6 Appendix: Basic Equations and 6.4 Constrained nonlinear initial data

6.5 Newtonian limit 

The Newtonian limit is defined by spatial scales much smaller than the horizon radius, peculiar velocities small compared to the speed of light, and a gravitational potential that is both much smaller than unity (in geometric units) and slowly varying in time. A comprehensive review of the theory of cosmological perturbations can be found in [99].

6.5.1 Dark and baryonic matter equations 

The appropriate perturbation equations in this limit are easily derived for a background FLRW expanding model, assuming a metric of the form

  equation872

where

equation876

and tex2html_wrap_inline3217 for open, flat and closed Universes. Also, tex2html_wrap_inline3219 is the cosmological scale factor, z is the redshift, and tex2html_wrap_inline2727 is the comoving inhomogeneous gravitational potential.

The governing equations in the Newtonian limit are the hydrodynamic conservation equations,

  equation882

  equation897

  equation928

the geodesic equations for collisionless dust or dark matter (in comoving coordinates),

equation947

equation953

Poisson's equation for the gravitational potential,

equation966

and the Friedman equation for the cosmological scale factor,

equation977

Here tex2html_wrap_inline3225 , tex2html_wrap_inline3227 , tex2html_wrap_inl
ine3229 and tex2html_wrap_inline3231 are the dark matter density, baryonic density, pressure and internal energy density in the proper reference frame, tex2html_wrap_inline3123 and tex2html_wrap_inline3235 are the baryonic comoving coordinates and peculiar velocities, tex2html_wrap_inline3237 and tex2html_wrap_inline3239 are the dark matter comoving coordinates and peculiar velocities, tex2html_wrap_inline3241 is the proper background density of the Universe, tex2html_wrap_inline2571 is the total density parameter, tex2html_wrap_inline3245 is the density parameter including both baryonic and dark matter contributions, tex2html_wrap_inline3247 is the density parameter attributed to the cosmological constant tex2html_wrap_inline2643 , tex2html_wrap_inline2719 is the present Hubble constant with 0.5<h<1, and tex2html_wrap_inline3255 represents microphysical radiative cooling and heating rates which can include Compton cooling (or heating) due to interactions of free electrons with the CMBR, bremsstrahlung, and atomic and molecular line cooling. Notice that `tilded' (`non-tilded') variables refer to proper (comoving) reference frame attributes.

An alternative total energy conservative form of the hydrodynamics equations that allows high resolution Godunov-type shock capturing techniques is

  equation1006

  equation1020

  equation1051

with the corresponding particle and gravity equations

equation1077

equation1084

equation1097

where tex2html_wrap_inline3257 is the comoving density, tex2html_wrap_inline3259 , tex2html_wrap_inline3261 is the proper frame peculiar velocity, p is the comoving pressure, tex2html_wrap_inline3265 is the total peculiar energy per comoving volume, and tex2html_wrap_inline3267 is the gravitational potential.

These equations are easily extended [19Jump To The Next Citation Poin
t In The Article] to include reactive chemistry of nine separate atomic and molecular species (H, H tex2html_wrap_inline2507 , He, He tex2html_wrap_inline2507 , He tex2html_wrap_inline2809
, H tex2html_wrap_inline2811 , H tex2html_wrap_inline2813 , H tex2htm
l_wrap_inline2815 , and e tex2html_wrap_inline2811 ), assuming a common flow field, supplementing the total mass conservation equation (58Popup Equation) with

  equation1116

for each of the species, and including the effects of non-equilibrium radiative cooling and consistent coupling to the hydrodynamics equations. The tex2html_wrap_inline3283 are rate coefficients for the two body reactions and are tabulated functions of the gas temperature T. The tex2html_wrap_inline3287 are integrals evaluating the photoionization and photodissociation of the different species. For a comprehensive discussion of the cosmologically important chemical reactions and reaction rates, see reference [1Jump To The Next Citation Point In The Article] .

