tfix dimensions, add missing initTemporal call - sphere - GPU-based 3D discrete element method algorithm with optional fluid coupling
 (HTM) git clone git://src.adamsgaard.dk/sphere
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       ---
 (DIR) commit ceea3e1b575916a5a5e1a3427795212a1649d7c5
 (DIR) parent f7c44f8a26363e508d1c2c4702980921b2506e1d
 (HTM) Author: Anders Damsgaard <anders.damsgaard@geo.au.dk>
       Date:   Mon,  1 Sep 2014 12:45:28 +0200
       
       fix dimensions, add missing initTemporal call
       
       Diffstat:
         M python/capillary-cohesion2.py       |      40 +++++++++++++++++++++++--------
       
       1 file changed, 30 insertions(+), 10 deletions(-)
       ---
 (DIR) diff --git a/python/capillary-cohesion2.py b/python/capillary-cohesion2.py
       t@@ -30,19 +30,37 @@ scale_factor = r_mean/r_mean_old
        cube.radius *= scale_factor
        cube.L *= scale_factor
        cube.x *= scale_factor
       +cube.x[:,0] += numpy.abs(numpy.min(cube.x[:,0] - cube.radius))
       +cube.x[:,1] += numpy.abs(numpy.min(cube.x[:,1] - cube.radius))
       +cube.x[:,2] += numpy.abs(numpy.min(cube.x[:,2] - cube.radius))
       +cube.L[0] = numpy.max(numpy.max(cube.x[:,0] + cube.radius))
       +cube.L[1] = numpy.max(numpy.max(cube.x[:,1] + cube.radius))
       +cube.L[2] = numpy.max(numpy.max(cube.x[:,2] + cube.radius))
       +cube.writeVTK()
        
        # Fill out grid with cubic packages
        grid = numpy.array((
       -        [ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
       -        [ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
       -        [ 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0],
       -        [ 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0],
       -        [ 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0],
       -        [ 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0],
       -        [ 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0],
       -        [ 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0],
       -        [ 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0],
       -        [ 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0]))
       +        [ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
       +        [ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
       +        [ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
       +        [ 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
       +        [ 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
       +        [ 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
       +        [ 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
       +        [ 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
       +        [ 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
       +        [ 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
       +        [ 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
       +        [ 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
       +        [ 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
       +        [ 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
       +        [ 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
       +        [ 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
       +        [ 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
       +        [ 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
       +        [ 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
       +        [ 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
       +        [ 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]))
        
        # World dimensions and cube grid
        nx = grid.shape[1]    # horizontal cubes
       t@@ -80,6 +98,8 @@ sim.defaultParams(capillaryCohesion=cohesion)
        sim.k_n[0] = 1.0e6
        sim.k_t[0] = 1.0e6
        sim.g[2] = -10.0
       +sim.initTemporal(2.0, epsilon=0.07)
       +sim.writeVTK()
        sim.run(device=device)
        
        sim.writeVTKall()