tDrop compatibility with Julia versions prior to 1.0, remove Compat.jl - Granular.jl - Julia package for granular dynamics simulation
(HTM) git clone git://src.adamsgaard.dk/Granular.jl
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---
(DIR) commit 8ce80d28d0c181205aa5674159f7e8a88caa01d6
(DIR) parent 04f42947eb5779be0ef3eab670bb72953ca3d531
(HTM) Author: Anders Damsgaard <anders@adamsgaard.dk>
Date: Sun, 12 Aug 2018 16:23:28 +0200
Drop compatibility with Julia versions prior to 1.0, remove Compat.jl
Diffstat:
M REQUIRE | 1 -
M examples/double_gyre.jl | 13 ++++++-------
M examples/image.jl | 9 ++++-----
M examples/logo.jl | 25 ++++++++++++-------------
M examples/shear.jl | 3 +--
M examples/strait.jl | 38 +++++++++++++++----------------
M examples/two-grains.jl | 6 ++----
M src/atmosphere.jl | 23 +++++++++++------------
M src/contact_search.jl | 7 +++----
M src/grain.jl | 5 ++---
M src/grid.jl | 36 +++++++++++++++----------------
M src/interaction.jl | 3 +--
M src/io.jl | 84 +++++++++++++++----------------
M src/ocean.jl | 40 ++++++++++++++++----------------
M src/packing.jl | 9 ++++-----
M src/simulation.jl | 9 ++++-----
M src/temporal.jl | 6 ++----
M src/temporal_integration.jl | 1 -
M src/wall.jl | 6 ++----
M test/grain.jl | 2 +-
M test/vtk.jl | 4 ++--
21 files changed, 153 insertions(+), 177 deletions(-)
---
(DIR) diff --git a/REQUIRE b/REQUIRE
t@@ -1,4 +1,3 @@
julia 1.0
WriteVTK
Documenter
-Compat 0.63.0
(DIR) diff --git a/examples/double_gyre.jl b/examples/double_gyre.jl
t@@ -1,7 +1,6 @@
#!/usr/bin/env julia
import Granular
-import Compat
-using Compat.Random
+using Random
sim = Granular.createSimulation(id="double_gyre")
t@@ -36,7 +35,7 @@ r = minimum(L[1:2]./n[1:2])/2.
h = 1.
## N-S wall segments
-for y in Compat.range(r, stop=L[2]-r, length=Int(round((L[2] - 2.*r)/(r*2))))
+for y in range(r, stop=L[2]-r, length=Int(round((L[2] - 2.*r)/(r*2))))
Granular.addGrainCylindrical!(sim, [r, y], r, h, fixed=true,
verbose=false)
Granular.addGrainCylindrical!(sim, [L[1]-r, y], r, h, fixed=true,
t@@ -44,8 +43,8 @@ for y in Compat.range(r, stop=L[2]-r, length=Int(round((L[2] - 2.*r)/(r*2))))
end
## E-W wall segments
-for x in Compat.range(3.*r, stop=L[1]-3.*r,
- length=Int(round((L[1] - 6.*r)/(r*2))))
+for x in range(3.*r, stop=L[1]-3.*r,
+ length=Int(round((L[1] - 6.*r)/(r*2))))
Granular.addGrainCylindrical!(sim, [x, r], r, h, fixed=true,
verbose=false)
Granular.addGrainCylindrical!(sim, [x, L[2]-r], r, h, fixed=true,
t@@ -53,7 +52,7 @@ for x in Compat.range(3.*r, stop=L[1]-3.*r,
end
n_walls = length(sim.grains)
-Compat.@info "added $(n_walls) fixed ice floes as walls"
+@info "added $(n_walls) fixed ice floes as walls"
t@@ -77,7 +76,7 @@ for y in (4.*r + noise_amplitude):(2.*r + floe_padding):(L[2] - 4.*r -
end
end
n = length(sim.grains) - n_walls
-Compat.@info "added $(n) ice floes"
+@info "added $n ice floes"
# Remove old simulation files
Granular.removeSimulationFiles(sim)
(DIR) diff --git a/examples/image.jl b/examples/image.jl
t@@ -3,8 +3,7 @@
import Granular
import FileIO
import Colors
-import Compat
-using Compat.Random
+using Random
const verbose = true
t@@ -45,7 +44,7 @@ const h = .5
sim = Granular.createSimulation(id="image")
-Compat.@info "nx = $nx, ny = $ny"
+@info "nx = $nx, ny = $ny"
for iy=1:size(img_bw, 1)
for ix=1:size(img_bw, 2)
t@@ -109,7 +108,7 @@ end
r = dx/4.