Many numerical techniques have been developed to solve the hydrodynamic and collisionless particle equations. For the hydrodynamic equations, the methods range from Lagrangian SPH algorithms [64, 76, 103] to Eulerian finite difference techniques on static meshes [110, 104], nested grids [17], moving meshes [70], and adaptive mesh refinement [47]. For the dark matter equations, the canonical choices are treecodes [123] or PM and P tex2html_wrap_inline2565 M methods [78, 62Jump To The Next Citation Point In The Article], although many variants have been developed to optimize computational performance and accuracy, including grid and particle refinement methods (see references cited in [68Jump To The Next Citation Point In The
 Article]). An efficient method for solving non-equilibrium, multi-species chemical reactive flows together with the hydrodynamic equations in a background FLRW model is described in [1, 19].

The reader is referred to [83Jump To The Next Citation Po
int In The Article, 68Jump To The Next Citation Point In The Arti
cle] for thorough comparisons of different numerical methods applied to problems of structure formation. Reference [83] compares (by binning data at different resolutions) the statistical performance of five codes (three Eulerian and two SPH) on the problem of an evolving CDM Universe on large scales using the same initial data. The results indicate that global averages of physical attributes converge in rebinned data, but that some uncertainties remain at small levels. [68] compares twelve Lagrangian and Eulerian hydrodynamics codes to resolve the formation of a single X-ray cluster in a CDM Universe. The study finds generally good agreement for both dynamical and thermodynamical quantities, but also shows significant differences in the X-ray luminosity, a quantity that is especially sensitive to resolution [15].

6.5.2 Linear initial data 

The standard Zel'dovich solution [128, 62] can be used to generate initial conditions satisfying observed or theoretical power spectra of matter density fluctuations. Comoving physical displacements and velocities of the collisionless dark matter particles are set according to the power spectrum realization

  equation1154

where the complex phases are chosen from a gaussian random field, T(k) is a transfer function [25Jump To The Next Citatio
n Point In The Article] appropriate to a particular structure formation scenario (e.g., CDM), and n=1 corresponds to the Harrison-Zel'dovich power spectrum. The fluctuations are normalized with top hat smoothing using

  equation1160

where b is the bias factor chosen to match present observations of rms density fluctuations in a spherical window of radius tex2html_wrap_inline3297  Mpc. Also, P(k) is the Fourier transform of the square of the density fluctuations in equation (72Popup Equation), and

equation1169

is the Fourier transform of a spherical window of radius tex2html_wrap_inline3301 .

Overdensity peaks can be filtered on specified spatial or mass scales by Gaussian smoothing the random density field [25]

equation1178

on a comoving scale tex2html_wrap_inline3303 centered at tex2html_wrap_inline3305 (for example, tex2html_wrap_inline3307  Mpc with a filtered mass of tex2html_wrap_inline3309 over cluster scales). tex2html_wrap_inline3311 peaks are generated by sampling different random field realizations to satisfy the condition tex2html_wrap_inline3313 , where tex2html_wrap_inline3315 is the rms of Gaussian filtered density fluctuations over a spherical volume of radius tex2html_wrap_inline3303 .

Bertschinger [40] has provided a useful and publicly available package of programs called COSMICS for computing transfer functions, CMB anisotropies, and gaussian random initial conditions for numerical structure formation calculations. The package solves the coupled linearized Einstein, Boltzman, and fluid equations for scalar metric perturbations, photons, neutrinos, baryons, and collisionless dark matter in a background isotropic Universe. It also generates constrained or unconstrained matter distributions over arbitrarily specifiable spatial or mass scales.



6 Appendix: Basic Equations and 6.4 Constrained nonlinear initial data

Computational Cosmology: from the Early Universe to the Large Scale Structure
Peter Anninos
http://www.livingreviews.org/lrr-2001-2
© Max-Planck-Gesellschaft. ISSN 1433-8351
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