tadd permeable variable shear rate experiment - sphere - GPU-based 3D discrete element method algorithm with optional fluid coupling
 (HTM) git clone git://src.adamsgaard.dk/sphere
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       ---
 (DIR) commit 7b817e012fbba2d79bee61e00254b40e3e4591a1
 (DIR) parent 608275bbb121f4bf1bab473bb28ba00e80464a77
 (HTM) Author: Anders Damsgaard <anders.damsgaard@geo.au.dk>
       Date:   Mon, 25 May 2015 16:31:45 +0200
       
       add permeable variable shear rate experiment
       
       Diffstat:
         A python/halfshear-darcy-perm-cont.sh |      49 +++++++++++++++++++++++++++++++
         A python/halfshear-darcy-perm.sh      |      50 +++++++++++++++++++++++++++++++
       
       2 files changed, 99 insertions(+), 0 deletions(-)
       ---
 (DIR) diff --git a/python/halfshear-darcy-perm-cont.sh b/python/halfshear-darcy-perm-cont.sh
       t@@ -0,0 +1,49 @@
       +#!/bin/sh
       +#PBS -N hs-perm
       +#PBS -l nodes=1:ppn=3
       +#PBS -l walltime=48:00:00
       +#PBS -q qfermi
       +#PBS -M adc@geo.au.dk
       +#PBS -m abe
       +
       +# Grendel CUDA
       +source /com/gcc/4.6.4/load.sh
       +CUDAPATH=/com/cuda/5.5.22
       +export PATH=$HOME/bin:$PATH
       +export PATH=$CUDAPATH/bin:$PATH
       +export LD_LIBRARY_PATH=$CUDAPATH/lib64:$CUDAPATH/lib:$LD_LIBRARY_PATH
       +
       +# Manually installed Python modules
       +export PYTHONPATH=$HOME/.local/lib/python:$PYTHONPATH
       +export PYTHONPATH=$HOME/.local/lib64/python:$PYTHONPATH
       +
       +# Manually installed Python
       +#export PATH=/home/adc/.local/bin:$PATH
       +
       +# Shared Python2.7
       +PYTHON=/com/python/2.7.6
       +export PYTHONPATH=$PYTHON/lib:$PYTHONPATH
       +export PATH=$PYTHON/bin:$PATH
       +
       +echo "`whoami`@`hostname`"
       +echo "Start at `date`"
       +
       +ORIGDIR=/home/adc/code/sphere
       +#WORKDIR=/scratch/$PBS_JOBID
       +WORKDIR=$ORIGDIR
       +
       +#cp -r $ORIGDIR/* $WORKDIR
       +
       +cd $WORKDIR
       +nvidia-smi
       +rm CMakeCache.txt
       +cmake . && make
       +cd python
       +python continue_sim.py halfshear-darcy-sigma0=20000.0-k_c=3.5e-13-mu=1.797e-07-velfac=1.0-shear 1 0 &
       +python continue_sim.py halfshear-darcy-sigma0=20000.0-k_c=3.5e-13-mu=1.797e-08-velfac=1.0-shear 1 1 &
       +python continue_sim.py halfshear-darcy-sigma0=20000.0-k_c=3.5e-13-mu=1.797e-09-velfac=1.0-shear 1 2 &
       +wait
       +
       +#cp $WORKDIR/output/* $ORIGDIR/output/
       +
       +echo "End at `date`"
 (DIR) diff --git a/python/halfshear-darcy-perm.sh b/python/halfshear-darcy-perm.sh
       t@@ -0,0 +1,50 @@
       +#!/bin/sh
       +#PBS -N hs-perm
       +#PBS -l nodes=1:ppn=3
       +#PBS -l walltime=48:00:00
       +#PBS -q qfermi
       +#PBS -M adc@geo.au.dk
       +#PBS -m abe
       +
       +# Grendel CUDA
       +source /com/gcc/4.6.4/load.sh
       +CUDAPATH=/com/cuda/5.5.22
       +export PATH=$HOME/bin:$PATH
       +export PATH=$CUDAPATH/bin:$PATH
       +export LD_LIBRARY_PATH=$CUDAPATH/lib64:$CUDAPATH/lib:$LD_LIBRARY_PATH
       +
       +# Manually installed Python modules
       +export PYTHONPATH=$HOME/.local/lib/python:$PYTHONPATH
       +export PYTHONPATH=$HOME/.local/lib64/python:$PYTHONPATH
       +
       +# Manually installed Python
       +#export PATH=/home/adc/.local/bin:$PATH
       +
       +# Shared Python2.7
       +PYTHON=/com/python/2.7.6
       +export PYTHONPATH=$PYTHON/lib:$PYTHONPATH
       +export PATH=$PYTHON/bin:$PATH
       +
       +echo "`whoami`@`hostname`"
       +echo "Start at `date`"
       +
       +ORIGDIR=/home/adc/code/sphere
       +#WORKDIR=/scratch/$PBS_JOBID
       +WORKDIR=$ORIGDIR
       +
       +#cp -r $ORIGDIR/* $WORKDIR
       +
       +cd $WORKDIR
       +nvidia-smi
       +rm CMakeCache.txt
       +cmake . && make
       +cd python
       +# $ python shear-starter.py <DEVICE> <FLUID> <C_PHI> <C_GRAD_P> <SIGMA_0>
       +python halfshear-darcy-starter.py 0 1 1.0 3.5e-13 20000.0 1.797e-7 1.0 &
       +python halfshear-darcy-starter.py 1 1 1.0 3.5e-13 20000.0 1.797e-8 1.0 &
       +python halfshear-darcy-starter.py 2 1 1.0 3.5e-13 20000.0 1.797e-9 1.0 &
       +wait
       +
       +#cp $WORKDIR/output/* $ORIGDIR/output/
       +
       +echo "End at `date`"