## N-S wall segments
-for y in Compat.range(r, stop=Ly-r, length=Int(round((Ly - 2.*r)/(r*2))))
+for y in range(r, stop=Ly-r, length=Int(round((Ly - 2.*r)/(r*2))))
Granular.addGrainCylindrical!(sim, [r, y], r, h, fixed=true,
youngs_modulus=youngs_modulus,
verbose=false)
t@@ -119,7 +118,7 @@ for y in Compat.range(r, stop=Ly-r, length=Int(round((Ly - 2.*r)/(r*2))))
end
## E-W wall segments
-for x in Compat.range(3.*r, stop=Lx-3.*r, length=Int(round((Lx - 6.*r)/(r*2))))
+for x in range(3.*r, stop=Lx-3.*r, length=Int(round((Lx - 6.*r)/(r*2))))
Granular.addGrainCylindrical!(sim, [x, r], r, h, fixed=true,
youngs_modulus=youngs_modulus,
verbose=false)
(DIR) diff --git a/examples/logo.jl b/examples/logo.jl
t@@ -1,8 +1,7 @@
#!/usr/bin/env julia
import Granular
-import Compat
-using Compat.Random
+using Random
const verbose = true
t@@ -55,7 +54,7 @@ const youngs_modulus = 2e6
sim = Granular.createSimulation(id="logo")
print(logo_string)
-Compat.@info "nx = $nx, ny = $ny"
+@info "nx = $nx, ny = $ny"
for iy=1:length(logo_string_split)
for ix=1:length(logo_string_split[iy])
t@@ -139,23 +138,23 @@ end
r = dx/4.
## N-S wall segments
-for y in Compat.range(r, stop=Ly-r, length=Int(round((Ly - 2.*r)/(r*2))))
+for y in range(r, stop=Ly-r, length=Int(round((Ly - 2.*r)/(r*2))))
Granular.addGrainCylindrical!(sim, [r, y], r, h, fixed=true,
- youngs_modulus=youngs_modulus,
- verbose=false)
+ youngs_modulus=youngs_modulus,
+ verbose=false)
Granular.addGrainCylindrical!(sim, [Lx-r, y], r, h, fixed=true,
- youngs_modulus=youngs_modulus,
- verbose=false)
+ youngs_modulus=youngs_modulus,
+ verbose=false)
end
## E-W wall segments
-for x in Compat.range(3.*r, stop=Lx-3.*r, length=Int(round((Lx - 6.*r)/(r*2))))
+for x in range(3.*r, stop=Lx-3.*r, length=Int(round((Lx - 6.*r)/(r*2))))
Granular.addGrainCylindrical!(sim, [x, r], r, h, fixed=true,
- youngs_modulus=youngs_modulus,
- verbose=false)
+ youngs_modulus=youngs_modulus,
+ verbose=false)
Granular.addGrainCylindrical!(sim, [x, Ly-r], r, h, fixed=true,
- youngs_modulus=youngs_modulus,
- verbose=false)
+ youngs_modulus=youngs_modulus,
+ verbose=false)
end
(DIR) diff --git a/examples/shear.jl b/examples/shear.jl
t@@ -3,7 +3,6 @@ ENV["MPLBACKEND"] = "Agg"
import Granular
import JLD
import PyPlot
-import Compat
################################################################################
#### SIMULATION PARAMETERS #
t@@ -133,7 +132,7 @@ end
Granular.addWallLinearFrictionless!(sim, [0., 1.], y_top,
bc="normal stress", normal_stress=-N,
contact_viscosity_normal=1e3)
-Compat.@info "Placing top wall at y=$y_top"
+@info "Placing top wall at y=$y_top"
# Resize the grid to span the current state
Granular.fitGridToGrains!(sim, sim.ocean)
(DIR) diff --git a/examples/strait.jl b/examples/strait.jl
t@@ -1,7 +1,6 @@
#!/usr/bin/env julia
import SeaIce
-import Compat
-using Compat.Random
+using Random
sim = SeaIce.createSimulation(id="strait")
n = [10, 10, 2]
t@@ -24,15 +23,15 @@ h = 1.
## N-S segments
r_walls = r_min
-for y in Compat.range((L[2] - Ly_constriction)/2.,
- stop=Ly_constriction + (L[2] - Ly_constriction)/2.,
- length=Int(round(Ly_constriction/(r_walls*2))))
+for y in range((L[2] - Ly_constriction)/2.,
+ stop=Ly_constriction + (L[2] - Ly_constriction)/2.,
+ length=Int(round(Ly_constriction/(r_walls*2))))
SeaIce.addIceFloeCylindrical!(sim, [(Lx - Lx_constriction)/2., y], r_walls,
h, fixed=true, verbose=false)
end
-for y in Compat.range((L[2] - Ly_constriction)/2.,
- stop=Ly_constriction + (L[2] - Ly_constriction)/2.,
- length=Int(round(Ly_constriction/(r_walls*2))))
+for y in range((L[2] - Ly_constriction)/2.,
+ stop=Ly_constriction + (L[2] - Ly_constriction)/2.,
+ length=Int(round(Ly_constriction/(r_walls*2))))
SeaIce.addIceFloeCylindrical!(sim,
[Lx_constriction +
(L[1] - Lx_constriction)/2., y], r_walls, h,
t@@ -43,9 +42,9 @@ dx = 2.*r_walls*sin(atan((Lx - Lx_constriction)/(L[2] - Ly_constriction)))
## NW diagonal
x = r_walls:dx:((Lx - Lx_constriction)/2.)
