itadd exhumation plot with labels, add grant info - cosmo - front and backend for Markov-Chain Monte Carlo inversion of cosmogenic nuclide concentrations	Err	mx1.adamsgaard.dk	70
hgit clone git://src.adamsgaard.dk/cosmo	URL:git://src.adamsgaard.dk/cosmo	mx1.adamsgaard.dk	70
1Log	/src/log.gph	mx1.adamsgaard.dk	70
1Files	/src/files.gph	mx1.adamsgaard.dk	70
1Refs	/src/refs.gph	mx1.adamsgaard.dk	70
1README	/src/file/README.md.gph	mx1.adamsgaard.dk	70
1LICENSE	/src/file/LICENSE.gph	mx1.adamsgaard.dk	70
i---	Err	mx1.adamsgaard.dk	70
1commit 49b8f505c5155ef0e978195c121f92f7877b895c	/src/commit/49b8f505c5155ef0e978195c121f92f7877b895c.gph	mx1.adamsgaard.dk	70
1parent 90f980c860c18f99c0f4c3e656a155d34e5299d8	/src/commit/90f980c860c18f99c0f4c3e656a155d34e5299d8.gph	mx1.adamsgaard.dk	70
hAuthor: Anders Damsgaard <anders.damsgaard@geo.au.dk>	URL:mailto:anders.damsgaard@geo.au.dk	mx1.adamsgaard.dk	70
iDate:   Thu,  3 Dec 2015 11:29:55 +0100	Err	mx1.adamsgaard.dk	70
i	Err	mx1.adamsgaard.dk	70
iadd exhumation plot with labels, add grant info	Err	mx1.adamsgaard.dk	70
i	Err	mx1.adamsgaard.dk	70
iDiffstat:	Err	mx1.adamsgaard.dk	70
i  M foot.html                           |       4 +++-	Err	mx1.adamsgaard.dk	70
i  M index.php                           |      34 +++++++++++++++++++++++++++++++	Err	mx1.adamsgaard.dk	70
i  M matlab/generate_plots.m             |      19 ++++++++++++-------	Err	mx1.adamsgaard.dk	70
i	Err	mx1.adamsgaard.dk	70
i3 files changed, 49 insertions(+), 8 deletions(-)	Err	mx1.adamsgaard.dk	70
i---	Err	mx1.adamsgaard.dk	70
1diff --git a/foot.html b/foot.html	/src/file/foot.html.gph	mx1.adamsgaard.dk	70
it@@ -5,7 +5,9 @@	Err	mx1.adamsgaard.dk	70
i                 <div class="col l9 s12">	Err	mx1.adamsgaard.dk	70
i                     <h5 class="white-text">Acknowledgements</h5>	Err	mx1.adamsgaard.dk	70
i                     <p class="grey-text text-lighten-4">	Err	mx1.adamsgaard.dk	70
i-                    This website is supported by grant ##-###-## by XXXXXX.	Err	mx1.adamsgaard.dk	70
i+                    This website is supported by grant VKR023114 by the Villum	Err	mx1.adamsgaard.dk	70
i+                    Foundation and a grant by the Aarhus University Research	Err	mx1.adamsgaard.dk	70
i+                    Foundation.	Err	mx1.adamsgaard.dk	70
i 	Err	mx1.adamsgaard.dk	70
i                     All rights reserved.	Err	mx1.adamsgaard.dk	70
i                     </p>	Err	mx1.adamsgaard.dk	70
1diff --git a/index.php b/index.php	/src/file/index.php.gph	mx1.adamsgaard.dk	70
it@@ -291,6 +291,40 @@ if (isset($_GET['wait_id']) && !empty($_GET['wait_id'])) {	Err	mx1.adamsgaard.dk	70
i             </div>	Err	mx1.adamsgaard.dk	70
i 	Err	mx1.adamsgaard.dk	70
i             <div class="row">	Err	mx1.adamsgaard.dk	70
i+                <!--<div class="col s12 m8 offset-m2">-->	Err	mx1.adamsgaard.dk	70
i+              <div class="col s12">	Err	mx1.adamsgaard.dk	70
i+                <div class="card">	Err	mx1.adamsgaard.dk	70
i+                  <div class="card-image">	Err	mx1.adamsgaard.dk	70
i+                  <img src="output/<?php	Err	mx1.adamsgaard.dk	70
i+                        echo($_GET['results_id']); ?>_Walks-8.png">	Err	mx1.adamsgaard.dk	70
i+                        <!--	Err	mx1.adamsgaard.dk	70
i+                        <span class="card-title blue-text text-darken-2">	Err	mx1.adamsgaard.dk	70
i+                        Erosion history</span>-->	Err	mx1.adamsgaard.dk	70
i+                  </div>	Err	mx1.adamsgaard.dk	70
i+                  <div class="card-content">	Err	mx1.adamsgaard.dk	70
i+                      <h5 class="blue-text">	Err	mx1.adamsgaard.dk	70
i+                          Exhumation history</h5>	Err	mx1.adamsgaard.dk	70
i+                      <p>	Err	mx1.adamsgaard.dk	70
i+                      Mean and 25 and 75 percentiles of sample exhumation	Err	mx1.adamsgaard.dk	70
i+                      history, one figure per MCMC walker.	Err	mx1.adamsgaard.dk	70
