timproved wording - cosmo - front and backend for Markov-Chain Monte Carlo inversion of cosmogenic nuclide concentrations
 (HTM) git clone git://src.adamsgaard.dk/cosmo
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       ---
 (DIR) commit a53b33ee8911d15bcfd27b48dad8944d0fd86baa
 (DIR) parent 1d8bf4c603bb8c5c9084c8c7e3c82d0f6fe5a87d
 (HTM) Author: Anders Damsgaard <anders.damsgaard@geo.au.dk>
       Date:   Fri, 27 Nov 2015 16:46:59 +0100
       
       improved wording
       
       Diffstat:
         M pages/methods.html                  |      51 ++++++++++++++++---------------
       
       1 file changed, 26 insertions(+), 25 deletions(-)
       ---
 (DIR) diff --git a/pages/methods.html b/pages/methods.html
       t@@ -62,19 +62,18 @@
                            with uniform probability across the logarithmic parameter
                            interval. The temporal parameter (<i>t</i><sub>degla</sub>)
                            and climate record threshold value
       -                    (&delta;<sup>18</sup>O<sub>threshold</sub>) is tested with
       +                    (&delta;<sup>18</sup>O<sub>threshold</sub>) are tested with
                            uniform probability across the linear parameter interval.
       -                    The user specifies the bounds of the model parameters.
                            </p>
        
                            <p>When model parameters 
                            (&epsilon;<sub>int</sub>, &epsilon;<sub>gla</sub>,
                            <i>t</i><sub>degla</sub>,
                            &delta;<sup>18</sup>O<sub>threshold</sub>) are varied within
       -                    specified limits, they can be thought of as orthogonal axes
       -                    creating a coordinate system in higher-order space. Every
       -                    position in this model space is associated with a certain
       -                    set of model parameter values.
       +                    specified limits, they can be thought of as being orthogonal
       +                    axes spanning a coordinate system in four-dimensional space.
       +                    Each position in this model space is associated with a
       +                    unique set of model parameter values.
                            </p>
        
                            <p>Given a single value of model parameters
       t@@ -86,7 +85,7 @@
                            computed. This <i>forward model</i> describes a possible
                            history of exhumation and TCN production in a sample volume
                            as it experiences the variable physical environment of the
       -                    Pleistocene.</p>
       +                    Quaternary.</p>
        
                        </div>
        
       t@@ -105,7 +104,9 @@
                            require more than 10 m of ice thickness for production due
                            to spallation (&gt;50 m for muons). Interglacial periods are
                            assumed to have been characterized by 100% exposure and zero
       -                    shielding.</p>
       +                    shielding. The production of TCNs takes place during the
       +                    interglacials, while erosion removes the land surface at
       +                    different rates during the glacials and interglacials.</p>
                        </div>
        
                        <div id="mcmcwalker" class="subsection scrollspy">
       t@@ -121,8 +122,8 @@
                            evaluates if the output result matches the observational
                            record better or worse than the output at its previous
                            position in model space. If the new results better matches
       -                    the observed dataset, it continues walking along
       -                    approximately in the same direction in model space.
       +                    the observed dataset, it continues walking in the same
       +                    direction in model space.
                            </p>
        
                            <p>
       t@@ -142,19 +143,19 @@
                            <p>
                            For a given observational data set more than one set of
                            model parameters may produce forward models which
       -                    sufficiently satisfy the MCMC walker as solution
       -                    approximations. In this case the solution is
       -                    <i>non-unique</i>. Even worse, a single MCMC walker may find
       -                    an area in model space which seemingly is in good
       -                    correspondence with the observational data set, but is
       -                    missing a much better set of model parameters since they are
       -                    located somewhere entirely different in the model space. In
       -                    order to mitigate these issues, MCMC inversions are often
       -                    performed using several MCMC walkers.  The starting point of
       -                    each MCMC walker is chosen at random, resulting in unique
       -                    walks through the model space. If a single walker is caught
       -                    in an area of non-ideal solutions, chances are that the
       -                    other walkers will find the area of better model parameters.
       +                    sufficiently satisfy the MCMC walker.
       +                    In this case the solution is <i>non-unique</i>. Even worse,
       +                    a single MCMC walker may find an area in model space which
       +                    seemingly is in good correspondence with the observational
       +                    data set, but the walker is missing a much better set of
       +                    model parameters since they are located somewhere entirely
       +                    different in the model space. In order to mitigate these
       +                    issues, MCMC inversions are often performed using several
       +                    MCMC walkers.  The starting point of each MCMC walker is
       +                    chosen at random, resulting in unique walks through the
       +                    model space. If a single walker is caught in an area of
       +                    non-ideal solutions, chances are that the other walkers will
       +                    find the area of better model parameters.
                            </p>
        
                            <p>
       t@@ -162,8 +163,8 @@
                            walkers. When casually trying out the calculator we
                            recommend using low numbers of MCMC walkers (1 to 2) in
                            order to obtain fast results and reduce load on the server.
       -                    When attempting to produce high-quality reliable results,
       -                    the number of walkers should be increased (3 to 4).
       +                    When attempting to produce high-quality and reliable
       +                    results, the number of walkers should be increased (3 to 4).
                            </p>
                        </div>