-y = Compat.range(L[2] - r_walls,
- stop=(L[2] - Ly_constriction)/2. + Ly_constriction + r_walls,
- length=length(x))
+y = range(L[2] - r_walls,
+ stop=(L[2] - Ly_constriction)/2. + Ly_constriction + r_walls,
+ length=length(x))
for i in 1:length(x)
SeaIce.addIceFloeCylindrical!(sim, [x[i], y[i]], r_walls, h, fixed=true,
verbose=false)
t@@ -53,9 +52,9 @@ end
## NE diagonal
x = (L[1] - r_walls):(-dx):((Lx - Lx_constriction)/2. + Lx_constriction)
-y = Compat.range(L[2] - r_walls,
- stop=(L[2] - Ly_constriction)/2. + Ly_constriction + r_walls,
- length=length(x))
+y = range(L[2] - r_walls,
+ stop=(L[2] - Ly_constriction)/2. + Ly_constriction + r_walls,
+ length=length(x))
for i in 1:length(x)
SeaIce.addIceFloeCylindrical!(sim, [x[i], y[i]], r_walls, h, fixed=true,
verbose=false)
t@@ -63,8 +62,8 @@ end
## SW diagonal
x = r_walls:dx:((Lx - Lx_constriction)/2.)
-y = Compat.range(r, stop=(L[2] - Ly_constriction)/2. - r_walls,
- length=length(x))
+y = range(r, stop=(L[2] - Ly_constriction)/2. - r_walls,
+ length=length(x))
for i in 1:length(x)
SeaIce.addIceFloeCylindrical!(sim, [x[i], y[i]], r_walls, h, fixed=true,
verbose=false)
t@@ -72,15 +71,14 @@ end
## SE diagonal
x = (L[1] - r_walls):(-dx):((Lx - Lx_constriction)/2. + Lx_constriction)
-y = Compat.range(r_walls, stop=(L[2] - Ly_constriction)/2. - r_walls,
- length=length(x))
+y = range(r_walls, stop=(L[2] - Ly_constriction)/2. - r_walls, length=length(x))
for i in 1:length(x)
SeaIce.addIceFloeCylindrical!(sim, [x[i], y[i]], r_walls, h, fixed=true,
verbose=false)
end
n_walls = length(sim.ice_floes)
-Compat.@info "added $(n_walls) fixed ice floes as walls"
+@info "added $(n_walls) fixed ice floes as walls"
# Initialize ice floes in wedge north of the constriction
iy = 1
t@@ -114,7 +112,7 @@ for y in (L[2] - r - noise_amplitude):(-(2.*r + floe_padding)):((L[2] -
iy += 1
end
n = length(sim.ice_floes) - n_walls
-Compat.@info "added $(n) ice floes"
+@info "added $n ice floes"
# Remove old simulation files
SeaIce.removeSimulationFiles(sim)
(DIR) diff --git a/examples/two-grains.jl b/examples/two-grains.jl
t@@ -1,6 +1,5 @@
#!/usr/bin/env julia
import Granular
-import Compat
# Create the simulation object which, among other things, will hold all
# imformation on the simulated grains. You can call this object whatever you
t@@ -36,8 +35,7 @@ Granular.run!(sim)
E_kin_after = Granular.totalGrainKineticTranslationalEnergy(sim)
# Report these values to console
-Compat.@info "Kinetic energy before: $E_kin_before J"
-Compat.@info "Kinetic energy after: $E_kin_after J"
-
+@info "Kinetic energy before: $E_kin_before J"
+@info "Kinetic energy after: $E_kin_after J"
Granular.render(sim, animation=true)
(DIR) diff --git a/src/atmosphere.jl b/src/atmosphere.jl
t@@ -1,6 +1,5 @@
-import Compat
-using Compat.Test
-using Compat.LinearAlgebra
+using Test
+using LinearAlgebra
export createEmptyAtmosphere
"Returns empty ocean type for initialization purposes."
