[HN Gopher] Giant, fungus-like organism may be a completely unkn...
       ___________________________________________________________________
        
       Giant, fungus-like organism may be a completely unknown branch of
       life
        
       Author : wglb
       Score  : 278 points
       Date   : 2025-03-27 23:15 UTC (23 hours ago)
        
 (HTM) web link (www.livescience.com)
 (TXT) w3m dump (www.livescience.com)
        
       | ahazred8ta wrote:
       | Prototaxites, an ancient treetrunk-mushroom-like organism that
       | preceded land plants about 400M yr ago. Its fossils contained
       | plantlike lignin instead of funguslike chitin or chitosan.
       | 
       | https://www.biorxiv.org/content/10.1101/2025.03.14.643340v1
       | 
       | https://en.wikipedia.org/wiki/Prototaxites
        
         | Liquix wrote:
         | hilarious:
         | 
         |  _John William Dawson, a Canadian scientist, studied
         | Prototaxites fossils, which he described as partially rotten
         | giant conifers, containing the remains of the fungi which had
         | been decomposing them. This concept was not disputed until
         | 1872, when the rival scientist William Carruthers poured
         | ridicule on the idea. ... Dawson fought adamantly to defend his
         | original interpretation until studies of the microstructure
         | made it clear that his position was untenable, whence he
         | promptly attempted to rename the genus himself, calling it
         | Nematophyton ( "stringy plant"), and denying with great
         | vehemence that he had ever considered it to be a tree._
        
       | qbxk wrote:
       | > Prototaxites did not contain chitin, a major building block of
       | fungal cell walls and a hallmark of the fungal kingdom. The
       | Prototaxites fossils instead appeared to contain chemicals
       | similar to lignin, which is found in the wood and bark of plants.
       | ... best considered a member of a previously undescribed,
       | entirely extinct group of eukaryotes
       | 
       | So these are the ancestors of Groot? or Ents? and all manner of
       | "animated trees"?
        
         | sshine wrote:
         | Protogroots
        
           | a3w wrote:
           | Protomolecule.
           | 
           | Allows for Protozombies [as seen on TV]?
        
             | TeMPOraL wrote:
             | It's fine as long as it also allows for warp gates.
        
         | guerrilla wrote:
         | I am Groot. I _am_ Groot? I am _Groot_.
        
       | N_A_T_E wrote:
       | Pretty sure this was a major plot point of the latest resident
       | evil game.
        
       | andrewstuart wrote:
       | There's one of them at the back of my fridge.
        
       | mfdoom13 wrote:
       | Common Side Effects, here we come.
        
       | chasil wrote:
       | I'm still trying to wrap my head around nitroplasts, another
       | newfound plastid.
        
       | deadbabe wrote:
       | Is there a point in Earth's history where if you were to visit
       | you'd find it was just a fungus planet, with no other form of
       | life? Could there have been fungal type creatures that lived,
       | died, and left no trace?
        
         | doctoboggan wrote:
         | No, non-fungi single celled organisms have existed at all times
         | that fungi have existed on earth.
        
         | adrian_b wrote:
         | Blue-green algae have colonized fresh water and all moist
         | spaces on the continents billions of years before the
         | appearance of fungi and of the terrestrial green plants. They
         | were accompanied by the ancestors of several groups of
         | heterotrophic bacteria, e.g. Firmicutes and Actinobacteria (the
         | Gram-positive bacteria), which had developed abilities like
         | making spores that could survive dryness and be spread by wind,
         | like also fungi would do later.
         | 
         | In fact, it is likely that blue-green algae have appeared for
         | the first time on continents, either in fresh water or moist
         | rocks, and only much later they have spread into marine
         | environments, which had been previously dominated by anoxygenic
         | phototrophic bacteria, which were oxidizing sulfur, iron or
         | manganese, not water. The transition to oxidizing water is
         | likely to have been necessary for the spreading of the blue-
         | green algae on continents, where the fresh water had only a
         | very small content of substances that could be oxidized unlike
         | seawater, which at that time was rich in hydrogen sulfide and
         | in Fe(II) and Mn(II) ions. When the blue-green algae have
         | expanded back into the oceans, that must have been after the
         | oxygenation of the atmosphere has modified the composition of
         | the oceans, by precipitating most of the iron and manganese and
         | oxidizing sulfide to sulfate, which would have deprived the
         | anoxygenic phototrophic bacteria of their food.
         | 
         | Then, in the oceans, at some point in time a blue-green alga
         | has become symbiotic with the ancestor of red algae and green
         | algae, which have then dominated for many hundred million years
         | the oceans, before the much later appearance of other
         | phototrophic groups, like diatoms and brown algae.
         | Multicellular red algae and green algae already existed in the
         | oceans around one billion years ago, when no other
         | multicellular eukaryotes existed.
         | 
         | When the fungi have appeared through a transition to a
         | terrestrial lifestyle, that could happen only if on land they
         | could find great amounts of dead living matter, which had been
         | produced by blue-green algae. It is not known for sure whether
         | fungi have appeared a long time before the first terrestrial
         | green plants or about the same time, but it seems that already
         | for the most ancient terrestrial green plants, symbioses with
         | fungi that enhanced the absorptive capabilities of their roots
         | have been important. For aquatic plants, roots had only a
         | fixation function, not the function of absorbing nutrients, so
         | perhaps symbiosis with some already existing terrestrial fungi
         | might have been necessary, not optional, for the first
         | terrestrial green plants, until better absorbing roots have
         | evolved.
         | 
         | So for a long time in the history of the planet, the drier
         | parts of the land would be barren, but wherever there was
         | moisture you would find mats or crusts of blue-green algae,
         | with associated heterotrophic bacteria and viruses.
         | 
         | Then, probably not earlier than the Cambrian, there would be
         | also fungi, and even later the first moss-like terrestrial
         | green plants would appear.
        
       | calibas wrote:
       | > with eukarya containing all multicellular organisms within the
       | four kingdoms of fungi, animals, plants and protists.
       | 
       | This bugs me so much. The four-kingdom system should have died
       | out decades ago, it's absurdly wrong. For one thing, fungi and
       | animals should be together (opisthokonts) if you're dividing
       | eukaryotes into the major groups. If you consider genetics,
       | there's no such thing as "protists", they're just a whole bunch
       | of small things that were grouped together because we didn't know
       | otherwise.
       | 
       | It's more like, Archaeplastida, Excavata, SAR supergroup,
       | Amoebozoa, and Opisthokonta at the moment. The exact list is up
       | for debate, and currently undergoing change. There's plenty of
       | weird things like Hemimastigophora and we're not really sure
       | where they fit yet.
        
         | mmooss wrote:
         | > The exact list is up for debate, and currently undergoing
         | change.
         | 
         | My strong impression is that even the roots of the tree are
         | debated, with competing models that often change.
         | 
         | > The four-kingdom system should have died out decades ago
         | 
         | First, hopefully not! :) Second, I think it's used because it's
         | the last stable model. Third, it's a model that the public can
         | understand - theres no point in even trying to use
         | "Archaeplastida, Excavata, SAR supergroup, Amoebozoa, and
         | Opisthokonta" unless you are an expert in phylogenics or
         | evolution. Who can understand and remember that?
        
