itfix internal uncertainty values - cosmo - front and backend for Markov-Chain Monte Carlo inversion of cosmogenic nuclide concentrations	Err	mx1.adamsgaard.dk	70
hgit clone git://src.adamsgaard.dk/cosmo	URL:git://src.adamsgaard.dk/cosmo	mx1.adamsgaard.dk	70
1Log	/src/log.gph	mx1.adamsgaard.dk	70
1Files	/src/files.gph	mx1.adamsgaard.dk	70
1Refs	/src/refs.gph	mx1.adamsgaard.dk	70
1README	/src/file/README.md.gph	mx1.adamsgaard.dk	70
1LICENSE	/src/file/LICENSE.gph	mx1.adamsgaard.dk	70
i---	Err	mx1.adamsgaard.dk	70
1commit 1ca0a617715320666a6a2eaf9ed90a7156057982	/src/commit/1ca0a617715320666a6a2eaf9ed90a7156057982.gph	mx1.adamsgaard.dk	70
1parent 3df2de3130aac5b7b292e874004f38e845584362	/src/commit/3df2de3130aac5b7b292e874004f38e845584362.gph	mx1.adamsgaard.dk	70
hAuthor: Anders Damsgaard <anders.damsgaard@geo.au.dk>	URL:mailto:anders.damsgaard@geo.au.dk	mx1.adamsgaard.dk	70
iDate:   Thu,  3 Dec 2015 17:15:56 +0100	Err	mx1.adamsgaard.dk	70
i	Err	mx1.adamsgaard.dk	70
ifix internal uncertainty values	Err	mx1.adamsgaard.dk	70
i	Err	mx1.adamsgaard.dk	70
iDiffstat:	Err	mx1.adamsgaard.dk	70
i  M matlab/generate_plots.m             |       8 ++++----	Err	mx1.adamsgaard.dk	70
i  M matlab/import_php_file.m            |       5 +++++	Err	mx1.adamsgaard.dk	70
i  M matlab/m_pakke2014maj11/gCosmoLong… |      96 +++++++++++++++----------------	Err	mx1.adamsgaard.dk	70
i	Err	mx1.adamsgaard.dk	70
i3 files changed, 55 insertions(+), 54 deletions(-)	Err	mx1.adamsgaard.dk	70
i---	Err	mx1.adamsgaard.dk	70
1diff --git a/matlab/generate_plots.m b/matlab/generate_plots.m	/src/file/matlab/generate_plots.m.gph	mx1.adamsgaard.dk	70
it@@ -887,19 +887,19 @@ html = ['\n' ...	Err	mx1.adamsgaard.dk	70
i     '        </tr>\n'...	Err	mx1.adamsgaard.dk	70
i     '        <tr>\n'...	Err	mx1.adamsgaard.dk	70
i     '            <td><sup>10</sup>Be conc. uncertainty</td>\n'...	Err	mx1.adamsgaard.dk	70
i-    '            <td>' num2str(be_uncer) ' %%</td>\n'...	Err	mx1.adamsgaard.dk	70
i+    '            <td>' num2str(be_uncer*100.) ' %%</td>\n'...	Err	mx1.adamsgaard.dk	70
i     '        </tr>\n'...	Err	mx1.adamsgaard.dk	70
i     '        <tr>\n'...	Err	mx1.adamsgaard.dk	70
i     '            <td><sup>26</sup>Al conc. uncertainty</td>\n'...	Err	mx1.adamsgaard.dk	70
i-    '            <td>' num2str(al_uncer) ' %%</td>\n'...	Err	mx1.adamsgaard.dk	70
i+    '            <td>' num2str(al_uncer*100.) ' %%</td>\n'...	Err	mx1.adamsgaard.dk	70
i     '        </tr>\n'...	Err	mx1.adamsgaard.dk	70
i     '        <tr>\n'...	Err	mx1.adamsgaard.dk	70
i     '            <td><sup>14</sup>C conc. uncertainty</td>\n'...	Err	mx1.adamsgaard.dk	70
i-    '            <td>' num2str(c_uncer) ' %%</td>\n'...	Err	mx1.adamsgaard.dk	70
i+    '            <td>' num2str(c_uncer*100.) ' %%</td>\n'...	Err	mx1.adamsgaard.dk	70
i     '        </tr>\n'...	Err	mx1.adamsgaard.dk	70
i     '        <tr>\n'...	Err	mx1.adamsgaard.dk	70
i     '            <td><sup>21</sup>Ne conc. uncertainty</td>\n'...	Err	mx1.adamsgaard.dk	70
i-    '            <td>' num2str(ne_uncer) ' %%</td>\n'...	Err	mx1.adamsgaard.dk	70
i+    '            <td>' num2str(ne_uncer*100.) ' %%</td>\n'...	Err	mx1.adamsgaard.dk	70