t@@ -81,22 +80,22 @@ function createRegularAtmosphereGrid(n::Vector{Int},
bc_east::Integer = 1,
bc_north::Integer = 1)
- xq = repeat(Compat.range(origo[1], stop=origo[1] + L[1], length=n[1] + 1),
+ xq = repeat(range(origo[1], stop=origo[1] + L[1], length=n[1] + 1),
outer=[1, n[2] + 1])
- yq = repeat(Compat.range(origo[2], stop=origo[2] + L[2], length=n[2] + 1)',
+ yq = repeat(range(origo[2], stop=origo[2] + L[2], length=n[2] + 1)',
outer=[n[1] + 1, 1])
dx = L./n
- xh = repeat(Compat.range(origo[1] + .5*dx[1],
- stop=origo[1] + L[1] - .5*dx[1],
- length=n[1]),
+ xh = repeat(range(origo[1] + .5*dx[1],
+ stop=origo[1] + L[1] - .5*dx[1],
+ length=n[1]),
outer=[1, n[2]])
- yh = repeat(Compat.range(origo[2] + .5*dx[2],
- stop=origo[1] + L[2] - .5*dx[2],
- length=n[2])',
+ yh = repeat(range(origo[2] + .5*dx[2],
+ stop=origo[1] + L[2] - .5*dx[2],
+ length=n[2])',
outer=[n[1], 1])
- zl = -Compat.range(.5*dx[3], stop=L[3] - .5*dx[3], length=n[3])
+ zl = -range(.5*dx[3], stop=L[3] - .5*dx[3], length=n[3])
u = zeros(n[1] + 1, n[2] + 1, n[3], length(time))
v = zeros(n[1] + 1, n[2] + 1, n[3], length(time))
(DIR) diff --git a/src/contact_search.jl b/src/contact_search.jl
t@@ -1,5 +1,4 @@
-import Compat
-using Compat.LinearAlgebra
+using LinearAlgebra
## Contact mapping
export findContacts!
t@@ -308,9 +307,9 @@ function checkAndAddContact!(sim::Simulation, i::Int, j::Int,
# Test if this contact exceeds the number of contacts
if ic == (sim.Nc_max + 1)
for ic=1:sim.Nc_max
- Compat.@warn "grains[$i].contacts[$ic] = " *
+ @warn "grains[$i].contacts[$ic] = " *
"$(sim.grains[i].contacts[ic])"
- Compat.@warn "grains[$i].contact_age[$ic] = " *
+ @warn "grains[$i].contact_age[$ic] = " *
"$(sim.grains[i].contact_age[ic])"
end
error("contact $i-$j exceeds max. number of " *
(DIR) diff --git a/src/grain.jl b/src/grain.jl
t@@ -1,8 +1,7 @@
## Manage grains in the model
-import Compat
-using Compat.Test
-using Compat.LinearAlgebra
+using Test
+using LinearAlgebra
export addGrainCylindrical!
"""
(DIR) diff --git a/src/grid.jl b/src/grid.jl
t@@ -1,7 +1,6 @@
import Random
-using Compat
-using Compat.LinearAlgebra
-using Compat.Random
+using LinearAlgebra
+using Random
"""
bilinearInterpolation(field, x_tilde, y_tilde, i, j, k, it)
t@@ -218,7 +217,7 @@ function sortGrainsInGrid!(simulation::Simulation, grid::Any; verbose=true)
i > grid.n[1] || j > grid.n[2]))
if verbose
- Compat.@info "Disabling grain $idx at pos (" *
+ @info "Disabling grain $idx at pos (" *
"$(simulation.grains[idx].lin_pos))"
end
disableGrain!(simulation, idx)
t@@ -595,7 +594,7 @@ function findEmptyPositionInGridCell(simulation::Simulation,
y_tilde = rand()
bilinearInterpolation!(pos, grid.xq, grid.yq, x_tilde, y_tilde, i, j)
if verbose
- Compat.@info "trying position $pos in cell $i,$j"
+ @info "trying position $pos in cell $i,$j"
end
# do not penetrate outside of grid boundaries
t@@ -629,8 +628,7 @@ function findEmptyPositionInGridCell(simulation::Simulation,
if overlap < 0.
if verbose
- Compat.@info "overlap with $grain_idx in " *
- "cell $i,$j"
+ @info "overlap with $grain_idx in cell $i,$j"
end
overlap_found = true
break
t@@ -652,12 +650,12 @@ function findEmptyPositionInGridCell(simulation::Simulation,
if spot_found
if verbose
- Compat.@info "Found position $pos in cell $i,$j"
+ @info "Found position $pos in cell $i,$j"
end
return pos
else
if verbose
- Compat.@warn "could not insert an grain into " *
+ @warn "could not insert an grain into " *
"$(typeof(grid)) grid cell ($i, $j)"
end
return false
t@@ -743,22 +741,22 @@ function setGridBoundaryConditions!(grid::Any,
error("Mode '$mode' not recognized as a valid boundary condition type")
end
- if Compat.occursin("west", grid_face) || Compat.occursin("-x", grid_face)
+ if occursin("west", grid_face) || occursin("-x", grid_face)
grid.bc_west = grid_bc_flags[mode]
something_changed = true
end
- if Compat.occursin("south", grid_face) || Compat.occursin("-y", grid_face)
+ if occursin("south", grid_face) || occursin("-y", grid_face)
grid.bc_south = grid_bc_flags[mode]
something_changed = true
end
- if Compat.occursin("east", grid_face) || Compat.occursin("+x", grid_face)
+ if occursin("east", grid_face) || occursin("+x", grid_face)
grid.bc_east = grid_bc_flags[mode]
something_changed = true
end
- if Compat.occursin("north", grid_face) || Compat.occursin("+y", grid_face)
+ if occursin("north", grid_face) || occursin("+y", grid_face)
grid.bc_north = grid_bc_flags[mode]
something_changed = true
end
t@@ -1044,7 +1042,7 @@ function fitGridToGrains!(simulation::Simulation, grid::Any;
end
if verbose
- Compat.@info "Created regular $(typeof(grid)) grid from " *
+ @info "Created regular $(typeof(grid)) grid from " *
"[$min_x, $min_y] to [$max_x, $max_y] " *
"with a cell size of $dx ($n)."
