tAdded torqueScript3 for running three concurrent sphere instances - sphere - GPU-based 3D discrete element method algorithm with optional fluid coupling
 (HTM) git clone git://src.adamsgaard.dk/sphere
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       ---
 (DIR) commit f9351160ecc1458341df02017d7cd198e63ee776
 (DIR) parent 3eacaf0437b573b776d293ca3f56e0c21be94aa3
 (HTM) Author: Anders Damsgaard <adc@geo.au.dk>
       Date:   Thu, 14 Mar 2013 05:39:32 +0100
       
       Added torqueScript3 for running three concurrent sphere instances
       
       Diffstat:
         M python/sphere.py                    |      44 +++++++++++++++++++++++++++++++
       
       1 file changed, 44 insertions(+), 0 deletions(-)
       ---
 (DIR) diff --git a/python/sphere.py b/python/sphere.py
       t@@ -2059,6 +2059,50 @@ def run(binary, verbose=True, hideinputfile=False):
                stdout = " > /dev/null"
            subprocess.call("cd ..; ./sphere " + quiet + " " + binary + " " + stdout, shell=True)
        
       +def torqueScript3(obj1, obj2, obj3,
       +        email="adc@geo.au.dk", 
       +        email_alerts="ae",
       +        walltime="24:00:00",
       +        queue="qfermi",
       +        cudapath="/com/cuda/4.0.17/cuda",
       +        spheredir="/home/adc/code/sphere",
       +        workdir="/scratch"):
       +    '''Create job script for the Torque queue manager for three binaries
       +    '''
       +
       +    filename = self.sid + ".sh"
       +    fh = None
       +    try :
       +        fh = open(filename, "w")
       +
       +        fh.write('#!/bin/sh\n')
       +        fh.write('#PBS -N ' + obj1.sid + '_' + obj2.sid + '_' + obj3.sid + '\n')
       +        fh.write('#PBS -l nodes=1:ppn=1\n')
       +        fh.write('#PBS -l walltime=' + walltime + '\n')
       +        fh.write('#PBS -q ' + queue + '\n')
       +        fh.write('#PBS -M ' + email + '\n')
       +        fh.write('#PBS -m ' + email_alerts + '\n')
       +        fh.write('CUDAPATH=' + cudapath + '\n')
       +        fh.write('export PATH=$CUDAPATH/bin:$PATH\n')
       +        fh.write('export LD_LIBRARY_PATH=$CUDAPATH/lib64:$CUDAPATH/lib:$LD_LIBRARY_PATH\n')
       +        fh.write('echo "`whoami`@`hostname`"\n')
       +        fh.write('echo "Start at `date`"\n')
       +        fh.write('ORIGDIR=' + spheredir + '\n')
       +        fh.write('WORKDIR=' + workdir + "/$PBS_JOBID\n")
       +        fh.write('cp -r $ORIGDIR/* $WORKDIR\n')
       +        fh.write('cd $WORKDIR\n')
       +        fh.write('cmake . && make\n')
       +        fh.write('./sphere input/' + obj1.sid + '.bin > /dev/null &\n')
       +        fh.write('./sphere input/' + obj2.sid + '.bin > /dev/null &\n')
       +        fh.write('./sphere input/' + obj3.sid + '.bin > /dev/null &\n')
       +        fh.write('wait\n')
       +        fh.write('cp $WORKDIR/output/* $ORIGDIR/output/\n')
       +        fh.write('echo "End at `date`"\n')
       +
       +    finally :
       +        if fh is not None:
       +            fh.close()
       +
        
        
        def status(project):