tshow or hide figures with the show_figures flag - cosmo - front and backend for Markov-Chain Monte Carlo inversion of cosmogenic nuclide concentrations
(HTM) git clone git://src.adamsgaard.dk/cosmo
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(DIR) README
(DIR) LICENSE
---
(DIR) commit bb3d54aa230ee29a44e58f72a841b4638e3d09b8
(DIR) parent 2ca0c20467bfb639003cda0641fc73e35997d678
(HTM) Author: Anders Damsgaard <anders.damsgaard@geo.au.dk>
Date: Thu, 27 Aug 2015 16:06:18 +0200
show or hide figures with the show_figures flag
Diffstat:
M matlab/file_scanner_mcmc_starter.m | 6 +++++-
M matlab/generate_plots.m | 43 +++++++++++++++++++------------
2 files changed, 31 insertions(+), 18 deletions(-)
---
(DIR) diff --git a/matlab/file_scanner_mcmc_starter.m b/matlab/file_scanner_mcmc_starter.m
t@@ -30,6 +30,10 @@ debug = true; % show debugging output to matlab console
% output graphics formats
graphics_formats = {'fig', 'png', 'pdf'};
+% show figures after they are generated in addition to saving them,
+% values: 'on' or 'off'
+show_figures = 'off';
+
% number of MCMC walkers
n_walkers = 1;
t@@ -84,7 +88,7 @@ while 1
% generate plots
%CompareWalks2(Ss, save_file)
- generate_plots(Ss, save_file, graphics_formats)
+ generate_plots(Ss, save_file, graphics_formats, show_figures);
% delete or archive the file so it is not processed again
%delete(infile)
(DIR) diff --git a/matlab/generate_plots.m b/matlab/generate_plots.m
t@@ -1,4 +1,4 @@
-function generate_plots(Ss, save_file, formats)
+function generate_plots(Ss, save_file, formats, show_figures)
%% Copied from m_pakke2014maj11/CompareWalks2.m
% Generates and saves all relevant figures
t@@ -9,7 +9,9 @@ Nwalkers = fixed_stuff.Nwalkers;
M = size(fixed_stuff.mminmax,1);
%Compare BurnIn
-fh(1)=figure;
+
+fh(1) = figure('visible', show_figures);
+
for iwalk=1:min(4,Nwalkers) %only up to the first four walks
QsBurnIns(:,iwalk)=Ss{iwalk}.QsBurnIn;
Qss(:,iwalk) =Ss{iwalk}.Qs;
t@@ -94,7 +96,7 @@ axis ij
box on
%Compare sampling cross-plots
-fh = [fh;figure];
+fh = [fh;figure('visible', show_figures)];
Nbin = 50;
mminmax = fixed_stuff.mminmax; %bounds of uniform prior intervals
t@@ -137,7 +139,7 @@ for i1=1:M
isub2 = iwalk; isub = isub2 + (isub1-1)*4;
if isub>4*5
isub1 = 1; isub=1;
- fh = [fh;figure];
+ fh = [fh;figure('visible', show_figures)];
end
subplot(5,4,isub)
pcolor(xbins{i1},ybins,smoothgrid);
t@@ -157,7 +159,7 @@ for i1=1:M
end
end
-fh = [fh;figure];
+fh = [fh;figure('visible', show_figures)];
for i1 = 1:M
for iwalk=1:min(4,Nwalkers)
isub = (i1-1)*4 + iwalk;
t@@ -174,26 +176,33 @@ for i1 = 1:M
end
end
+
+
%Putting in titles over figure 2:4
-figure(fh(2))
+
+figure(fh(2)); set(fh(2), 'Visible', show_figures)
subplot(5,4,2)
title(['Density cross-plots A. Result file =',save_file],'interp','none')
-figure(fh(3))
+
+figure(fh(3)); set(fh(3), 'Visible', show_figures)
subplot(5,4,2)
title(['Density cross-plots B. Result file =',save_file],'interp','none')
-figure(fh(4))
+
+figure(fh(4)); set(fh(4), 'Visible', show_figures)
subplot(5,4,2)
title(['Histograms. Result file =',save_file],'interp','none')
-figpos1 = [6 474 1910 504];
-figpos2 =[ 12 94 645 887];
-figpos3 =[ 610 94 645 887];
-figpos4 =[ 1207 94 740 887];
-set(fh(2),'pos',figpos2)
-set(fh(3),'pos',figpos3)
-set(fh(4),'pos',figpos4)
-set(fh(1),'pos',figpos1)
-figure(fh(1))
+if strcmp(show_figures, 'on')
+ figpos1 = [6 474 1910 504];
+ figpos2 =[ 12 94 645 887];
+ figpos3 =[ 610 94 645 887];
+ figpos4 =[ 1207 94 740 887];
+ set(fh(2),'pos',figpos2)
+ set(fh(3),'pos',figpos3)
+ set(fh(4),'pos',figpos4)
+ set(fh(1),'pos',figpos1)
+ figure(fh(1))
+end
for i=1:4
figure_save_multiformat(figure(fh(i)), ...