i]);
       -                else
       -                        fprintf(stream, "0.0\t");
       +        for (i = 0; i < 3; i++)
       +                fprintf(stream, "%zu\t", arr[i]);
        }
        
        void
       t@@ -183,7 +177,7 @@ grain_check_values(const struct grain *g)
        
                check_float_positive("grain->radius", g->radius, &status);
        
       -        for (i = 0; i < ND; i++) {
       +        for (i = 0; i < 3; i++) {
                        check_float("grain->pos", g->pos[i], &status);
                        check_float("grain->vel", g->vel[i], &status);
                        check_float("grain->acc", g->acc[i], &status);
       t@@ -220,7 +214,7 @@ grain_check_values(const struct grain *g)
                                         g->fracture_toughness,
                                         &status);
        
       -        for (i = 0; i < ND; i++)
       +        for (i = 0; i < 3; i++)
                        if (g->gridpos[i] > 1)
                                warn_parameter_value("grain->gridpos is not 0 or 1",
                                                                         (double)g->gridpos[i], &status);
       t@@ -253,7 +247,7 @@ grain_zero_kinematics(struct grain *g)
        {
                size_t i;
        
       -        for (i = 0; i < ND; i++) {
       +        for (i = 0; i < 3; i++) {
                        g->vel[i] = 0.0;
                        g->acc[i] = 0.0;
                        g->force[i] = 0.0;
       t@@ -267,13 +261,13 @@ grain_zero_kinematics(struct grain *g)
        double
        grain_translational_kinetic_energy(const struct grain *g)
        {
       -        return 0.5 * grain_mass(g) * euclidean_norm(g->vel, ND);
       +        return 0.5 * grain_mass(g) * euclidean_norm(g->vel, 3.0);
        }
        
        double
        grain_rotational_kinetic_energy(const struct grain *g)
        {
       -        return 0.5 * grain_moment_of_inertia(g) * euclidean_norm(g->angvel, ND);
       +        return 0.5 * grain_moment_of_inertia(g) * euclidean_norm(g->angvel, 3.0);
        }
        
        double
 (DIR) diff --git a/grain.h b/grain.h
       t@@ -1,23 +1,19 @@
        #ifndef GRANULAR_GRAIN_
        #define GRANULAR_GRAIN_
        
       -#include <stdio.h>
       -#include <stdlib.h>
       -#include "granular.h"
       -
        struct grain {
        
                double radius;
       -        double pos[ND];
       -        double vel[ND];
       -        double acc[ND];
       -        double force[ND];
       -        double angpos[ND];
       -        double angvel[ND];
       -        double angacc[ND];
       -        double torque[ND];
       -        double disp[ND];
       -        double forceext[ND];
       +        double pos[3];
       +        double vel[3];
       +        double acc[3];
       +        double force[3];
       +        double angpos[3];
       +        double angvel[3];
       +        double angacc[3];
       +        double torque[3];
       +        double disp[3];
       +        double forceext[3];
                double density;
                size_t fixed;
                size_t rotating;
       t@@ -28,9 +24,9 @@ struct grain {
                double tensile_strength;
                double shear_strength;
                double fracture_toughness;
       -        size_t gridpos[ND];
       +        size_t gridpos[3];
                size_t ncontacts;
       -        double contact_stress[ND];
       +        double contact_stress[3];
                double thermal_energy;
                size_t color;
        };
 (DIR) diff --git a/granular2vtu.c b/granular2vtu.c
       t@@ -1,6 +1,8 @@
       +#define  _POSIX_C_SOURCE 200809L
        #include <stdio.h>
       +#include <stdlib.h>
        #include <unistd.h>
       -#include "grain.c"
       +#include "grain.h"
        #include "simulation.h"
        #include "arrays.h"
        #include "util.h"
       t@@ -18,8 +20,7 @@ main(void)
                while ((linelen = getline(&line, &linesize, stdin)) > 0)
                        add_grain(&sim, grain_read(line));
        
       -        /* if (sim.np > 0) */
       -                print_grains_vtk(stdout, sim.grains, sim.np);
       +        print_grains_vtk(stdout, sim.grains, sim.np);
        
                free_sim(&sim);
                free(line);
 (DIR) diff --git a/packing.h b/packing.h
       t@@ -1,9 +1,6 @@
        #ifndef GRANULAR_PACKING_
        #define GRANULAR_PACKING_
        
       -#include "grain.h"
       -#include "simulation.h"
       -
        size_t rectangular_packing(struct grain *grains[],
                                   size_t n[3],
                                   double radius_min, double radius_max,
 (DIR) diff --git a/simulation.c b/simulation.c
       t@@ -1,5 +1,7 @@
        #include <stdio.h>
       +#include <stdlib.h>
        #include <err.h>
       +#include "grain.h"
        #include "simulation.h"
        #include "arrays.h"
        #include "util.h"
       t@@ -9,9 +11,9 @@ init_sim(struct simulation *sim)
        {
                snprintf(sim->name, sizeof(sim->name), DEFAULT_SIMULATION_NAME);
                sim->np = 0;
       -        sim->gravacc = zeros(ND);
       -        sim->origo = zeros(ND);
       -        sim->L = ones(ND);
       +        sim->gravacc = zeros(3);
       +        sim->origo = zeros(3);
       +        sim->L = ones(3);
                sim->t = 0.0;
                sim->t_end = 0.0;
                sim->dt = 0.0;
 (DIR) diff --git a/simulation.h b/simulation.h
       t@@ -1,10 +1,6 @@
        #ifndef GRANULAR_SIMULATION_
        #define GRANULAR_SIMULATION_
        
       -#include <stdio.h>
       -#include "granular.h"
       -#include "grain.h"
       -
        #define DEFAULT_SIMULATION_NAME "unnamed_simulation"
        
        extern struct simulation sim;