[HN Gopher] A Science in the Shadows
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       A Science in the Shadows
        
       Author : merename
       Score  : 38 points
       Date   : 2021-08-27 17:45 UTC (1 days ago)
        
 (HTM) web link (www.washingtonpost.com)
 (TXT) w3m dump (www.washingtonpost.com)
        
       | AntiDyatlov wrote:
       | Science as currently practiced is an existential risk:
       | 
       | https://www.facebook.com/yudkowsky/posts/10159653334879228
        
       | systemvoltage wrote:
       | Why aren't we discussing Gain-of-function risks more? It seems to
       | be a few orders of magnitude more risky than nuclear disasters
       | such as one in Fukushima and Chernobyl. If Sars-cov-2 was
       | accidentally released from the Wuhan Lab, it has brought the
       | entire world to its knees, trillions of dollars of damage,
       | millions of lives lost and immeasurable impact to the society
       | probably for many years to come. The only reason I am comparing
       | with Nuclear disasters is not to diminish their risks, but to say
       | that it gets disproportional media attention compared to
       | something that until last year I've never heard of, i.e. "Gain of
       | function" research on viruses.
       | 
       | I am almost angry and furious - why is this not discussed with
       | 100x more media stories and scrutiny about what safeguards are in
       | place, how level 5 biolabs are secured and what are the ways it
       | can fail!?
       | 
       | Even if we have proven that it was not released from the Wuhan
       | lab, the risks are still present and absolutely alarming.
        
         | AntiDyatlov wrote:
         | The world resembles Beirut in 2019 more than one would think.
        
       | xpe wrote:
       | > What is 'gain of function'?
       | 
       | > The term refers to techniques used to enhance aspects of a
       | pathogen. This is usually done via a combination of gene editing
       | and serial passage of the pathogen between animal hosts.
        
       | jpeloquin wrote:
       | One of the frustrating things about discussing gain of function
       | research is the vague and inconsistent definitions in play. Does
       | a discussion participant consider it to be any application of
       | recombinant DNA/RNA to viable viruses, bacteria, fungi,
       | protozoans, etc.? Or only when the methods are expected to
       | increase pathogenicity, and if so, by how much? Most everyone
       | probably agrees that "the subset of research that enhances a
       | pathogen to make it likely highly transmissible and virulent in
       | humans (enhanced PPP)" [0] warrants either extreme caution or a
       | straightforward ban, but the lower risk threshold that someone
       | considers to demarcate ok / not ok just doesn't come across at
       | all.
       | 
       | To illustrate that the definition is both broad and variable:
       | "The term gain-of-function (GOF) research describes a type of
       | research that modifies a biological agent so that it confers new
       | or enhanced activity to that agent. Some scientists use the term
       | broadly to refer to any such modification. However, not all
       | research described as GOF entails the same level of risk. For
       | example, research that involves the modification of bacteria to
       | allow production of human insulin, or the altering of the genetic
       | program of immune cells in CAR-T cell therapy to treat cancer
       | generally would be considered low risk" [0]. It's also possible
       | to modify the agent to make it safer while preserving other
       | aspects that need to be studied. For example, creating a model
       | virus that has no pathogenicity, but depends on the Covid spike
       | protein for replication so it can be used to study receptor
       | binding and vaccine evasion safely.
       | 
       | I wish we'd collectively chosen a clearer term, like "engineered
       | potentially pandemic pathogenicity", that more closely matches
       | our collective Covid-inspired concerns. Arguments about "gain of
       | function" gives the dangerous stuff cover by mixing it together
       | with innocuous experiments. Lack of clarity makes it easier to
       | synthesize controversy, accidentally or intentionally, by mixing
       | together statements about very different kinds of gain of
       | function work. The Post says they identified 18 projects that
       | "appeared to include gain-of-function experiments"--they should
       | say exactly what risks those projects pose instead of leaving us
       | with merely a vague and sinister implication.
       | 
       | [0] https://www.nih.gov/news-events/gain-function-research-
       | invol...
        
       | feral wrote:
       | The idea that we do gain of function research in urban areas is
       | mind boggling to me.
       | 
       | If someone told you they were working on experimental nuclear
       | warheads, you'd think they were crazy if their lab was in a city.
       | 
       | But they experiment with dangerous pathogens in cities of
       | millions of people, and the janitors go home to their families
       | every evening.
       | 
       | I don't know whether covid escaped from a lab, and I don't know
       | whether the benefits of GoF research outweighs the risks.
       | 
       | But if the research is so important, it should be done in the
       | desert somewhere with a long quarantine period on exit.
       | 
       | I'm sure the appropriate labs are designed to never let the
       | pathogens escape. Sure; when the stakes are this high, backstop
       | it.
        
         | bbfjgktmnrnrn wrote:
         | They were asked about this recently on This Week in Virology,
         | the most important virology podcast.
         | 
         | They said that no scientist wants to work in a remote location,
         | they want to have a city social life. Which is why these labs
         | are typically located in million+ cities.
         | 
         | They also said that this is safe, because no pandemic to date
         | started from a lab, and that eventually it will be proven that
         | this pandemic is zoonotic too.
         | 
         | They also said that they do not understand why a year and a
         | half in people keep on talking about this baseless conspiracy
         | theory.
        