end
t@@ -1055,14 +1053,14 @@ end
function findPorosity!(sim::Simulation, grid::Any; verbose::Bool=true)
if !isassigned(grid.grain_list)
- Compat.@info "Sorting grains in grid"
+ @info "Sorting grains in grid"
sortGrainsInGrid!(sim, grid, verbose=verbose)
end
- @compat sw = Vector{Float64}(undef, 2)
- @compat se = Vector{Float64}(undef, 2)
- @compat ne = Vector{Float64}(undef, 2)
- @compat nw = Vector{Float64}(undef, 2)
+ sw = Vector{Float64}(undef, 2)
+ se = Vector{Float64}(undef, 2)
+ ne = Vector{Float64}(undef, 2)
+ nw = Vector{Float64}(undef, 2)
cell_area = 0.0
p = zeros(2)
r = 0.0
(DIR) diff --git a/src/interaction.jl b/src/interaction.jl
t@@ -1,6 +1,5 @@
## Interaction functions
-import Compat
-using Compat.LinearAlgebra
+using LinearAlgebra
export interact!
"""
(DIR) diff --git a/src/io.jl b/src/io.jl
t@@ -1,13 +1,11 @@
import WriteVTK
-import Compat
-using Compat.LinearAlgebra
-using Compat.DelimitedFiles
-using Compat.Dates
-
+import Pkg
+import Dates
+using DelimitedFiles
hasJLD = false
if VERSION < v"0.7.0-alpha"
- if typeof(Compat.Pkg.installed("JLD")) == VersionNumber
+ if typeof(Pkg.installed("JLD")) == VersionNumber
import JLD
hasJLD = true
end
t@@ -37,7 +35,7 @@ function writeSimulation(simulation::Simulation;
folder::String=".",
verbose::Bool=true)
if !hasJLD
- Compat.@warn "Package JLD not found. " *
+ @warn "Package JLD not found. " *
"Simulation save/read not supported. " *
"Please install JLD and its " *
"requirements with `Pkg.add(\"JLD\")`."
t@@ -52,7 +50,7 @@ function writeSimulation(simulation::Simulation;
JLD.save(filename, "simulation", simulation)
if verbose
- Compat.@info "simulation written to $filename"
+ @info "simulation written to $filename"
end
end
nothing
t@@ -73,7 +71,7 @@ Return `Simulation` content read from disk using the JDL format.
function readSimulation(filename::String;
verbose::Bool=true)
if !hasJLD
- Compat.@warn "Package JLD not found. " *
+ @warn "Package JLD not found. " *
"Simulation save/read not supported. " *
"Please install JLD and its " *
"requirements with `Pkg.add(\"JLD\")`."
t@@ -81,7 +79,7 @@ function readSimulation(filename::String;
else
return JLD.load(filename, "simulation")
if verbose
- Compat.@info "Read simulation from $filename"
+ @info "Read simulation from $filename"
end
end
end
t@@ -104,7 +102,7 @@ function readSimulation(simulation::Simulation;
step::Integer = -1,
verbose::Bool = true)
if !hasJLD
- Compat.@warn "Package JLD not found. Simulation save/read not supported. " *
+ @warn "Package JLD not found. Simulation save/read not supported. " *
"Please install JLD and its " *
"requirements with `Pkg.add(\"JLD\")`."
nothing
t@@ -114,7 +112,7 @@ function readSimulation(simulation::Simulation;
end
filename = string(simulation.id, "/", simulation.id, ".$step.jld")
if verbose
- Compat.@info "Read simulation from $filename"
+ @info "Read simulation from $filename"
end
return JLD.load(filename, "simulation")
end
t@@ -139,7 +137,7 @@ function writeSimulationStatus(simulation::Simulation;
simulation.time/simulation.time_total*100.