i+                      </p>	Err	mx1.adamsgaard.dk	70
i+                  </div>	Err	mx1.adamsgaard.dk	70
i+                  <div class="card-action">	Err	mx1.adamsgaard.dk	70
i+                  <a href="output/<?php	Err	mx1.adamsgaard.dk	70
i+                        echo($_GET['results_id']); ?>_Walks-8.png"	Err	mx1.adamsgaard.dk	70
i+                    target="_blank">Link to PNG</a>	Err	mx1.adamsgaard.dk	70
i+                  <a href="output/<?php	Err	mx1.adamsgaard.dk	70
i+                        echo($_GET['results_id']); ?>_Walks-8.pdf"	Err	mx1.adamsgaard.dk	70
i+                    target="_blank">Link to PDF</a>	Err	mx1.adamsgaard.dk	70
i+                  <a href="output/<?php	Err	mx1.adamsgaard.dk	70
i+                        echo($_GET['results_id']); ?>_Walks-8.fig"	Err	mx1.adamsgaard.dk	70
i+                    target="_blank">Link to FIG</a>	Err	mx1.adamsgaard.dk	70
i+                  </div>	Err	mx1.adamsgaard.dk	70
i+                </div>	Err	mx1.adamsgaard.dk	70
i+              </div>	Err	mx1.adamsgaard.dk	70
i+            </div>	Err	mx1.adamsgaard.dk	70
i+	Err	mx1.adamsgaard.dk	70
i+            <div class="row">	Err	mx1.adamsgaard.dk	70
i               <div class="col s12">	Err	mx1.adamsgaard.dk	70
i                 <div class="card">	Err	mx1.adamsgaard.dk	70
i                   <div class="card-image">	Err	mx1.adamsgaard.dk	70
1diff --git a/matlab/generate_plots.m b/matlab/generate_plots.m	/src/file/matlab/generate_plots.m.gph	mx1.adamsgaard.dk	70
it@@ -524,14 +524,14 @@ linkaxes(axh,'x')	Err	mx1.adamsgaard.dk	70
i 	Err	mx1.adamsgaard.dk	70
i %% Exhumation history from InspectDepthConcTracks_True_plot.m	Err	mx1.adamsgaard.dk	70
i disp('Exhumation history');	Err	mx1.adamsgaard.dk	70
i-%fh = [fh;figure('visible', show_figures)];	Err	mx1.adamsgaard.dk	70
i+fh = [fh;figure('visible', show_figures)];	Err	mx1.adamsgaard.dk	70
i for iwalk = 1:Nwalkers	Err	mx1.adamsgaard.dk	70
i     % iwalk=input(['What iwalk?[1..',num2str(length(Ss)),']']),	Err	mx1.adamsgaard.dk	70
i     	Err	mx1.adamsgaard.dk	70
i     % if all walker results are written to a single figure, it exceeds	Err	mx1.adamsgaard.dk	70
i     % system memory limits	Err	mx1.adamsgaard.dk	70
i-    %subplot(Nwalkers,1,iwalk)	Err	mx1.adamsgaard.dk	70
i-    fh = [fh;figure('visible', show_figures)];	Err	mx1.adamsgaard.dk	70
i+    subplot(Nwalkers,1,iwalk)	Err	mx1.adamsgaard.dk	70
i+    %fh = [fh;figure('visible', show_figures)];	Err	mx1.adamsgaard.dk	70
i     	Err	mx1.adamsgaard.dk	70
i     lump_MetHas = Ss{iwalk}.lump_MetHas;	Err	mx1.adamsgaard.dk	70
i     fixed_stuff = Ss{iwalk}.fs;	Err	mx1.adamsgaard.dk	70
it@@ -591,17 +591,22 @@ for iwalk = 1:Nwalkers	Err	mx1.adamsgaard.dk	70
i     E_25(iwalk) = quants2(1, 2001, iwalk);	Err	mx1.adamsgaard.dk	70
i     E_50(iwalk) = quants2(2, 2001, iwalk);	Err	mx1.adamsgaard.dk	70
i     E_75(iwalk) = quants2(3, 2001, iwalk);	Err	mx1.adamsgaard.dk	70
i+    	Err	mx1.adamsgaard.dk	70
i+    axis([0 1e6 0 25])	Err	mx1.adamsgaard.dk	70
i+    %caxis([0 25])	Err	mx1.adamsgaard.dk	70
i+    set (gca,'xtick',[0:0.1e5:1e6]);	Err	mx1.adamsgaard.dk	70
i+    set (gca,'ytick',[0:3:12]);	Err	mx1.adamsgaard.dk	70
i+    xlabel('Time BP [yr]')	Err	mx1.adamsgaard.dk	70
i+    ylabel('Depth beneath terrain [m]')	Err	mx1.adamsgaard.dk	70
i end	Err	mx1.adamsgaard.dk	70
i colormap(1-copper(15))	Err	mx1.adamsgaard.dk	70
i %subplot(2,2,1);	Err	mx1.adamsgaard.dk	70
i %title(fn,'interpreter','none')	Err	mx1.adamsgaard.dk	70
i %axis([-2e6 0 0 40])	Err	mx1.adamsgaard.dk	70
i-axis([0 1e6 0 25])	Err	mx1.adamsgaard.dk	70
i-caxis([0 25])	Err	mx1.adamsgaard.dk	70
i+	Err	mx1.adamsgaard.dk	70
i %colorbar	Err	mx1.adamsgaard.dk	70
i %set (gca,'xtick',[-2e6:0.2e6:0]);	Err	mx1.adamsgaard.dk	70
i-set (gca,'xtick',[0:0.1e5:1e6]);	Err	mx1.adamsgaard.dk	70
i-set (gca,'ytick',[0:3:12]);	Err	mx1.adamsgaard.dk	70
i+	Err	mx1.adamsgaard.dk	70
i %XTicksAt = ([-2e6:0.2e6:0]);	Err	mx1.adamsgaard.dk	70
i 	Err	mx1.adamsgaard.dk	70
i 	Err	mx1.adamsgaard.dk	70
.