tadded scripts to resume simulations - sphere - GPU-based 3D discrete element method algorithm with optional fluid coupling
 (HTM) git clone git://src.adamsgaard.dk/sphere
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       ---
 (DIR) commit 1d927157ef3be46380021661146ac87bc424af79
 (DIR) parent 591daf5e211d81a2c123ebda6c66e4ab90b6a776
 (HTM) Author: Anders Damsgaard <anders.damsgaard@geo.au.dk>
       Date:   Mon, 17 Nov 2014 11:26:52 +0100
       
       added scripts to resume simulations
       
       Diffstat:
         A python/halfshear-darcy-velfac0.5-c… |      49 +++++++++++++++++++++++++++++++
         A python/halfshear-darcy-velfac1-con… |      49 +++++++++++++++++++++++++++++++
         A python/halfshear-darcy-velfac2-con… |      49 +++++++++++++++++++++++++++++++
       
       3 files changed, 147 insertions(+), 0 deletions(-)
       ---
 (DIR) diff --git a/python/halfshear-darcy-velfac0.5-cont.sh b/python/halfshear-darcy-velfac0.5-cont.sh
       t@@ -0,0 +1,49 @@
       +#!/bin/sh
       +#PBS -N hs-d-v0.5
       +#PBS -l nodes=1:ppn=3
       +#PBS -l walltime=48:00:00
       +#PBS -q qfermi
       +#PBS -M adc@geo.au.dk
       +#PBS -m abe
       +
       +# Grendel CUDA
       +source /com/gcc/4.6.4/load.sh
       +CUDAPATH=/com/cuda/5.5.22
       +export PATH=$HOME/bin:$PATH
       +export PATH=$CUDAPATH/bin:$PATH
       +export LD_LIBRARY_PATH=$CUDAPATH/lib64:$CUDAPATH/lib:$LD_LIBRARY_PATH
       +
       +# Manually installed Python modules
       +export PYTHONPATH=$HOME/.local/lib/python:$PYTHONPATH
       +export PYTHONPATH=$HOME/.local/lib64/python:$PYTHONPATH
       +
       +# Manually installed Python
       +#export PATH=/home/adc/.local/bin:$PATH
       +
       +# Shared Python2.7
       +PYTHON=/com/python/2.7.6
       +export PYTHONPATH=$PYTHON/lib:$PYTHONPATH
       +export PATH=$PYTHON/bin:$PATH
       +
       +echo "`whoami`@`hostname`"
       +echo "Start at `date`"
       +
       +ORIGDIR=/home/adc/code/sphere
       +#WORKDIR=/scratch/$PBS_JOBID
       +WORKDIR=$ORIGDIR
       +
       +#cp -r $ORIGDIR/* $WORKDIR
       +
       +cd $WORKDIR
       +nvidia-smi
       +rm CMakeCache.txt
       +cmake . && make
       +cd python
       +python continue_sim.py halfshear-darcy-sigma0=20000.0-k_c=3.5e-13-mu=1.797e-06-velfac=0.5-shear 1 0 &
       +python continue_sim.py halfshear-darcy-sigma0=20000.0-k_c=3.5e-14-mu=1.797e-06-velfac=0.5-shear 1 1 &
       +python continue_sim.py halfshear-darcy-sigma0=20000.0-k_c=3.5e-15-mu=1.797e-06-velfac=0.5-shear 1 2 &
       +wait
       +
       +#cp $WORKDIR/output/* $ORIGDIR/output/
       +
       +echo "End at `date`"
 (DIR) diff --git a/python/halfshear-darcy-velfac1-cont.sh b/python/halfshear-darcy-velfac1-cont.sh
       t@@ -0,0 +1,49 @@
       +#!/bin/sh
       +#PBS -N hs-d-v1
       +#PBS -l nodes=1:ppn=3
       +#PBS -l walltime=48:00:00
       +#PBS -q qfermi
       +#PBS -M adc@geo.au.dk
       +#PBS -m abe
       +
       +# Grendel CUDA
       +source /com/gcc/4.6.4/load.sh
       +CUDAPATH=/com/cuda/5.5.22
       +export PATH=$HOME/bin:$PATH