i     '        </tr>\n'...	Err	mx1.adamsgaard.dk	70
i     '        <tr>\n'...	Err	mx1.adamsgaard.dk	70
i     '            <td>Observation depth</td>\n'...	Err	mx1.adamsgaard.dk	70
1diff --git a/matlab/import_php_file.m b/matlab/import_php_file.m	/src/file/matlab/import_php_file.m.gph	mx1.adamsgaard.dk	70
it@@ -174,6 +174,11 @@ al_prod_muon = al_prod_muon*1000.; % atoms/g/yr to atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i c_prod_muon  =  c_prod_muon*1000.; % atoms/g/yr to atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i ne_prod_muon = ne_prod_muon*1000.; % atoms/g/yr to atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i 	Err	mx1.adamsgaard.dk	70
i+be_uncer = be_uncer/100.; % percent to fraction	Err	mx1.adamsgaard.dk	70
i+al_uncer = al_uncer/100.; % percent to fraction	Err	mx1.adamsgaard.dk	70
i+c_uncer  =  c_uncer/100.; % percent to fraction	Err	mx1.adamsgaard.dk	70
i+ne_uncer = ne_uncer/100.; % percent to fraction	Err	mx1.adamsgaard.dk	70
i+	Err	mx1.adamsgaard.dk	70
i epsilon_gla_min = epsilon_gla_min/1.0e6; % m/Myr to m/yr	Err	mx1.adamsgaard.dk	70
i epsilon_gla_max = epsilon_gla_max/1.0e6; % m/Myr to m/yr	Err	mx1.adamsgaard.dk	70
i epsilon_int_min = epsilon_int_min/1.0e6; % m/Myr to m/yr	Err	mx1.adamsgaard.dk	70
1diff --git a/matlab/m_pakke2014maj11/gCosmoLongsteps.m b/matlab/m_pakke2014maj11/gCosmoLongsteps.m	/src/file/matlab/m_pakke2014maj11/gCosmoLongsteps.m.gph	mx1.adamsgaard.dk	70
it@@ -108,19 +108,18 @@ fm_rat26 = (0.6/(0.7+0.6));	Err	mx1.adamsgaard.dk	70
i %10Be production	Err	mx1.adamsgaard.dk	70
i % Input fra Kasper	Err	mx1.adamsgaard.dk	70
i %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% - Start	Err	mx1.adamsgaard.dk	70
i-%P10_top_spal=5.33e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i-%P10_top_nm=0.106e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i-%P10_top_fm=0.093e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i+P10_top_spal=5.33e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i+P10_top_nm=0.106e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i+P10_top_fm=0.093e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i 	Err	mx1.adamsgaard.dk	70
i-if ~isempty(fixed_stuff.be_prod_spall) && ...	Err	mx1.adamsgaard.dk	70
i-        ~isempty(fixed_stuff.be_prod_muons)	Err	mx1.adamsgaard.dk	70
i-    P10_top_spal = fixed_stuff.be_prod_spall;	Err	mx1.adamsgaard.dk	70
i-    P10_top_nm = nm_rat10*fixed_stuff.be_prod_muons;	Err	mx1.adamsgaard.dk	70
i-    P10_top_fm = fm_rat10*fixed_stuff.be_prod_muons;	Err	mx1.adamsgaard.dk	70
i-else	Err	mx1.adamsgaard.dk	70
i-    P10_top_spal=5.33e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i-    P10_top_nm=0.106e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i-    P10_top_fm=0.093e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i+if exist('fixed_stuff.be_prod_spall', 'var') == 1 && ...	Err	mx1.adamsgaard.dk	70
i+        exist('fixed_stuff.be_prod_muons', 'var') == 1	Err	mx1.adamsgaard.dk	70
i+    if ~isempty(fixed_stuff.be_prod_spall) && ...	Err	mx1.adamsgaard.dk	70
i+            ~isempty(fixed_stuff.be_prod_muons)	Err	mx1.adamsgaard.dk	70
i+        P10_top_spal = fixed_stuff.be_prod_spall;	Err	mx1.adamsgaard.dk	70
