itadd extra parameters to plotting function - cosmo - front and backend for Markov-Chain Monte Carlo inversion of cosmogenic nuclide concentrations Err mx1.adamsgaard.dk 70 hgit clone git://src.adamsgaard.dk/cosmo URL:git://src.adamsgaard.dk/cosmo mx1.adamsgaard.dk 70 1Log /src/log.gph mx1.adamsgaard.dk 70 1Files /src/files.gph mx1.adamsgaard.dk 70 1Refs /src/refs.gph mx1.adamsgaard.dk 70 1README /src/file/README.md.gph mx1.adamsgaard.dk 70 1LICENSE /src/file/LICENSE.gph mx1.adamsgaard.dk 70 i--- Err mx1.adamsgaard.dk 70 1commit 762780b1231bd44f056fc0d47cd4203463d5d3b8 /src/commit/762780b1231bd44f056fc0d47cd4203463d5d3b8.gph mx1.adamsgaard.dk 70 1parent 49eb5cb6f34627f32882fe2d6c44a1d3d9d0700b /src/commit/49eb5cb6f34627f32882fe2d6c44a1d3d9d0700b.gph mx1.adamsgaard.dk 70 hAuthor: Anders Damsgaard URL:mailto:anders.damsgaard@geo.au.dk mx1.adamsgaard.dk 70 iDate: Tue, 1 Dec 2015 12:28:16 +0100 Err mx1.adamsgaard.dk 70 i Err mx1.adamsgaard.dk 70 iadd extra parameters to plotting function Err mx1.adamsgaard.dk 70 i Err mx1.adamsgaard.dk 70 iDiffstat: Err mx1.adamsgaard.dk 70 i M matlab/file_scanner_mcmc_starter.m | 17 +++++++++++++++-- Err mx1.adamsgaard.dk 70 i M matlab/generate_plots.m | 25 +++++++++++++++++++------ Err mx1.adamsgaard.dk 70 i Err mx1.adamsgaard.dk 70 i2 files changed, 34 insertions(+), 8 deletions(-) Err mx1.adamsgaard.dk 70 i--- Err mx1.adamsgaard.dk 70 1diff --git a/matlab/file_scanner_mcmc_starter.m b/matlab/file_scanner_mcmc_starter.m /src/file/matlab/file_scanner_mcmc_starter.m.gph mx1.adamsgaard.dk 70 it@@ -115,8 +115,21 @@ while 1 Err mx1.adamsgaard.dk 70 i Err mx1.adamsgaard.dk 70 i % generate plots Err mx1.adamsgaard.dk 70 i %CompareWalks2(Ss, save_file) Err mx1.adamsgaard.dk 70 i- generate_plots(Ss, record, matlab_scripts_folder, ... Err mx1.adamsgaard.dk 70 i- save_file, graphics_formats, show_figures); Err mx1.adamsgaard.dk 70 i+ generate_plots(Ss, matlab_scripts_folder, ... Err mx1.adamsgaard.dk 70 i+ save_file, graphics_formats, show_figures, ... Err mx1.adamsgaard.dk 70 i+ sample_id, name, email, lat, long, ... Err mx1.adamsgaard.dk 70 i+ be_conc, al_conc, c_conc, ne_conc, ... Err mx1.adamsgaard.dk 70 i+ be_uncer, al_uncer, c_uncer, ne_uncer, ... Err mx1.adamsgaard.dk 70 i+ zobs, ... Err mx1.adamsgaard.dk 70 i+ be_prod_spall, al_prod_spall, c_prod_spall, ne_prod_spall, ... Err mx1.adamsgaard.dk 70 i+ be_prod_muons, al_prod_muons, c_prod_muons, ne_prod_muons, ... Err mx1.adamsgaard.dk 70 i+ rock_density, ... Err mx1.adamsgaard.dk 70 i+ epsilon_gla_min, epsilon_gla_max, ... Err mx1.adamsgaard.dk 70 i+ epsilon_int_min, epsilon_int_max, ... Err mx1.adamsgaard.dk 70 i+ t_degla_min, t_degla_max, ... Err mx1.adamsgaard.dk 70 i+ record, ... Err mx1.adamsgaard.dk 70 i+ record_threshold_min, record_threshold_max, ... Err mx1.adamsgaard.dk 70 i+ nwalkers); Err mx1.adamsgaard.dk 70 i Err mx1.adamsgaard.dk 70 i % close all figures Err mx1.adamsgaard.dk 70 i close all; Err mx1.adamsgaard.dk 