           | calibas wrote:
           | Children can memorize all 50 US state capitals, they can
           | memorize a handful of scientific names. If we really wanted
           | to, we could teach them a much more accurate view of the tree
           | of life. Also, I don't think the four-kingdom system has been
           | taught in schools for a while? I went to high school in the
           | late 90s and it wasn't taught then.
           | 
           | It's strange to see people promoting it online in 2025. If
           | adults want to remain ignorant, so be it, but at least teach
           | children the truth. Let them know that life is incredibly
           | complicated, it's a mystery we're still solving, and they
           | could be the ones to help figure it out. Don't overly
           | simplify things for small minds, it creates a false picture
           | and it kills the imagination.
        
             | neom wrote:
             | May as well add this to the above:
             | https://en.wikipedia.org/wiki/Songline (large amounts of
             | knowledge can be transferred just fine)
        
             | bbor wrote:
             | I'm a huge cladistics fan, but insisting that "animal"
             | isn't a useful term is pretty out there, IMHO. Certainly we
             | can (and do!) teach cladistics in high school biology, but
             | does your ideal world have baby books titled with one of
             | the mentioned names...?
             | 
             | More personally speaking: what am I missing out by using
             | the four kingdoms? Like, how could that possibly ever
             | backfire in a way that slightly impacts my life negatively,
             | or impedes the scientists studying genetic lineages?
             | There's basically infinite science to "remain ignorant" of,
             | I don't see any justification for an elitist attitude on
             | this nuance in particular.
        
               | sashank_1509 wrote:
               | Why not go the other way, what are you missing if you
               | don't learnt four kingdoms. Why should that be taught at
               | all.
               | 
               | One obvious reason it should not be taught, if it is
               | wrong then it kills curiosity and imagination by giving
               | us a neat story we think is true. In a way it has the
               | same negative effect religion can have but to a smaller
               | degree. Why does the earth exist, because god made it
               | kills all spirit of enquiry. This is the same problem I
               | have with the big bang. This is another theory that kills
               | inquiry. Similar example:
        
               | 9dev wrote:
               | Well in very practical terms, it gives you a way to name
               | things you see in the forest, to figure out what is
               | edible, and to understand what has a sentience of its
               | own, similar to yours.
               | 
               | I don't mean to be snarky, but it seems like you're very
               | removed from the reality of normal people and parents out
               | there.
        
               | johnisgood wrote:
               | There is much more to figure out what is edible and what
               | is not. Considering shrooms alone, it is much more
               | "complicated", so much that there are specialists for
               | that, even, but I agree, could be an useful skill, but
               | not for people who do not even leave the city, I think.
               | 
               | However, they should know the basics such as "not eating
               | potatoes (or its parts) that are green", and so forth,
               | since that is something you run into even if you never
               | leave the city. Food spoilage in general would be useful
               | to teach, but that is the job of the parents, I would
               | say. That said, my teachers in elementary school always
               | used to tell me that they are our second parents. I can
               | see where they were coming from.
        
               | 9dev wrote:
               | I didn't say there wasn't. My point is that explaining to
               | kids why they can pick a strawberry from the forest
               | floor, but leave the fly agaric where it is, despite
               | being the same color, is hard enough without going into
               | the phylogenetic peculiarities.
               | 
               | Starting with animals (things that can think like you),
               | plants (things that eat light), fungi (underground webs
               | that bloom above ground), and bacteria (very small things
               | that are sort-of alive, and can both be good for you or
               | make you sick), makes things so much easier and is
               | probably all you need to know for a while.
        
               | johnisgood wrote:
               | I agree.
        
               | TeMPOraL wrote:
               | The reality of normal people and parents is that a
               | different basic classification is warranted:
               | 
               | - Humans are what they are;
               | 
               | - Animals are what they are;
               | 
               | - Plants and fungi of the kind you can gather in the
               | forest, and anything else that is macro-scale but doesn't
               | run or swim around, are just "plants";
               | 
               | - Bacteria, viruses, fungi of the other kind, archaea and
               | even single-cellular organisms that could have negative
               | impact on you, are all just "bacteria" or
               | "microorganisms" or "pathogens";
               | 
               | - "Plants" breaks down into "trees", "grasses", "bushes",
               | "shrooms", "flowers", and that's about it;
               | 
               | - "Animals" breaks down into "fish", "reptiles", "birds",
               | "mammals";
               | 
               | That covers about all the biology regular people see, to
               | the extent they care about.
               | 
               | Now, if you're teaching people the biological
               | categorization, any one you will pick will be different
               | from the daily experience of an ordinary person. Like,
               | for practical reasons, whales and dolphins are fish (they
               | look like every other fish and swim in water, and you
               | hunt them with ships), and tomato is a vegetable (you
               | don't put it into a fruit salad), and all that looks like
               | grass is grass (despite genetics telling that some
               | grasses are really just very tiny trees, or some trees
               | are genetically just really big grass, etc.).
               | 
               | Point being, if you're going to teach them a biological
               | categorization, that's already distinct from "normie
               | everyday life" categorization, _so you may just as well
               | pick one that 's current and useful in biology_.
               | 
               | (And once again, this is another case of a non-issue that
               | turns into issue only because people are unable to
               | comprehend and teach the distinction between "is" and
               | "can be thought of as"; the fact that categories are
               | invented by people, are not facts of nature; that their
               | only job is to be useful, and you can have many
               | classification systems for the same thing, useful in
               | different contexts.)
        
               | quesera wrote:
               | > _That covers about all the biology regular people see,
               | to the extent they care about._
               | 
               | Insects and spiders are feeling left out.
               | 
               | That insects and mammals are both Animalia can be
               | nonintuitive for preschoolers.
        
               | calibas wrote:
               | I'm not arguing that animal isn't a useful term, but if
               | you're dividing eukaryotes into the major groups, it's
               | not one of them.
               | 
               | > More personally speaking: what am I missing out by
               | using the four kingdoms? Like, how could that possibly
               | ever backfire in a way that slightly impacts my life
               | negatively, or impedes the scientists studying genetic
               | lineages?
               | 
               | Sure, where does kelp fit in? How about slime molds?
               | 
               | Also, I'm not suggesting we teach children all the nuance
               | of phylogeny. I'm suggesting we don't teach a version
               | that we've proven to be objectively wrong.
               | 
               | Eventually, the four-kingdoms system will go away, and it
               | will sit next to the "animal, vegetable, mineral" system
               | in the annals of scientific history.
        
               | bbor wrote:
               | Interesting, thanks for elaborating! Still not sure I
               | understand sadly, but maybe it's just different
               | worldviews on how to play language games. Like, you say
               | we don't need to teach nuance, and that animal is a
               | useful term -- but then what does it denote, if not a
               | group of creatures?
               | 
               | To me, this discussion should center around utility --
               | "objectively wrong" is assumed to apply to basically
               | everything we ever say on some level (what are the
               | chances we happen to live at the End of Science?) so I
               | hesitate to adopt such a binary framework. In this light,
               | taking a stand against "animal, plant, fungus"--which
               | sums up an overwhelming majority of how laypeople
               | interact with the world--seems of dubious value.
               | 
               | Re:examples, kelp are plants and slime molds are molds,
               | and therefor fungi. Boom. Does that capture 100% of their
               | characteristics on a genetic level? Presumably not (and
               | TIL kelp are technically like flexible coral colonies,
               | not vascular plants)! Is it more useful for 99.9% of
               | usage than "they're their own things, somewhat unlike
               | anything else"? Definitely, yes.
               | 
               | P.s. animal vegetable mineral also seems to have held up
               | okay...? It's a culinary thing AFAIK, not an exhaustive
               | list of all objects.
        