float(simulation.file_number)])
if verbose
- Compat.@info "Wrote status to $filename"
+ @info "Wrote status to $filename"
end
nothing
end
t@@ -165,7 +163,7 @@ function readSimulationStatus(simulation_id::String;
data = readdlm(filename)
if verbose
- Compat.@info "$simulation_id:\n" *
+ @info "$simulation_id:\n" *
" time: $(data[1]) s\n" *
" complete: $(data[2])%\n" *
" last output file: $(Int(round(data[3])))\n"
t@@ -233,12 +231,12 @@ function status(folder::String=".";
status_files = String[]
println()
- println(Dates.format(DateTime(now()), Dates.RFC1123Format))
+ println(Dates.format(Dates.DateTime(Dates.now()), Dates.RFC1123Format))
for (root, dirs, files) in walkdir(folder, follow_symlinks=false)
for file in files
- if Compat.occursin(".status.txt", file)
+ if occursin(".status.txt", file)
push!(status_files, joinpath(root, file))
end
end
t@@ -246,7 +244,7 @@ function status(folder::String=".";
if length(status_files) > 0
- if Compat.Sys.iswindows()
+ if Sys.iswindows()
cols = 80
else
cols = parse(Int, read(`tput cols`, String))
t@@ -258,14 +256,14 @@ function status(folder::String=".";
println()
left_label_width = 36
- Compat.printstyled("simulation folder ", color=:default)
+ printstyled("simulation folder ", color=:default)
right_labels_width = 22
for i=18:cols-right_labels_width
print(' ')
end
- Compat.printstyled("time ", color=time_color)
- Compat.printstyled("complete ", color=percentage_color)
- Compat.printstyled("files\n", color=lastfile_color)
+ printstyled("time ", color=time_color)
+ printstyled("complete ", color=percentage_color)
+ printstyled("files\n", color=lastfile_color)
for i=1:cols
print('-')
end
t@@ -274,15 +272,15 @@ function status(folder::String=".";
for file in status_files
data = readdlm(file)
- id = Compat.replace(file, ".status.txt" => "")
- id = Compat.replace(id, "./" => "")
- id = Compat.replace(id, r".*/" => "")
+ id = replace(file, ".status.txt" => "")
+ id = replace(id, "./" => "")
+ id = replace(id, r".*/" => "")
percentage = @sprintf "%9.0f%%" data[2]
lastfile = @sprintf "%7d" data[3]
if data[2] < 99.
- Compat.printstyled("$id", color=id_color_in_progress)
+ printstyled("$id", color=id_color_in_progress)
else
- Compat.printstyled("$id", color=id_color_complete)
+ printstyled("$id", color=id_color_complete)
end
right_fields_width = 25
for i=length(id):cols-right_fields_width
t@@ -297,9 +295,9 @@ function status(folder::String=".";
else # days
time = @sprintf "%6.2fd" data[1]/(60.0 * 60.0 * 24.0)
end
- Compat.printstyled("$time", color=time_color)
- Compat.printstyled("$percentage", color=percentage_color)
- Compat.printstyled("$lastfile\n", color=lastfile_color)
+ printstyled("$time", color=time_color)
+ printstyled("$percentage", color=percentage_color)
+ printstyled("$lastfile\n", color=lastfile_color)
if visualize
sim = createSimulation(id)
t@@ -313,7 +311,7 @@ function status(folder::String=".";
println()
end
else
- Compat.@warn "no simulations found in $(pwd())/$folder"
+ @warn "no simulations found in $(pwd())/$folder"
end
if loop && t_int > 0
t@@ -485,7 +483,7 @@ function writeGrainVTK(simulation::Simulation,
outfiles = WriteVTK.vtk_save(vtkfile)
if verbose
- Compat.@info "Output file: $(outfiles[1])"
+ @info "Output file: $(outfiles[1])"
end
nothing
end
t@@ -849,7 +847,7 @@ function writeGridVTK(grid::Any,
outfiles = WriteVTK.vtk_save(vtkfile)
if verbose
- Compat.@info "Output file: $(outfiles[1])"
+ @info "Output file: $(outfiles[1])"
end
nothing
end
t@@ -1122,7 +1120,7 @@ FrameWindow=[0, $(simulation.file_number)])
end
end
if verbose
- Compat.@info "$(filename) written, execute with " *
+ @info "$(filename) written, execute with " *
"'pvpython $(vtk_folder)/$(simulation.id).py'"
end
end
t@@ -1170,8 +1168,8 @@ function render(simulation::Simulation; pvpython::String="pvpython",
rm("$(simulation.id)/$(simulation.id).avi")
end
catch return_signal
- if isa(return_signal, Base.UVError)
- Compat.@warn "Could not run external ffmpeg command, " *
+ if isa(return_signal, IOError)
+ @warn "Could not run external ffmpeg command, " *
"skipping conversion from " *
"$(simulation.id)/$(simulation.id).avi to mp4."
end
t@@ -1202,14 +1200,14 @@ function render(simulation::Simulation; pvpython::String="pvpython",
$(simulation.id)/$(simulation.id)-reverse.gif`)
end
catch return_signal
- if isa(return_signal, Base.UVError)
- Compat.@warn "Skipping gif merge since `$convert` " *
+ if isa(return_signal, IOError)
+ @warn "Skipping gif merge since `$convert` " *
"was not found."
end
end
end
catch return_signal
- if isa(return_signal, Base.UVError)
+ if isa(return_signal, IOError)
error("`pvpython` was not found.")
end
end
t@@ -1293,7 +1291,7 @@ function plotGrainSizeDistribution(simulation::Simulation;
gnuplotscript = Base.Filesystem.tempname()
#if maximum(diameters) ≈ minimum(diameters)
- #Compat.@info "Overriding `nbins = $nbins` -> `nbins = 1`."