           | feral wrote:
           | > They said that no scientist wants to work in a remote
           | location, they want to have a city social life. Which is why
           | these labs are typically located in million+ cities.
           | 
           | Sounds honest, but selfish given how the most recent pandemic
           | took out the 'city social lives' of hundreds of millions of
           | non-virologists. Hard to understand the cost:benefit there.
           | 
           | > They also said that this is safe, because no pandemic to
           | date started from a lab,
           | 
           | That's got to be the least reassuring safety argument I have
           | ever heard.
           | 
           | >They also said that they do not understand why a year and a
           | half in people keep on talking about this baseless conspiracy
           | theory.
           | 
           | Kills millions directly; massive indirect costs; a year and a
           | half later virologists don't understand that its a problem
           | that we're not certain it didn't come from a lab.
           | 
           | Not an expert, but at these stakes, it makes it sound like
           | there's no adults in charge.
        
             | tzs wrote:
             | > Kills millions directly; massive indirect costs; a year
             | and a half later virologists don't understand that its a
             | problem that we're not certain it didn't come from a lab.
             | 
             | It has only been a year and a half. It typically takes
             | several years or even decades to trace a new virus in
             | humans back to its origin.
        
           | AntiDyatlov wrote:
           | Surely they don't believe the odds of GOF research producing
           | a much more lethal pandemic than the one we're dealing with
           | are 0%. At the same time, nobody ever showed that GOF
           | research has benefits commensurate with the risks.
           | 
           | It would appear the virologists are not trustworthy.
        
         | sampo wrote:
         | > I don't know whether the benefits of GoF research outweighs
         | the risks
         | 
         | It should be obvious now, that all the gain-of-function
         | research done on coronaviruses didn't help at all with this
         | pandemic. Gain-of-function researchers didn't contribute to
         | vaccine development, vaccines were developed by different
         | people.
        
         | [deleted]
        
       | oenetan wrote:
       | https://archive.ph/V0Dfn
        
       | andyxor wrote:
       | It's funny seeing this on WaPo front page. Not long ago
       | mentioning possible artificial source of COVID as a byproduct of
       | gain-of-function research was a "baseless conspiracy theory", and
       | you'd likely be banned for "misinformation" on social media.
        
         | jpeloquin wrote:
         | They need to pivot every so often to keep engagement up. If the
         | facts haven't changed, the spin has to change.
        
         | tzs wrote:
         | Something that later turns out to be true can still be a
         | baseless conspiracy theory if the people that believe it do so
         | for the wrong reasons.
        
           | jasonladuke0311 wrote:
           | What are "the right reasons"?
        
       | andrewl wrote:
       | This is an interesting article. The headline works when you're on
       | the _Washington Post_ site, and you can see the subhead and the
       | image of the SARS-COV-2 virus. But on its own it could mean
       | almost anything. The subhead reads:
       | 
       |  _Controls on 'gain of function' experiments with supercharged
       | pathogens have been undercut despite concerns about lab leaks._
        
       | xpe wrote:
       | See also "The Moral Challenge of Modern Science" [1]
       | 
       | > The notion that science is morally neutral is also widely held
       | and advanced by scientists. Indeed, many scientists wear their
       | neutrality as a badge of honor, presenting themselves as
       | disinterested servants of truth who merely supply society with
       | facts and tools. They leave it up to others to decide how to use
       | them. "Science can only ascertain what is, but not what should
       | be," Albert Einstein said, "and outside of its domain value
       | judgments of all kinds remain necessary."
       | 
       | > ...
       | 
       | > We must therefore judge modern science not only by its material
       | products, but also, and more so, by its intentions and its
       | influence upon the way humanity has come to think. In both these
       | ways, science is far from morally neutral.
       | 
       | [1]: https://www.thenewatlantis.com/publications/the-moral-
       | challe... (2006) by Yuval Levin who was at the time "a senior
       | editor of The New Atlantis and a fellow at the Ethics and Public
       | Policy Center"
        
       | prox wrote:
       | I really think there should be a ban on these gain of function
       | research labs. It's fine to research current strains and
       | potential medications, but that's where the line should be drawn.
        
         | booleandilemma wrote:
         | This may just drive the research underground, making it less
         | regulated, and increasing the chances of some kind of disaster.
        
           | AntiDyatlov wrote:
           | Maybe, maybe not. If the main incentives behind GOF research
           | are wanting to churn out papers, seems like the field would
           | just vanish.
        
           | prox wrote:
           | It's pretty hard to do this stuff, you need a high level
           | biolab, not many exist afaik.
        
             | Vecr wrote:
             | You don't _need_ a high level biolab, a negative pressure
             | tent in your garage and a PAPR respirator would probably
             | work fine. Not exactly super safe, though.
        
       | skybrian wrote:
       | I'm encouraged to see this article. There should be more public
       | attention for efforts to make sure virus research safety
       | protocols are good enough.
       | 
       | It seems likely that investigations into the origin of the
       | pandemic will remain inconclusive, but hopefully safety can be
       | improved anyway.
        
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       (page generated 2021-08-28 23:01 UTC)