             | alexey-salmin wrote:
             | I strongly disagree. It's necessary to teach oversimplified
             | things to small minds, even oversimplified to the extent of
             | being incorrect.
             | 
             | It's unlikely you understand relativistic mechanics unless
             | you learn and practice Newtonian for a few years, then many
             | people stop there and never go for relativism.
             | 
             | It's unlikely you understand Peano axioms without first
             | spending years just working with numbers, completely
             | disregarding the formal foundations. Then many people stop
             | there and never study the formal math.
             | 
             | It's unlikely you understand electron configurations and
             | orbitals without first imagining electrons orbiting the
             | nucleus like earth is orbiting the sun. And even that part
             | you won't understand until you master the false concepts of
             | "sunrise" and "sunset".
             | 
             | You can't climb the ladder without stepping on the first
             | step. I've been studying for many years, observing people
             | around me, I also did a fair share of teaching myself. The
             | purist approach that avoids oversimplifications inevitably
             | leads to disaster. There are maybe 1-2 kids in the class
             | who can "jump the ladder", the rest are left on the ground
             | helpless and confused.
             | 
             | Another curious observation: when I found myself in that
             | role of a kid jumping the ladder in a purist class, I did
             | that by secretly building a false ladder of my own. When
             | professor said "Banach space" I would imagine Euclidean or
             | Hilbert spaces and would get correct intuition half the
             | time. The other half I would remember and use it to
             | understand the difference. Most of others suffered dearly,
             | unable to grasp anything at all, seeing the glass bead game
             | instead of vectors and functions. And we were 20 years old
             | back then, not even that small.
        
               | blueflow wrote:
               | It wouldn't be so nice if it was oversimplified and
               | incorrect to the extent that the child realizes it
               | doesn't add up.
        
               | kulahan wrote:
               | Thankfully at very young ages where this is required,
               | that level of critical thinking is very far off
        
               | kruffalon wrote:
               | From my limited experience (being a child and raising one
               | child) I would say that the problem is more that we (as
               | adults) pretend that the simplified thing is the whole
               | picture.
               | 
               | Every time someone told me: "this is a simplified version
               | to give you a basic understanding and later you will be
               | able to learn more accurate versions" that was
               | tremendously helpful and sometimes it sparked my
               | curiosity and motivated me to look stuff up myself.
               | 
               | I mean we should get ahead of the realisation that it
               | doesn't add up.
        
               | alexey-salmin wrote:
               | I suspect that the best approach would be not to "get
               | ahead", but rather see this realisation develop naturally
               | and help it along the way. It's hard to get critical
               | thinking if everything is already criticized before you
               | even come.
               | 
               | This can work with your kids though but I don't know if
               | it can be effectively scaled to a school class. Maybe on
               | a few dedicated play/discovery sessions, not on a regular
               | basis.
        
               | jon_richards wrote:
               | When I moved to the US in 3rd grade, I was marked wrong
               | for putting negative numbers as answers on a math test.
               | The correct answer was "You can't subtract a larger
               | number from a smaller number".
        
               | macintux wrote:
               | I got into an argument with my science teacher in 4th or
               | 5th grade about whether rivers could flow north, because
               | on a globe, north is up.
        
               | mrWiz wrote:
               | I had a similar experience, but was fortunate that the
               | teacher took me aside and explained that I was right but
               | they were teaching a simplified version. In hindsight
               | that was really a helpful approach.
        
               | __MatrixMan__ wrote:
               | Doing this would create a nice opportunity to teach the
               | right and wrong ways to move the needle in scientific
               | discourse (e.g. don't start by holding a press conference
               | about cold fusion).
               | 
               | Graduation could mean an overthrowing of the known-wrong
               | models. Congratulations, here are the next known-wrong
               | models. Now prove _these_ wrong.
        
               | card_zero wrote:
               | I'm torn on this one, because there's no way I can accept
               | "lies-to-children are for their own good", but on the
               | other hand I'd hate to be overburdened with information
               | about Peanut maximums or the Ophthalmic supergroup when
               | all I wanted to know was how to do division or what kind
               | of thing a mushroom is.
        
               | TeMPOraL wrote:
               | It's not hard. "It's sort of like that, but the details
               | are complicated and you'll learn them later if you want"
               | is a perfectly fine answer.
               | 
               | A big difference between a lie and a simplification is
               | whether the other party _knows_ it 's a simplification.
               | Communicating that is independent of specific
               | simplification you use, and it's sometimes as easy as
               | saying "is mostly like" / "sorta" instead of "is".
        
               | mlhpdx wrote:
               | I was learned enough in school to know when teachers were
               | "teaching" something oversimplified. They uniformly
               | acknowledged that when asked, until one didn't. That one
               | didn't care about the nuance and insisted I give the
               | "expected" answer when asked and ruined my attitude in
               | school for years (not the only event, but it didn't
               | help). Obviously I've never forgotten her.
               | 
               | One thing I adore about this community is the broad
               | acceptance of "I don't know" and "it depends" as the
               | starting point for answers.
        
               | yencabulator wrote:
               | To bring that back into the tech/business world:
               | 
               | My personal rule for being an expert/consultant is to be
               | very willing to say "I don't know, but I can find that
               | out for you", and define _that_ as my real expertise:
               | know how to find out things.
               | 
               | Technology stacks, programming languages, all of those
               | things come and go. The skill to pick up whatever is
               | needed is long-term better.
        
               | alexey-salmin wrote:
               | Once you accept that a model of reality is always
               | somewhat incorrect you kind of stop seeing this as
               | "lies". Reality is infinitely complex, a model however is
               | finite and therefore understandable.
               | 
               | We value models for their simplicity, for their ability
               | to disregard secondary and tertiary details to allow
               | comprehension and prediction of primary effects.
               | 
               | Then the only question is: which level of the
               | simplicity/correctness trade-off is appropriate in given
               | circumstances? When teaching kids or even a non-
               | professional adults, the appropriate level is often very
               | heavy on the "simplicity" side. Adding more complexity
               | results in less overall understanding, so a net-negative
               | effect in the end.
        
               | Tostino wrote:
               | I think the problem comes in when you have adults
               | teaching kids a simplified model who don't actually
               | understand that is what they are doing.
               | 
               | It is not always conveyed well that they are learning a
               | simplified model, or using an analogy. That's when kids
               | feel lied to.
        
               | MyOutfitIsVague wrote:
               | There are very many pithy sayings to this effect, most
               | famously "All models are wrong, but some are useful"
               | (perhaps by George Box, but I can't find this exact
               | phrase attributed to him)
               | 
               | Even Von Neumann said "truth is much too complicated to
               | allow anything but approximations."
        
               | ttw44 wrote:
               | I love your point that avoiding oversimplifications leads
               | to disaster. It explains why I struggle to have a purist
               | mindset while also unable to explain why things go poorly
               | sometimes.
        