+ #@info "Overriding `nbins = $nbins` -> `nbins = 1`."
#nbins = 1
#end
t@@ -1320,13 +1318,13 @@ function plotGrainSizeDistribution(simulation::Simulation;
try
run(`gnuplot $gnuplotscript`)
catch return_signal
- if isa(return_signal, Base.UVError)
+ if isa(return_signal, IOError)
error("Could not launch external gnuplot process")
end
end
if verbose
- Compat.@info filename
+ @info filename
end
end
t@@ -1547,13 +1545,13 @@ function plotGrains(sim::Simulation;
try
run(`gnuplot $gnuplotscript`)
catch return_signal
- if isa(return_signal, Base.UVError)
+ if isa(return_signal, IOError)
error("Could not launch external gnuplot process")
end
end
if verbose
- Compat.@info filename
+ @info filename
end
if show_figure
(DIR) diff --git a/src/ocean.jl b/src/ocean.jl
t@@ -1,10 +1,10 @@
-import Compat
-using Compat.Test
-using Compat.LinearAlgebra
+import Pkg
+using Test
+using LinearAlgebra
hasNetCDF = false
if VERSION < v"0.7.0-alpha"
- if typeof(Compat.Pkg.installed("NetCDF")) == VersionNumber
+ if typeof(Pkg.installed("NetCDF")) == VersionNumber
import NetCDF
hasNetCDF = true
end
t@@ -16,7 +16,7 @@ else
end
end
if !hasNetCDF
- Compat.@warn "Package NetCDF not found. " *
+ @warn "Package NetCDF not found. " *
"Ocean/atmosphere grid read not supported. " *
"If required, install NetCDF and its " *
"requirements with `Pkg.add(\"NetCDF\")`."
t@@ -64,7 +64,7 @@ function readOceanNetCDF(velocity_file::String, grid_file::String;
regular_grid::Bool=false)
if !hasNetCDF
- Compat.@warn "Package NetCDF not found. " *
+ @warn "Package NetCDF not found. " *
"Ocean/atmosphere grid read not supported. " *
"Please install NetCDF and its " *
"requirements with `Pkg.add(\"NetCDF\")`."
t@@ -128,7 +128,7 @@ layer thicknesses, interface heights, and vertical coordinates.
function readOceanStateNetCDF(filename::String)
if !hasNetCDF
- Compat.@warn "Package NetCDF not found. " *
+ @warn "Package NetCDF not found. " *
"Ocean/atmosphere grid read not supported. " *
"Please install NetCDF and its " *
"requirements with `Pkg.add(\"NetCDF\")`."
t@@ -169,7 +169,7 @@ located in the simulation `INPUT/` subdirectory.
function readOceanGridNetCDF(filename::String)
if !hasNetCDF
- Compat.@warn "Package NetCDF not found. " *
+ @warn "Package NetCDF not found. " *
"Ocean/atmosphere grid read not supported. " *
"Please install NetCDF and its " *
"requirements with `Pkg.add(\"NetCDF\")`."
t@@ -296,25 +296,25 @@ function createRegularOceanGrid(n::Vector{Int},
bc_east::Integer = 1,
bc_north::Integer = 1)
- xq = repeat(Compat.range(origo[1], stop=origo[1] + L[1],
- length=n[1] + 1),
+ xq = repeat(range(origo[1], stop=origo[1] + L[1],
+ length=n[1] + 1),
outer=[1, n[2] + 1])
- yq = repeat(Compat.range(origo[2], stop=origo[2] + L[2],
- length=n[2] + 1)',
+ yq = repeat(range(origo[2], stop=origo[2] + L[2],
+ length=n[2] + 1)',
outer=[n[1] + 1, 1])
dx = L./n
- xh = repeat(Compat.range(origo[1] + .5*dx[1],
- stop=origo[1] + L[1] - .5*dx[1],
- length=n[1]),
+ xh = repeat(range(origo[1] + .5*dx[1],
+ stop=origo[1] + L[1] - .5*dx[1],
+ length=n[1]),
outer=[1, n[2]])
- yh = repeat(Compat.range(origo[2] + .5*dx[2],
- stop=origo[2] + L[2] - .5*dx[2],
- length=n[2])',
+ yh = repeat(range(origo[2] + .5*dx[2],
+ stop=origo[2] + L[2] - .5*dx[2],
+ length=n[2])',
outer=[n[1], 1])
- zl = -Compat.range(.5*dx[3], stop=L[3] - .5*dx[3], length=n[3])
- zi = -Compat.range(0., stop=L[3], length=n[3] + 1)
+ zl = -range(.5*dx[3], stop=L[3] - .5*dx[3], length=n[3])
+ zi = -range(0., stop=L[3], length=n[3] + 1)
u = zeros(n[1] + 1, n[2] + 1, n[3], length(time))
v = zeros(n[1] + 1, n[2] + 1, n[3], length(time))
(DIR) diff --git a/src/packing.jl b/src/packing.jl
t@@ -1,8 +1,7 @@
## Functions for creating grain packings
-import Compat
import Random
-using Compat.LinearAlgebra
-using Compat.Random
+using LinearAlgebra
+using Random
export regularPacking!