i+        P10_top_nm = nm_rat10*fixed_stuff.be_prod_muons;	Err	mx1.adamsgaard.dk	70
i+        P10_top_fm = fm_rat10*fixed_stuff.be_prod_muons;	Err	mx1.adamsgaard.dk	70
i+    end	Err	mx1.adamsgaard.dk	70
i end	Err	mx1.adamsgaard.dk	70
i 	Err	mx1.adamsgaard.dk	70
i %Reference values for Kasper	Err	mx1.adamsgaard.dk	70
it@@ -154,19 +153,18 @@ end	Err	mx1.adamsgaard.dk	70
i 	Err	mx1.adamsgaard.dk	70
i % Input fra Kasper	Err	mx1.adamsgaard.dk	70
i %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% - Start	Err	mx1.adamsgaard.dk	70
i-%P26_top_spal=31.1e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i-%P26_top_nm=0.7e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i-%P26_top_fm=0.6e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i+P26_top_spal=31.1e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i+P26_top_nm=0.7e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i+P26_top_fm=0.6e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i 	Err	mx1.adamsgaard.dk	70
i-if ~isempty(fixed_stuff.al_prod_spall) && ...	Err	mx1.adamsgaard.dk	70
i-        ~isempty(fixed_stuff.al_prod_muons)	Err	mx1.adamsgaard.dk	70
i-    P26_top_spal = fixed_stuff.al_prod_spall;	Err	mx1.adamsgaard.dk	70
i-    P26_top_nm = nm_rat26*fixed_stuff.al_prod_muons;	Err	mx1.adamsgaard.dk	70
i-    P26_top_fm = fm_rat26*fixed_stuff.al_prod_muons;	Err	mx1.adamsgaard.dk	70
i-else	Err	mx1.adamsgaard.dk	70
i-    P26_top_spal=31.1e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i-    P26_top_nm=0.7e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i-    P26_top_fm=0.6e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i+if exist('fixed_stuff.al_prod_spall', 'var') == 1 && ...	Err	mx1.adamsgaard.dk	70
i+        exist('fixed_stuff.al_prod_muons', 'var') == 1	Err	mx1.adamsgaard.dk	70
i+    if ~isempty(fixed_stuff.al_prod_spall) && ...	Err	mx1.adamsgaard.dk	70
i+            ~isempty(fixed_stuff.al_prod_muons)	Err	mx1.adamsgaard.dk	70
i+        P26_top_spal = fixed_stuff.al_prod_spall;	Err	mx1.adamsgaard.dk	70
i+        P26_top_nm = nm_rat26*fixed_stuff.al_prod_muons;	Err	mx1.adamsgaard.dk	70
i+        P26_top_fm = fm_rat26*fixed_stuff.al_prod_muons;	Err	mx1.adamsgaard.dk	70
i+    end	Err	mx1.adamsgaard.dk	70
i end	Err	mx1.adamsgaard.dk	70
i 	Err	mx1.adamsgaard.dk	70
i %Reference values for Kasper	Err	mx1.adamsgaard.dk	70
it@@ -190,19 +188,18 @@ end	Err	mx1.adamsgaard.dk	70
i % P26_total = (P26_spal + P26_nm + P26_fm);	Err	mx1.adamsgaard.dk	70
i 	Err	mx1.adamsgaard.dk	70
i %21Ne production	Err	mx1.adamsgaard.dk	70
i-%P21_top_spal=20.8e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i-%P21_top_nm=0.4e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i-%P21_top_fm=0.35e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i-	Err	mx1.adamsgaard.dk	70
i-if ~isempty(fixed_stuff.ne_prod_spall) && ...	Err	mx1.adamsgaard.dk	70
i-        ~isempty(fixed_stuff.ne_prod_muons)	Err	mx1.adamsgaard.dk	70
i-    P21_top_spal = fixed_stuff.ne_prod_spall;	Err	mx1.adamsgaard.dk	70
i-    P21_top_nm = nm_rat10*fixed_stuff.ne_prod_muons;	Err	mx1.adamsgaard.dk	70
i-    P21_top_fm = fm_rat10*fixed_stuff.ne_prod_muons;	Err	mx1.adamsgaard.dk	70
i-else	Err	mx1.adamsgaard.dk	70