       +export PATH=$CUDAPATH/bin:$PATH
       +export LD_LIBRARY_PATH=$CUDAPATH/lib64:$CUDAPATH/lib:$LD_LIBRARY_PATH
       +
       +# Manually installed Python modules
       +export PYTHONPATH=$HOME/.local/lib/python:$PYTHONPATH
       +export PYTHONPATH=$HOME/.local/lib64/python:$PYTHONPATH
       +
       +# Manually installed Python
       +#export PATH=/home/adc/.local/bin:$PATH
       +
       +# Shared Python2.7
       +PYTHON=/com/python/2.7.6
       +export PYTHONPATH=$PYTHON/lib:$PYTHONPATH
       +export PATH=$PYTHON/bin:$PATH
       +
       +echo "`whoami`@`hostname`"
       +echo "Start at `date`"
       +
       +ORIGDIR=/home/adc/code/sphere
       +#WORKDIR=/scratch/$PBS_JOBID
       +WORKDIR=$ORIGDIR
       +
       +#cp -r $ORIGDIR/* $WORKDIR
       +
       +cd $WORKDIR
       +nvidia-smi
       +rm CMakeCache.txt
       +cmake . && make
       +cd python
       +python continue_sim.py halfshear-darcy-sigma0=20000.0-k_c=3.5e-13-mu=1.797e-06-velfac=1.0-shear 1 0 &
       +python continue_sim.py halfshear-darcy-sigma0=20000.0-k_c=3.5e-14-mu=1.797e-06-velfac=1.0-shear 1 1 &
       +python continue_sim.py halfshear-darcy-sigma0=20000.0-k_c=3.5e-15-mu=1.797e-06-velfac=1.0-shear 1 2 &
       +wait
       +
       +#cp $WORKDIR/output/* $ORIGDIR/output/
       +
       +echo "End at `date`"
 (DIR) diff --git a/python/halfshear-darcy-velfac2-cont.sh b/python/halfshear-darcy-velfac2-cont.sh
       t@@ -0,0 +1,49 @@
       +#!/bin/sh
       +#PBS -N hs-d-v2
       +#PBS -l nodes=1:ppn=3
       +#PBS -l walltime=48:00:00
       +#PBS -q qfermi
       +#PBS -M adc@geo.au.dk
       +#PBS -m abe
       +
       +# Grendel CUDA
       +source /com/gcc/4.6.4/load.sh
       +CUDAPATH=/com/cuda/5.5.22
       +export PATH=$HOME/bin:$PATH
       +export PATH=$CUDAPATH/bin:$PATH
       +export LD_LIBRARY_PATH=$CUDAPATH/lib64:$CUDAPATH/lib:$LD_LIBRARY_PATH
       +
       +# Manually installed Python modules
       +export PYTHONPATH=$HOME/.local/lib/python:$PYTHONPATH
       +export PYTHONPATH=$HOME/.local/lib64/python:$PYTHONPATH
       +
       +# Manually installed Python
       +#export PATH=/home/adc/.local/bin:$PATH
       +
       +# Shared Python2.7
       +PYTHON=/com/python/2.7.6
       +export PYTHONPATH=$PYTHON/lib:$PYTHONPATH
       +export PATH=$PYTHON/bin:$PATH
       +
       +echo "`whoami`@`hostname`"
       +echo "Start at `date`"
       +
       +ORIGDIR=/home/adc/code/sphere
       +#WORKDIR=/scratch/$PBS_JOBID
       +WORKDIR=$ORIGDIR
       +
       +#cp -r $ORIGDIR/* $WORKDIR
       +
       +cd $WORKDIR
       +nvidia-smi
       +rm CMakeCache.txt
       +cmake . && make
       +cd python
       +python continue_sim.py halfshear-darcy-sigma0=20000.0-k_c=3.5e-13-mu=1.797e-06-velfac=2.0-shear 1 0 &
       +python continue_sim.py halfshear-darcy-sigma0=20000.0-k_c=3.5e-14-mu=1.797e-06-velfac=2.0-shear 1 1 &
       +python continue_sim.py halfshear-darcy-sigma0=20000.0-k_c=3.5e-15-mu=1.797e-06-velfac=2.0-shear 1 2 &
       +wait
       +
       +#cp $WORKDIR/output/* $ORIGDIR/output/
       +
       +echo "End at `date`"