               | MITSardine wrote:
               | To be fair, "functional analysis is infinite dimensional
               | linear algebra" is a saying for a reason, that's an
               | intuition a good professor should have given you. Mine
               | gave me it so well, I still see no difference between R^n
               | and a Hilbert space! (on the dangers of intuitions)
               | 
               | This reminds me of a short lived stretch in French
               | mathematical education, the "Bourbaki years". For those
               | unaware, Nicolas Bourbaki was "a dozen mathematicians in
               | a trench coat" who, in the early 20th, reformed
               | mathematics from the ground up, their work is notoriously
               | opaque (to some, perhaps a revelation to others), if
               | rigorous. It served as inspiration for ambitious
               | mathematics education reforms in the 60s and 70s.
               | 
               | Some of the things my father had to contend with:
               | 
               | - naive set theory and non-10 basis arithmetic in primary
               | school (age 7)
               | 
               | - set theory in early middle school (ages 10/11), maps
               | over sets, so I imagine things like injectivity and
               | bijections. "[...] a different approach of arithmetic,
               | computations often replaced by a more abstract
               | theoretical approach": I wonder how that went in the
               | classroom
               | 
               | - general Algebra introduced at 15yo, groups, rings,
               | fields, vector spaces; 16yo mostly linear algebra (vector
               | spaces, linear mappings etc; in true French fashion I'll
               | bet they didn't see many 2x2 or 3x3 matrices that year)
               | 
               | I'm quoting Wikipedia "Mathematiques modernes" here, my
               | father only told me of the last point himself. Though I
               | do have his notebooks from early higher ed, they had
               | general topology before metric space topology, for
               | example, in year 1 or 2 (probably 1, because how can you
               | do anything before you know topology...). It was all like
               | this, a theory that builds on itself and you can't skip
               | any steps. A finite dimensional space is a particular
               | case of an infinite dimensional one, so you start with
               | the latter. Backwards from how things were constructed
               | and are understood by people.
               | 
               | The fact these reforms survived about 10 years and have
               | been completely reverted is testament that this approach
               | probably doesn't work.
        
               | alexey-salmin wrote:
               | > To be fair, "functional analysis is infinite
               | dimensional linear algebra" is a saying for a reason,
               | that's an intuition a good professor should have given
               | you. Mine gave me it so well, I still see no difference
               | between R^n and a Hilbert space! (on the dangers of
               | intuitions)
               | 
               | That's the thing: not only he didn't share this
               | intuition, he actively prohibited people from bringing it
               | up in the class because it can lead to mistakes.
               | 
               | The program was to start with most generic cases (Banach
               | spaces, metric spaces) and prove whatever is provable
               | there, then continue adding assumptions one by one and
               | proving stronger and stronger theorems. I think we've
               | reached Hilbert spaces by the end of the year and that
               | was a gotcha moment for many students (wait, these
               | vectors were functions the whole time?), but it was too
               | late. Everyone failed miserably at proving or
               | understanding all the preceding theorems because without
               | the intuition it turns into a game of symbols with no
               | structure or hope. The only recourse were those bootleg
               | analogies from finite spaces and Fourier analysis that a
               | few students knew or came up with.
               | 
               | The "New Math" you mention above gives a good frame of
               | reference. A beautiful curriculum that's almost
               | impossible to understand unless you already learned math
               | the normal way -- a formally incorrect and inconsistent
               | but reliable way.
               | 
               | I also made similar mistake myself when I tried to teach
               | the C language to 12 y.o kids without saying the dreaded
               | "just write it like that, you'll understand later". That
               | experiment failed completely but I only understood why
               | two years later when I myself was subjected to the
               | functional analysis course. Or I think the complete
               | realization came to me even later, with the C language
               | experiment and the functional analysis story becoming
               | pieces of the same puzzle.
        
               | tremon wrote:
               | _It 's necessary to teach oversimplified things to small
               | minds, even oversimplified to the extent of being
               | incorrect._
               | 
               | Please get off your elitist horse. "Small minds" has
               | nothing to do with it, it is mostly a matter of topic
               | specialization. You even acknowledge this yourself in the
               | next few paragraphs.
               | 
               | Also, as attested by another current front page story
               | (https://news.ycombinator.com/item?id=43470138), it's
               | incorrect even when talking about children.
        
               | alexey-salmin wrote:
               | What's your point then?
               | 
               | All minds alike, big and small, benefit from
               | simplification. I was replying to a comment that
               | specifically referenced "small minds", that's all.
        
             | teleforce wrote:
             | > If adults want to remain ignorant, so be it, but at least
             | teach children the truth. Let them know that life is
             | incredibly complicated, it's a mystery we're still solving,
             | and they could be the ones to help figure it out. Don't
             | overly simplify things for small minds, it creates a false
             | picture and it kills the imagination.
             | 
             | Yes we should have this firm stance and accept nothing less
             | especially when it come to something fundamental such as
             | the Theory of Evolution. It's a shame that some scientists
             | are even promoting that human come from monkey while the
             | fact that from Darwin own observation was that monkey and
             | human probably share the same ancestor not human come from
             | monkey and even that's debatable. They even create a false
             | picture that now become a "universal truth" printed on
             | people shirts and kind of accepted as truth as far as
             | layman and kids are concerned [1]. But now even the one
             | making the picture is regretting it but the damaged has
             | already been done. Einstein once mentioned "Everything
             | should be made as simple as possible, but not simpler". By
             | making things simpler than simpler (pun intended), we are
             | creating distortion and falsehood that can take years and
             | perhaps centuries to be fixed, and just ask the "flat
             | earth" crowd.
             | 
             | [1] On the Origins of "The March of Progress":
             | 
             | https://sites.wustl.edu/prosper/on-the-origins-of-the-
             | march-...
        
             | ivell wrote:
             | People gain understanding when we relate things to their
             | frame of reference. Kids have very limited life experience
             | and their frame of reference is very low. Introducing new
             | concepts that are not relatable would create huge gaps in
             | real understanding.
             | 
             | For example, explaining encryption as a lock to prevent
             | thieves from stealing data is much more understandable to
             | kids than going into actual definition of encryption. Lock
             | is something concrete that they have seen, while encryption
             | is an abstract concept hard to grasp.
        
               | TeMPOraL wrote:
               | Except encryption is nothing like a lock, and "stealing
               | data" is a problematic term, as it's stretching the
               | concept of theft way past its common meaning - it's using
               | the term "stealing" in the exact same way people saying
               | "software piracy is stealing" are. So that's already
               | providing completely twisted mental model to kids. And it
               | stems in big part from trying to pass one specific
               | application as an answer to what the thing is.
               | 
               | (What is a car? It's like extra legs for your butt, that
               | can run very fast and carry multiple butts.)
               | 
               | You can get much closer to the truth by explaining
               | encryption as a trick to make words understandable only
               | to those who know the trick. You can play a substitution
               | game with your kids, explain how you and them could agree
               | that when one says "snake" it means "I", etc. and so
               | "snake eats green grass" means "I am very hungry", and
               | that you'll understand them but no one else will, etc.
               | 
               | At any given age, kids are as likely to understand
               | secrecy as they're to understand why locks exist, so it's
               | really just a choice of not using a bad and confusing
               | analogy.
        
               | ivell wrote:
               | Substitution is a new concept for kids. Not something
               | they can readily understand. So you need to explain that
               | in terms of a game. Kids know what secrets are. But from
               | their point of view, why even talk about it if it is
               | secret? Why can't we go to another place and talk
               | secretly? Why do we need to talk secrets in public using
               | substitution? Since they do not see obvious need for it
               | in their daily life and there are workarounds for it,
               | they do not get why there is a need for substitution.
               | 
               | By the time we explain all these to them, they would have
               | already lost interest, or context and would easily forget
               | the whole thing.
        