i-    P21_top_spal=20.8e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i-    P21_top_nm=0.4e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i-    P21_top_fm=0.35e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i+P21_top_spal=20.8e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i+P21_top_nm=0.4e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i+P21_top_fm=0.35e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i+	Err	mx1.adamsgaard.dk	70
i+if exist('fixed_stuff.ne_prod_spall', 'var') == 1 && ...	Err	mx1.adamsgaard.dk	70
i+        exist('fixed_stuff.ne_prod_muons', 'var') == 1	Err	mx1.adamsgaard.dk	70
i+    if ~isempty(fixed_stuff.ne_prod_spall) && ...	Err	mx1.adamsgaard.dk	70
i+            ~isempty(fixed_stuff.ne_prod_muons)	Err	mx1.adamsgaard.dk	70
i+        P21_top_spal = fixed_stuff.ne_prod_spall;	Err	mx1.adamsgaard.dk	70
i+        P21_top_nm = nm_rat10*fixed_stuff.ne_prod_muons;	Err	mx1.adamsgaard.dk	70
i+        P21_top_fm = fm_rat10*fixed_stuff.ne_prod_muons;	Err	mx1.adamsgaard.dk	70
i+    end	Err	mx1.adamsgaard.dk	70
i end	Err	mx1.adamsgaard.dk	70
i 	Err	mx1.adamsgaard.dk	70
i % P21_spal = P21_top_spal*exp(-z*rho/Tau_spal);	Err	mx1.adamsgaard.dk	70
it@@ -212,19 +209,18 @@ end	Err	mx1.adamsgaard.dk	70
i % P21_total = (P21_spal + P21_nm + P21_fm);	Err	mx1.adamsgaard.dk	70
i 	Err	mx1.adamsgaard.dk	70
i %14C production	Err	mx1.adamsgaard.dk	70
i-%P14_top_spal=14.6e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i-%P14_top_nm=2.3e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i-%P14_top_fm=2.1e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i-	Err	mx1.adamsgaard.dk	70
i-if ~isempty(fixed_stuff.c_prod_spall) && ...	Err	mx1.adamsgaard.dk	70
i-        ~isempty(fixed_stuff.c_prod_muons)	Err	mx1.adamsgaard.dk	70
i-    P14_top_spal = fixed_stuff.c_prod_spall;	Err	mx1.adamsgaard.dk	70
i-    P14_top_nm = nm_rat10*fixed_stuff.c_prod_muons;	Err	mx1.adamsgaard.dk	70
i-    P14_top_fm = fm_rat10*fixed_stuff.c_prod_muons;	Err	mx1.adamsgaard.dk	70
i-else	Err	mx1.adamsgaard.dk	70
i-    P14_top_spal=14.6e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i-    P14_top_nm=2.3e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i-    P14_top_fm=2.1e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i+P14_top_spal=14.6e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i+P14_top_nm=2.3e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i+P14_top_fm=2.1e3; %atoms/kg/yr	Err	mx1.adamsgaard.dk	70
i+	Err	mx1.adamsgaard.dk	70
i+if exist('fixed_stuff.c_prod_spall', 'var') == 1 && ...	Err	mx1.adamsgaard.dk	70
i+        exist('fixed_stuff.c_prod_muons', 'var') == 1	Err	mx1.adamsgaard.dk	70
i+    if ~isempty(fixed_stuff.c_prod_spall) && ...	Err	mx1.adamsgaard.dk	70
i+            ~isempty(fixed_stuff.c_prod_muons)	Err	mx1.adamsgaard.dk	70
i+        P14_top_spal = fixed_stuff.c_prod_spall;	Err	mx1.adamsgaard.dk	70
i+        P14_top_nm = nm_rat10*fixed_stuff.c_prod_muons;	Err	mx1.adamsgaard.dk	70
i+        P14_top_fm = fm_rat10*fixed_stuff.c_prod_muons;	Err	mx1.adamsgaard.dk	70
i+    end	Err	mx1.adamsgaard.dk	70
i end	Err	mx1.adamsgaard.dk	70
i     	Err	mx1.adamsgaard.dk	70
i % P14_spal = P14_top_spal*exp(-z*rho/Tau_spal);	Err	mx1.adamsgaard.dk	70
.