70 1diff --git a/matlab/generate_plots.m b/matlab/generate_plots.m /src/file/matlab/generate_plots.m.gph mx1.adamsgaard.dk 70 it@@ -1,5 +1,18 @@ Err mx1.adamsgaard.dk 70 i-function generate_plots(Ss, record, matlab_scripts_folder,... Err mx1.adamsgaard.dk 70 i- save_file, formats, show_figures) Err mx1.adamsgaard.dk 70 i+function generate_plots(Ss, matlab_scripts_folder,... Err mx1.adamsgaard.dk 70 i+ save_file, formats, show_figures, ... Err mx1.adamsgaard.dk 70 i+ sample_id, name, email, lat, long, ... Err mx1.adamsgaard.dk 70 i+ be_conc, al_conc, c_conc, ne_conc, ... Err mx1.adamsgaard.dk 70 i+ be_uncer, al_uncer, c_uncer, ne_uncer, ... Err mx1.adamsgaard.dk 70 i+ zobs, ... Err mx1.adamsgaard.dk 70 i+ be_prod_spall, al_prod_spall, c_prod_spall, ne_prod_spall, ... Err mx1.adamsgaard.dk 70 i+ be_prod_muons, al_prod_muons, c_prod_muons, ne_prod_muons, ... Err mx1.adamsgaard.dk 70 i+ rock_density, ... Err mx1.adamsgaard.dk 70 i+ epsilon_gla_min, epsilon_gla_max, ... Err mx1.adamsgaard.dk 70 i+ epsilon_int_min, epsilon_int_max, ... Err mx1.adamsgaard.dk 70 i+ t_degla_min, t_degla_max, ... Err mx1.adamsgaard.dk 70 i+ record, ... Err mx1.adamsgaard.dk 70 i+ record_threshold_min, record_threshold_max, ... Err mx1.adamsgaard.dk 70 i+ nwalkers) Err mx1.adamsgaard.dk 70 i Err mx1.adamsgaard.dk 70 i %% Copied from m_pakke2014maj11/CompareWalks2.m Err mx1.adamsgaard.dk 70 i % Generates and saves all relevant figures Err mx1.adamsgaard.dk 70 it@@ -540,7 +553,7 @@ for iwalk = 1:Nwalkers Err mx1.adamsgaard.dk 70 i dXxfine = 0.01; Xxfinemax = 50; iz=1; %Xx may be depth or nucleide concentration or ... Err mx1.adamsgaard.dk 70 i dzfine = dXxfine; zfinemax = Xxfinemax; Err mx1.adamsgaard.dk 70 i [smoothgrid,histgrid,tsfine,Xxfine]=XxTimeDens(Xxsss,tss,dtfine,tfinemax,dXxfine,Xxfinemax,fixed_stuff,iz); Err mx1.adamsgaard.dk 70 i- pcolor(-tsfine,Xxfine,sqrt(smoothgrid)); Err mx1.adamsgaard.dk 70 i+ %pcolor(-tsfine,Xxfine,sqrt(smoothgrid)); Err mx1.adamsgaard.dk 70 i %pcolor(tsfine,Xxfine,sqrt(histgrid)); %<<\n'... Err mx1.adamsgaard.dk 70 i ' \n'... Err mx1.adamsgaard.dk 70 i ' Rock density\n'... Err mx1.adamsgaard.dk 70 i- ' ' num2str(rho) ' kg/m3\n'... Err mx1.adamsgaard.dk 70 i+ ' ' num2str(rock_density) ' kg/m3\n'... Err mx1.adamsgaard.dk 70 i ' \n'... Err mx1.adamsgaard.dk 70 i ' \n'... Err mx1.adamsgaard.dk 70 i ' εgla\n'... Err mx1.adamsgaard.dk 70 it@@ -940,8 +953,8 @@ html = [... Err mx1.adamsgaard.dk 70 i ' \n'... Err mx1.adamsgaard.dk 70 i ' \n'... Err mx1.adamsgaard.dk 70 i ' δ18Othreshold\n'... Err mx1.adamsgaard.dk 70 i- ' ' num2str(record_treshold_min) ... Err mx1.adamsgaard.dk 70 i- ' to ' num2str(record_treshold_max) ' ‰\n'... Err mx1.adamsgaard.dk 70 i+ ' ' num2str(record_threshold_min) ... Err mx1.adamsgaard.dk 70 i+ ' to ' num2str(record_threshold_max) ' ‰\n'... Err mx1.adamsgaard.dk 70 i ' \n'... Err mx1.adamsgaard.dk 70 i ' \n'... Err mx1.adamsgaard.dk 70 i ' MCMC walkers\n'... Err mx1.adamsgaard.dk 70 .