               | TeMPOraL wrote:
               | > _Kids know what secrets are. But from their point of
               | view, why even talk about it if it is secret? Why can 't
               | we go to another place and talk secretly? Why do we need
               | to talk secrets in public using substitution?_
               | 
               | Connect this to surprise gifts and birthday invites. Or
               | another thing that resonates with them.
               | 
               | Explaining locks and their purpose ain't any easier. Just
               | yesterday, my daughter asked me why I'm locking the extra
               | set of doors we're normally keeping open, and when I told
               | her about the just-issued warning about burglaries in our
               | area, well, there's a lot of context to explain before a
               | 5yo gets why locking the doors is the right thing to do
               | in this scenario.
               | 
               | I mean, there's always a lot of explaining to do with
               | kids anyway. So far, I've never had trouble giving them
               | real explanations and letting them know when they're
               | simplified.
        
               | mlhpdx wrote:
               | > Substitution is a new concept for kids.
               | 
               | Children learn substitution with language. Hand signs and
               | words are substituted for the objects, feelings and
               | actions they know inherently. It's tempting to apply
               | adult context on children but it's a mistake.
        
               | Izkata wrote:
               | Encryption might not even need much any explanation, just
               | using familiar terms: kids come up with "secret
               | languages" all the time between friends and siblings.
        
             | wegfawefgawefg wrote:
             | went to school till 2012, highly esteemed US high school,
             | was still taught then
        
             | dvdkon wrote:
             | The four kingdoms system is taught because it is useful;
             | not for science, but for everyday communication.
             | 
             | We use a similarly flawed model every day: fruit and
             | vegetables. What's in one group or the other is based on
             | vague similarities and is mostly arbitrary, but it's still
             | useful to split the huge category of "edible plant parts"
             | into more manageable chunks.
             | 
             | Anyone familiar with apples and pears will likely see an
             | orange and say it's a fruit. Likewise anyone familiar with
             | cats and dogs will see a boar and think "animal", not
             | "plant" or "fungus". A genetics-based assessment would be
             | more "correct", yes, but impossible on a walk or in the
             | store.
             | 
             | Primary school teachers, from my experience, have a
             | tendency to present things as " _the_ truth " and accept no
             | deviation from their own word. I think changing that would
             | be a good step in fostering creativity in children, much
             | more than skipping less-accurate models.
        
               | thaumasiotes wrote:
               | > We use a similarly flawed model every day: fruit and
               | vegetables. What's in one group or the other is based on
               | vague similarities and is mostly arbitrary, but it's
               | still useful to split the huge category of "edible plant
               | parts" into more manageable chunks.
               | 
               | This is completely wrong. Those categories aren't any
               | smaller, in a practical sense, than the combined category
               | "plants". The gain in manageability is zero.
               | 
               | The reason we divide the categories that way is that we
               | put them to different purposes, not that they'd be too
               | large if combined.
        
             | mapt wrote:
             | But... but... every cell has one spherical nucleus, one
             | spherical chloroplast for plants or spherical mitochondria
             | for animals, and a host of other features depicted in this
             | helpful diagram that you're going to have to copy from
             | memory.
        
             | exe34 wrote:
             | > it creates a false picture and it kills the imagination.
             | 
             | this reminds me of a certain voting population that think
             | male and female are very simple XY and XX things and
             | nothing else exists.
             | 
             | unfortunately a lot of people take dumbed down models and
             | mistake the map for the terrain.
             | 
             | I'm not sure there's a cure for it - I have cousins who
             | went through the same schooling and came out with very
             | different abilities to generalise.
        
             | __MatrixMan__ wrote:
             | Would you also propose we skip over the Bohr model of the
             | atom and teach Schrodinger to ten year olds?
        
             | NikolaNovak wrote:
             | >>Don't overly simplify things for small minds, it creates
             | a false picture and it kills the imagination.
             | 
             | I think we can all agree that in pedagogy and teaching, you
             | have to start simplified; then it becomes a more productive
             | discussion on what constitutes _over_ simplifying, rather
             | than a binary  "do or do not over simplify". We can and
             | absolutely should be open about complexity of the world,
             | but at the same time be aware that average person goes
             | through between 8 and 16 years of education (with important
             | outliers on either side of the bell curve), and trying to
             | fit all complexity and all the knowledge on day one
             | generally does not lead to productive results.
             | 
             | The first lesson of the biology in this area I think is not
             | so much "there are these and precisely these 4 or 7 or 9
             | fixed and immutable categories of life", but... "life can
             | be categorized, and living creatures that look different
             | actually have similarities". There's wonder, and insight,
             | and enlightenment right there that's probably going to
             | stick longer for vast vast vast majority of people, than
             | the specifics of whether there were 4 or 7 or 9 categories.
             | Heck, we changed number of planets and our understanding of
             | "planet" remained the same :).
        
           | mjan22640 wrote:
           | > Who can understand and remember that?
           | 
           | Anybody who is interested in it
        
           | f1shy wrote:
           | At which point started to be important in science that
           | "public can understand"? I think if something is a better
           | explanation for the reality, we ahould go for it, even if it
           | is difficult for the public.
           | 
           | Disclaimer: in this case I have absolutely no idea what is
           | better. But the rationale seems wrong.
        
             | mmooss wrote:
             | We can and, IMHO, should do both. Scientists explaining
             | physical realities, such as gravity, don't use advanced
             | mathematics - it would be pointless.
        
           | idiotsecant wrote:
           | Yes I agree. 4 humors were enough for medieval europe,
           | they're good enough for me!! Who can remember all this
           | complicated 'germ theory of disease' liberal junk?! There
           | must be _hundreds_ of these supposed  'germs' out there! No
           | sir, no thank you!
        
         | dreamcompiler wrote:
         | And then there are viruses, which don't show up on the tree of
         | life at all because there's no consensus that they even
         | constitute "life."
        
           | Ultimatt wrote:
           | Pretty sure anyone who knows anything about viruses would say
           | they are alive. Or at least as alive as parasitic nano
           | archaea with genomes smaller than the viruses living right
           | next to them... The philosophical way to look at it is humans
           | aren't alive in the space between planets they live inside
           | these little hard shells, then when they get to a planet they
           | go wild using all the other resources around them made of
           | biomass. Viruses are just this, their biome isn't the wider
           | one you participate in instead they are sub-cellular life, in
           | the same way you are sub-planetary life. Humans don't make
           | the oxygen atmosphere on the planet themselves, they
           | parasitize this feature of planets from other life. In the
           | same way viruses use cellular machinery.
        
             | beeflet wrote:
             | If humans create oxygen with a machine, is that parasitic?
        
             | ndsipa_pomu wrote:
             | > Pretty sure anyone who knows anything about viruses would
             | say they are alive
             | 
             | Whilst I don't doubt that, viruses don't abide by typical
             | definitions of life that would include self-replication.
             | Obviously, they do replicate, but not by themselves.
        
               | btilly wrote:
               | Men like me also don't replicate by ourselves. Does that
               | mean that we are not alive?
        
               | Izkata wrote:
               | I thought "has a metabolism" (consumes food and produces
               | waste) was the one viruses didn't fit with.
        
             | dreamcompiler wrote:
             | This guy agrees with you:
             | 
             | https://www.youtube.com/watch?v=mgS1Lwr8gq8
        
           | GioM wrote:
           | I feel like what trips people up is the abstraction layer.
           | 
           | Viruses are abstracted on top of other living things in the
           | same way that animals are abstracted on top of plants, in
           | that they both require the lower layer of abstraction for
           | their basic survival.
        
         | renewiltord wrote:
         | One of the great wonders of clustering algorithms is that no
         | matter what k > n you choose, you can construct k clusters.
         | Then we can argue about the clusters and about k. It is said
         | that when Humanity discovers the One True K, the taxonomy will
         | disappear and be replaced by a different one.
        