"""
t@@ -355,7 +354,7 @@ function irregularPacking!(simulation::Simulation;
if verbose
println("")
- Compat.@info "Generated $(length(simulation.grains) - np_init) points"
+ @info "Generated $(length(simulation.grains) - np_init) points"
end
end
t@@ -407,7 +406,7 @@ function rasterPacking!(sim::Simulation,
end
end
if verbose
- Compat.@info "Generated $(length(sim.grains) - np_init) points"
+ @info "Generated $(length(sim.grains) - np_init) points"
end
end
(DIR) diff --git a/src/simulation.jl b/src/simulation.jl
t@@ -1,5 +1,4 @@
-import Compat
-using Compat.Printf
+using Printf
## General simulation functions
t@@ -112,7 +111,7 @@ function run!(simulation::Simulation;
if simulation.ocean.xq ≈ simulation.atmosphere.xq &&
simulation.ocean.yq ≈ simulation.atmosphere.yq
if verbose
- Compat.@info "identical ocean and atmosphere grids, " *
+ @info "identical ocean and atmosphere grids, " *
"turning on grid optimizations"
end
simulation.atmosphere.collocated_with_ocean_grid = true
t@@ -219,7 +218,7 @@ function addGrain!(simulation::Simulation,
push!(simulation.grains, grain)
if verbose
- Compat.@info "Added grain $(length(simulation.grains))"
+ @info "Added grain $(length(simulation.grains))"
end
nothing
end
t@@ -239,7 +238,7 @@ function addWall!(simulation::Simulation,
push!(simulation.walls, wall)
if verbose
- Compat.@info "Added wall $(length(simulation.walls))"
+ @info "Added wall $(length(simulation.walls))"
end
nothing
end
(DIR) diff --git a/src/temporal.jl b/src/temporal.jl
t@@ -1,5 +1,3 @@
-import Compat
-
export setTotalTime!
"""
setTotalTime!(simulation::Simulation, t::Float64)
t@@ -56,7 +54,7 @@ this value is zero or negative, no output files will be written.
function setOutputFileInterval!(simulation::Simulation, t::Float64;
verbose=true)
if t <= 0.0 && verbose
- Compat.@info "No output files will be written"
+ @info "No output files will be written"
end
simulation.file_time_step = t
nothing
t@@ -163,7 +161,7 @@ function setTimeStep!(simulation::Simulation;
end
if verbose
- Compat.@info "Time step length t=$(simulation.time_step) s"
+ @info "Time step length t=$(simulation.time_step) s"
end
nothing
end
(DIR) diff --git a/src/temporal_integration.jl b/src/temporal_integration.jl
t@@ -1,4 +1,3 @@
-import Compat
export updateGrainKinematics!
"""
(DIR) diff --git a/src/wall.jl b/src/wall.jl
t@@ -1,7 +1,5 @@
## Manage dynamic walls in the model
-import Compat
-
export addWallLinearFrictionless!
"""
function addWallLinear!(simulation, normal, pos[, bc, mass, thickness,
t@@ -112,7 +110,7 @@ function addWallLinearFrictionless!(simulation::Simulation,
mass += grain.mass
end
if verbose
- Compat.@info "Setting wall mass to total grain mass: $mass kg"
+ @info "Setting wall mass to total grain mass: $mass kg"
end
end
t@@ -129,7 +127,7 @@ function addWallLinearFrictionless!(simulation::Simulation,
end
end
if verbose
- Compat.@info "Setting wall thickness to max grain thickness: $thickness m"
+ @info "Setting wall thickness to max grain thickness: $thickness m"
end
end
(DIR) diff --git a/test/grain.jl b/test/grain.jl
t@@ -33,7 +33,7 @@ global gnuplot = true
try
run(`gnuplot --version`)
catch return_signal
- if isa(return_signal, Base.UVError)
+ if isa(return_signal, IOError)
@warn "Skipping plotting routines: Could not launch gnuplot process"
global gnuplot = false
end
(DIR) diff --git a/test/vtk.jl b/test/vtk.jl
t@@ -76,7 +76,7 @@ Granular.writeParaviewPythonScript(sim,
try
run(`pvpython $(sim.id)/$(sim.id).py`)
catch return_signal
- if !isa(return_signal, Base.UVError)
+ if !isa(return_signal, IOError)
@test isfile("$(sim.id)/$(sim.id).avi")
end
end
t@@ -87,7 +87,7 @@ Granular.writeParaviewPythonScript(sim,
try
run(`pvpython $(sim.id)/$(sim.id).py`)
catch return_signal
- if !isa(return_signal, Base.UVError)
+ if !isa(return_signal, IOError)
@test isfile("$(sim.id)/$(sim.id).0000.png")
@test isfile("$(sim.id)/$(sim.id).0014.png")
Granular.render(sim)