tadded another porosity test - sphere - GPU-based 3D discrete element method algorithm with optional fluid coupling
 (HTM) git clone git://src.adamsgaard.dk/sphere
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       ---
 (DIR) commit 898982779bd4ce60555c3ae75e9f6e5eedd0b63b
 (DIR) parent c877ef617977b71cc416d31543365b178e31e3d1
 (HTM) Author: Anders Damsgaard <anders.damsgaard@geo.au.dk>
       Date:   Wed, 30 Jul 2014 12:28:59 +0200
       
       added another porosity test
       
       Diffstat:
         A python/permeability-c_phi=0.5.sh    |      49 +++++++++++++++++++++++++++++++
       
       1 file changed, 49 insertions(+), 0 deletions(-)
       ---
 (DIR) diff --git a/python/permeability-c_phi=0.5.sh b/python/permeability-c_phi=0.5.sh
       t@@ -0,0 +1,49 @@
       +#!/bin/sh
       +#PBS -N permeability-c_phi=0.5
       +#PBS -l nodes=1:ppn=3
       +#PBS -l walltime=1920:00:00
       +#PBS -q qfermi
       +#PBS -M adc@geo.au.dk
       +#PBS -m abe
       +
       +# Grendel CUDA
       +source /com/gcc/4.6.4/load.sh
       +CUDAPATH=/com/cuda/5.5.22
       +export PATH=$HOME/bin:$PATH
       +export PATH=$CUDAPATH/bin:$PATH
       +export LD_LIBRARY_PATH=$CUDAPATH/lib64:$CUDAPATH/lib:$LD_LIBRARY_PATH
       +
       +# Manually installed Python modules
       +export PYTHONPATH=$HOME/.local/lib/python:$PYTHONPATH
       +export PYTHONPATH=$HOME/.local/lib64/python:$PYTHONPATH
       +
       +# Manually installed Python
       +#export PATH=/home/adc/.local/bin:$PATH
       +
       +# Shared Python2.7
       +PYTHON=/com/python/2.7.6
       +export PYTHONPATH=$PYTHON/lib:$PYTHONPATH
       +export PATH=$PYTHON/bin:$PATH
       +
       +echo "`whoami`@`hostname`"
       +echo "Start at `date`"
       +
       +ORIGDIR=/home/adc/code/sphere
       +#WORKDIR=/scratch/$PBS_JOBID
       +WORKDIR=$ORIGDIR
       +
       +#cp -r $ORIGDIR/* $WORKDIR
       +
       +cd $WORKDIR
       +nvidia-smi
       +rm CMakeCache.txt
       +cmake . && make
       +cd python
       +python permeability-starter.py 0 0.5 1.0 1.0e3 2.0e3 &
       +python permeability-starter.py 1 0.5 1.0 4.0e3 1.0e4 &
       +python permeability-starter.py 2 0.5 1.0 2.0e4 4.0e4 &
       +wait
       +
       +#cp $WORKDIR/output/* $ORIGDIR/output/
       +
       +echo "End at `date`"