         | boxed wrote:
         | From what I've gathered it's been pretty clear for a while now
         | that archea is basal to eucarya, meaning humans are archea.
        
         | adrian_b wrote:
         | When classifying living beings, a single classification
         | criterion is not good enough.
         | 
         | One classification criterion is descendance from a common
         | ancestor, i.e. cladistic classification.
         | 
         | In many cases this is the most useful classification criterion,
         | because the living beings grouped in a class defined by having
         | a common ancestor share a lot of characteristics inherited from
         | their common ancestor, so when using a name that is applied to
         | that class of living beings, the name provides a lot of
         | information about any member.
         | 
         | However there are at least 2 reasons which complicate such a
         | cladistic classification.
         | 
         | One is that the graph of the evolution of living beings is not
         | strictly a tree, because there are hybridization events that
         | merge branches.
         | 
         | Sometimes the branches that are merged are closely related,
         | e.g. between different species of felids, so they do not change
         | the overall aspect of the tree. However there are also merges
         | between extremely distant branches, like the symbiosis event
         | between some blue-green alga (Cyanobacteria) and some
         | unicellular eukaryote, which has created the ancestors of all
         | eukaryotes that are oxygenic phototrophs, including the green
         | plants.
         | 
         | Moreover, there have been additional symbiosis events that have
         | merged additional eukaryote branches and which have created the
         | ancestors of other eukaryote phototrophs, e.g. the ancestor of
         | brown algae.
         | 
         | After any such hybridization event, there is the question how
         | you should classify the descendants of the hybrid ancestor, as
         | belonging to one branch or to the other branch that have been
         | merged.
         | 
         | For some purposes it is more useful to classify all eukaryote
         | phototrophs based on the branch that has provided the main
         | nucleus of the hybrid cell, and this is the most frequently
         | used classification.
         | 
         | For other purposes it is more useful to group together all the
         | living beings that are oxygenic phototrophs, including various
         | kinds of eukaryotes and also the blue-green algae, and divide
         | them based on the evolution tree of their light-capturing
         | organelles, i.e. the chloroplasts.
         | 
         | This is also a valid cladistic classification, because all
         | oxygenic phototrophs, both eukaryotes and prokaryotes, are the
         | descendants of a single common ancestor, some ancient
         | phototrophic bacteria that has switched from oxidizing
         | manganese using light energy, to oxidizing water, which
         | releases free dioxygen.
         | 
         | Even when there are no branch merges due to hybridization,
         | there remains the problem that in the set of descendants from a
         | single ancestor there are some that are conservative, so they
         | still resemble a lot with their ancestor, and some that are
         | progressive, which may have changed a lot, so they no longer
         | resemble with their ancestor.
         | 
         | In this case, using the name of the entire group provides very
         | little information, because most characteristics that were
         | valid for the ancestor may be completely inapplicable to the
         | subgroups that have become different. In such a case, defining
         | and using a name for the paraphiletic set of subgroups that
         | remains after excluding the subgroups that have evolved
         | divergently may be more useful in practice than using only
         | names based on a cladistic classification. For instance the use
         | of the word "fish" with its traditional paraphiletic meaning,
         | i.e. "vertebrate that is not a tetrapod", is very useful and
         | including tetrapods in "fishes" is stupid, because that would
         | make "fish" and "vertebrate" synonymous and it would require
         | the frequent use of the expression "fishes that are not
         | tetrapods", whenever something is said that is correct only for
         | vertebrates that are not tetrapods, or of the expression "bony
         | fishes that are not tetrapods", for things valid for bony
         | fishes, but not for tetrapods.
         | 
         | While in many contexts it is very useful to know that both
         | fungi and animals are opisthokonts, and there are a few facts
         | that apply to all opisthokonts, regardless whether they are
         | fungi, animals or other opisthokonts more closely related to
         | fungi or more closely related to animals, the number of cases
         | when it is much more important to distinguish fungi from
         | animals is much greater than the number of cases when their
         | common ancestry is relevant.
         | 
         | Animals are multicellular eukaryotes that have retained the
         | primitive lifestyle of the eukaryotes, i.e. feeding by
         | ingesting other living beings, which is made possible by cell
         | motility.
         | 
         | Fungi are multicellular eukaryotes that have abandoned the
         | primitive lifestyle of the eukaryotes, and which have reverted
         | to a lifestyle similar to that of heterotrophic bacteria, just
         | with a different topology of the interface between cells and
         | environment (i.e. with a branched multicellular mycelium
         | instead of multiple small separate cells).
         | 
         | This change in lifestyle has been caused by the transition to a
         | terrestrial life, which has been accomplished with a thick cell
         | wall (of chitin) for avoiding dehydration, which has suppressed
         | cell motility, making impossible the ingestion of other living
         | beings, the same as for bacteria. Moreover the transition to a
         | bacterial lifestyle has also been enabled by several lateral
         | gene transfers from some bacteria, which have provided some
         | additional metabolic pathways that enable fungi to survive when
         | feeding with simpler substances than required by most
         | eukaryotes, including animals.
         | 
         | So even from a cladistic point of view, fungi have some
         | additional bacterial ancestors for their DNA, besides the
         | common opisthokont ancestor that they share with the animals.
         | 
         | Animals are unique among eukaryotes, because all other
         | multicellular eukaryotes have abandoned the primitive lifestyle
         | of eukaryotes, by taking the lifestyles of either heterotrophic
         | or phototrophic bacteria. However for both other kinds of
         | lifestyle changes there are multiple examples, i.e. besides
         | true fungi that are opisthokonts there are several other groups
         | of fungous eukaryotes that are not opisthokonts, the best known
         | being the Oomycetes. There are also bacteria with fungal
         | lifestyle and topology, e.g. actinomycetes a.k.a.
         | Actinobacteria.
         | 
         | If we will ever explore other planets with life, those living
         | beings will not have a common ancestor with the living beings
         | from our planet, but nevertheless it will still be possible to
         | classify them based on their lifestyle in about a half of dozen
         | groups that would be analogous to animals (multicellular living
         | beings that feed by ingestion, so they must be mobile or they
         | must have at least some mobile parts), fungi (multicellular
         | beings that grow into their food, absorbing it after external
         | digestion), oxygenic phototrophs, anoxygenic phototrophs,
         | chemoautotrophs, unicellular equivalents of animals and fungi,
         | like protozoa and heterotrophic bacteria, viruses.
         | 
         | These differences in lifestyles are more important in most
         | contexts than the descendance from a common ancestor.
         | 
         | So while it is useful to have the name Opisthokonta for the
         | contexts where fungi and animals and their close relatives must
         | be included, it is much more frequent to need to speak
         | separately about fungi and other fungous organisms on one hand,
         | and animals on the other hand.
         | 
         | I agree that the term "kingdom" is obsolete when used in the
         | context of a cladistic classification of the living beings.
         | 
         | Perhaps it should be retained for a non-cladistic
         | classification of the living beings, based on the few
         | fundamental lifestyles that are possible, and which would
         | remain valid even for extraterrestrial living beings.
        
           | danmur wrote:
           | Glad to see diamond inheritance being a problem in other
           | fields
        
             | bregma wrote:
             | They should rewrite biology in Rust.
        
               | timeon wrote:
               | Just to stay on topic, Rust Language was named after
               | fungus. "over-engineered for survival"
        
             | TeMPOraL wrote:
             | It's not a problem, it's a feature.
             | 
             | Or rather, it's only a problem when you insist on rigid
             | perspective that makes it a problem.
             | 
             | (The real problem is that so many people insist on viewing
             | things as trees, when their natural shape is directed
             | graph.)
        
           | Ultimatt wrote:
           | I dunno you can mostly solve for this, look at the majority
           | share of the genome in a compartment with a single membrane
           | contained by the outer membrane (by definition for
           | endosymbiogenesis), with the DNA molecules containing the
           | highest quantity of coding gene content. That's the thing you
           | do the cladistic descent on. Just because I'm carrying a load
           | of bacterial symbionts that are better at digesting wheat
           | doesn't make me a different species to humans who mostly eat
           | rice. That I eventually carry those as an endosymbiont then
           | eventually just a sack of genes doesn't really change who'
           | was the boss in this situation, or who I'm able to reproduce
           | with that entire time as a species either. Symbiogenesis is
           | very much like this, look at Hatena arenicola if you want to
           | see this emerging to see how it interacts with descent. This
           | is really the difference between understanding reproductive
           | relationships specifically, vs wider ecology. I agree that
           | symbiogenesis is like this weird one where its both only
           | going to happen through other ecological relationships and
           | then reproduction. But there really is a clear cut time one
           | turns into the other, with the fate of one of those organisms
           | of the combination "winning" even though profoundly altered.
           | Symbiodinium is probably another good example, it has loads
           | of ecological partners and little remnants of all of those
           | histories in its genetic material and organelle arrangement.
           | But its still an obvious species, with all the other oddball
           | dinoflagellates that act and look like it also appearing to
           | have some common descent from something much simpler and
           | eukaryotic.
           | 
           | As a programmer symbiogenesis is a mixin or interface not a
           | class.
        
             | adrian_b wrote:
             | It is not that simple, because a large part of the genes
             | that originally belonged to the mitochondria or to the
             | chloroplasts have been transferred into the nucleus and
             | they are now completely integrated into it, even if
             | evolution trees will show that those genes have a different
             | history than the remainder of the nucleus.
             | 
             | So even if you want to use only the DNA inside the nucleus
             | for a cladistic classification, that does not produce a
             | tree of evolution, but only a directed graph of genetic
             | information flows, with many important hybridization
             | events. While initially mitochondria and chloroplasts were
             | just symbionts, like the useful bacteria in the human gut,
             | eventually that symbiosis has become a full hybridization,
             | with mixing and integration of the genetic information.
             | 
             | The official cladistic classification produces a tree from
             | the directed graph of the evolution by cutting the branches
             | that are considered to be less important.
             | 
             | Sometimes this is indeed the best choice, but there are
             | contexts in which the genetic information brought through
             | the minor branches is actually that which determines most
             | of the importance of an organism in an ecosystem.
             | 
             | E.g. in many contexts the most important feature of a
             | living being is whether it is an oxygenic phototroph due to
             | inheriting genetic information from some blue-green algae,
             | i.e. that it is a primary producer in the ecosystem, and
             | not the features that depend on which is the exact
             | eukaryotic group from which most of its nucleus has been
             | inherited. For instance, it is more frequently useful to
             | group together brown algae with red algae (whose
             | chloroplasts share a common ancestor), than to group brown
             | algae with some non-phototrophic stramenopiles (which share
             | a common ancestor for most of the nuclear DNA), with which
             | they share only inherited characters that need an electron
             | microscope for detection.
        
           | someone7x wrote:
           | As an unscientific layperson this was a riveting analysis,
           | thanks for interesting reading.
        
       | mmooss wrote:
       | > All life on Earth is classified within three domains --
       | bacteria, archaea and eukarya -- with eukarya containing all
       | multicellular organisms
       | 
       | Single cell eukaryotes also exist. Is it strictly true that there
       | are no multicellular prokaryotes (what they call bacteria) or
       | archaea? No exceptions at all?
        
         | dragonwriter wrote:
         | > Single cell eukaryotes also exist.
         | 
         | Yes, "with eukarya containing all multicellular organisms" does
         | not mean "all eukarya are multicellular organisms" it means
         | "multicellular organisms are a subset of eukarya".
         | 
         | > Is it strictly true that there are no multicellular
         | prokaryotes (what they call bacteria) or archaea?
         | 
         | First off, "prokaryotes (what they call bacteria)" is
         | incorrect. Both archaea and bacteria, in the three-domain model
         | referenced in the article, are prokaryotes.
         | 
         | Second, correct, everything understood as a multicellular
         | organism -- as distinct from colonies of unicellular organisms
         | -- is composed of cells with nuclei, classified in eukarya in
         | the three-domain model.
         | 
         | (There is a newer proposed two-domain model which disposes with
         | Eukarya as a top-level domain, folding it under Archaea; in
         | that model, clearly, there are multicellular Archaea.)
        
           | mmooss wrote:
           | > Both archaea and bacteria, in the three-domain model
           | referenced in the article, are prokaryotes.
           | 
           | I suppose it depends on which model you use, and as discussed
           | they seem to vary and be in flux right now, but the three
           | domain model I learned was prokaryotes, archaea, and
           | eukaryotes - the first two being different domains.
           | 
           | > Yes, "with eukarya containing all multicellular organisms"
           | does not mean "all eukarya are multicellular organisms" it
           | means "multicellular organisms are a subset of eukarya".
           | 
           | We agree. I don't grasp your point?
        
             | xdavidliu wrote:
             | > We agree. I don't grasp your point?
             | 
             | your original comment didn't refute the quote, but one
             | needs to squint hard to see that you didn't refute it.
        
               | mmooss wrote:
               | I wasn't trying to refute it; I was adding information:
               | The quote didn't mention or imply that there are also
               | single-cell eukaryotes, so I added that detail.
               | 
               | Not everything is an argument or attack.
        
         | zdragnar wrote:
         | Cyanobacteria are an example of prokaryotes that, while not
         | truly multicellular, may at times exhibit similar behavior.
         | 
         | They can form colonies and, within groups that share walls,
         | specialize into different functions such as photosynthesis or
         | nitrogen fixing behavior. This enables the colony to adapt to
         | changing conditions that, while still made up of individual
         | organisms, collectively appear to function similarly to a
         | single multicellular one.
         | 
         | With that said, there aren't any examples of truly
         | multicellular organisms within either domain. Just as an ant
         | colony is not a single organism, cyanobacteria colony
         | specializations are not examples of organs.
        
         | danwills wrote:
         | I think prokaryotic bacteria can form biofilms which seems like
         | one step on the road to multicellularity, but that's more like
         | a community, and iiuc most biofilms these days at least contain
         | eukaryotic yeasts. I don't know of any actually-properly-
         | multicellular prokaryotes, but maybe I need to read up?
        
       | BrenBarn wrote:
       | > Upon examining the internal structure of the fossilized
       | Prototaxites, the researchers found that its interior was made up
       | of a series of tubes
       | 
       | Who knew the internet evolved millions of years ago?
        
         | exe34 wrote:
         | I love the idea that fungi house the Polises of Greg Egan.
        
         | culi wrote:
         | it's called the wood wide web (seriously)
        
           | ddejohn wrote:
           | Scientists are so adorable
        
       | bbor wrote:
       | I saw this on bsky a few days ago and was fascinated, so glad to
       | see it made its way here! I had this question that went
       | unanswered, so hopefully there's some experts/fellow musers here:
       | 
       |  _Why grow up if you don 't need photosynthesis?_
       | 
       | From my perusal of The Literature (AKA an amazing Wikipedia
       | article + the paper discussed in this link), we have a few strong
       | theories about the prototaxites:
       | 
       | 1. They fed off decaying matter in the soil through a vast
       | network of mycelia/roots, and didn't photosynthesize.
       | 
       | 2. They grew large, trunk-like protrusions, but without any
       | branches or leaves (that were fossilized, at least). Like, way,
       | _way_ taller than the bugs, moss, and short weird proto-grass
       | around at the time.
       | 
       | 3. These protrusions were regularly burrowed into by
       | aforementioned bugs, which surely was a major health risk.
       | 
       | 4. Even before this analysis, they've always been something of an
       | oddball compared to contemporary life -- so everything's on the
       | table, so to speak.
       | 
       | Given those facts, I'm pretty stumped as to what evolutionary
       | pressures might have driven them to grow upwards. At first I
       | considered spore (seed?) dispersal, but mushrooms seem to get
       | along just fine without towering above everything else, and I
       | don't think wind speeds were way lower or anything. Anyone here
       | have any better guesses?
        
         | clort wrote:
         | When you feed off decaying matter, hosting a colony of bugs
         | which go out daily, bring back food and leave waste all around
         | your environment sounds like a pretty good strategy when you
         | don't have any way to move to better pastures?
        
           | boxed wrote:
           | Isn't this a long time before insects and such though?
        
             | anentropic wrote:
             | Wikipedia says:
             | 
             | "evidence of arthropod boreholes in Prototaxites has been
             | found from the early and late Devonian, suggesting the
             | organism survived the stress of boring for many millions of
             | years.[30] Intriguingly, boreholes appeared in Prototaxites
             | long before plants developed a structurally equivalent
             | woody stem, and it is possible that the borers transferred
             | to plants when these evolved"
             | 
             | and for Arthropods:
             | 
             | "The evolutionary ancestry of arthropods dates back to the
             | Cambrian period."
             | 
             | which is about 100 million years before the Devonian
             | 
             | also:
             | 
             | "The oldest known arachnid is the trigonotarbid
             | Palaeotarbus jerami, from about 420 million years ago in
             | the Silurian period.[82][Note 3] Attercopus fimbriunguis,
             | from 386 million years ago in the Devonian period, bears
             | the earliest known silk-producing spigots"
             | 
             | so there could have been all sorts of weird and wonderful
             | bugs burrowing into Prototaxites I guess
        
         | dwroberts wrote:
         | One reason to grow upward is also just the need for oxygen.
         | Mushrooms do this too - they tend to colonise and begin to
         | fruit in high CO2 concentrations, but eventually want to escape
         | it. And you can see the negative side effects of not being able
         | to do this in mushrooms too (if the CO2 is too intense they
         | grow too fast relative to their thickness [trying to reach air]
         | and become nasty and stringy looking)
        
         | gg80 wrote:
         | If I remember correctly, there was this hypothesis that these
         | things were covered by symbiotic algae so the idea is that they
         | grew tall to increase the photosynthesis of their symbiotic
         | organism (so kind of a giant lichen). But I can't find the
         | source anymore, and I think that there isn't much evidence of
         | any photobiont.
        
       | baalimago wrote:
       | I wonder what it tastes like
        
       | intsunny wrote:
       | The article about the study writes: `The study has not yet been
       | peer-reviewed.`
       | 
       | We should just stop reading the article then and there. This is a
       | major method of how a single study can perpetuate fake science
       | and fake news.
        
         | verisimi wrote:
         | > This is a major method of how a single study can perpetuate
         | fake science and fake news.
         | 
         | It's a feature, not a bug.
        
           | 1970-01-01 wrote:
           | Clickbait is a bug tagged with WON'T FIX
        
         | jfengel wrote:
         | We should, but we don't.
         | 
         | People want the news _now_. They don 't want to wait for it to
         | be peer reviewed, or even cursorily checked. There is an
         | infinite maw for information, and it has already consumed every
         | single known fact.
         | 
         | If you want science, you'll wait a month, because it's not
         | actually urgent. These species waited hundreds of millions of
         | years and it'll still be there in a few weeks.
         | 
         | If you want entertainment, you want it right this instant. And
         | that's what LiveScience exists to do.
         | 
         | So you really should have stopped reading as soon as you saw
         | the URL.
        
       | countWSS wrote:
       | Perhaps its a Ediacaran biota remnant, that had very diverse
       | groups some of which could be misclassified because the consensus
       | is against Ediacaran relics existing past their period.
        
       | neuroelectron wrote:
       | It's likely simply a fungus that used lignin instead of chitin.
       | It went instinct when fungus learned to attack lignin.
        
       | hydrogen7800 wrote:
       | Discussions about classifying the domains of life aside, this
       | article implies that there was, or could have been entire domains
       | that are now extinct. Is this the case?
        
         | andrewflnr wrote:
         | That's really hard to answer without tackling the
         | classification question head on. Do you mean groups that "would
         | have" been considered a domain if humans had been around at the
         | time? Or groups that are in some sense different from other
         | domains to the same degree those domains are from each other?
         | 
         | Whether we tag something as a domain also depends on its
         | abundance and/or visibility. I bet if you take dug into
         | microorganisms, you'd find tons that are as different from
         | plants and animals as plants and animals are fun each other.
         | But they all tend to get lumped in as "protists" or something
         | because... we kinda don't care. I wouldn't be surprised if we
         | somehow found out there were a lot of extinct critters in
         | equivalent situations.
        
           | hydrogen7800 wrote:
           | In my draft reply, I was going to add "is this even the right
           | question", meaning "is the taxonomy more of a human construct
           | than a natural one". It seems the answer is yes.
           | 
           | >Or groups that are in some sense different from other
           | domains to the same degree those domains are from each other?
           | 
           | This.
        
             | andrewflnr wrote:
             | I'm not a biologist, and especially not a microbiologist,
             | so you should take what I say with a decent chunk of salt.
             | That said, microbes are so wildly diverse that that version
             | of the question sounds a lot like "are there any big
             | extinct clades of microbes", which, I don't know, microbes
             | are pretty persistent. But probably.
             | 
             | As for macroscopic life, there are some Ediacaran critters
             | like rangeomorphs and tribrachidium that (to my knowledge)
             | are not conclusively associated with any existing domain.
             | So who knows about those guys.
        
         | tremon wrote:
         | Depends on how wide your definition on "domain" is. Most of the
         | dinosaur lineages have gone extinct, it's not too wild an
         | assumption to assume the same is true for entire lineages of
         | other species. So the safe answer to your question is
         | "probably, yes".
        
       | damnitbuilds wrote:
       | You never did like my mother.
        
       | riwsky wrote:
       | Oh, that? That's just Bob. He helps out around the busy season
       | sometimes. Didn't know this much about his family, though--neat!
        
       | roughly wrote:
       | Acknowledging this is a pre-print, but it is _wild_ that we can
       | do this kind of analysis on a species that went extinct nearly a
       | third of a billion years before the first hominids emerged. Every
       | now and again I'm reminded of just how far we've extended our
       | sensorium as a species.
        
       | ChuckMcM wrote:
       | This was an interesting read, and reminded me how paleo-biology
       | is the closest thing to exobiology we've got. Looking at the
       | different biomes that emerged on planet earth over a billion
       | years feels equivalent to looking at a thousand different planets
       | at the same time. Basically a thousand chance to see what that
       | 'megayear' produced, life wise.
        
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