[HN Gopher] Time-lapse of a single cell transforming into a sala...
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       Time-lapse of a single cell transforming into a salamander (2019)
        
       Author : smusamashah
       Score  : 851 points
       Date   : 2021-01-25 23:28 UTC (23 hours ago)
        
 (HTM) web link (www.nationalgeographic.com)
 (TXT) w3m dump (www.nationalgeographic.com)
        
       | rthomas6 wrote:
       | This video brings up a crackpot theory I've been toying with. I
       | know it's crazy, but I keep thinking about it.
       | 
       | The Fermi paradox asks, why haven't we found any alien probes?
       | Why have we received no contact or evidence of aliens visiting
       | Earth in the past? Why aren't there galactic-wide civilizations,
       | or super advanced beings that have spread over the entire galaxy?
       | 
       | If there were such a being/civilization, perhaps their planning
       | time horizon would be billions of years, instead of
       | (optimistically) hundreds of years like for humans. With that
       | magnitude of time horizon in mind, what might that civilization's
       | colonization efforts or exploratory probes look like? What would
       | their machines look like, if time was not a concern?
       | 
       | If 4 billion years is nothing to you, and assuming there really
       | isn't a way around the speed of light, maybe sending self-
       | assimilating, self-adapting machine "seeds" to all Earth-like
       | planets is the most efficient way to expand or explore. Seeds
       | that perfectly adapt to the environment they're exposed to, self-
       | replicate, take over the planet, and then the solar system.
       | 
       | Sort of like the Protomolecule from The Expanse, instead of
       | hijacking life, it hijacks raw materials, and was designed on a
       | timescale of beings that think in terms of eons.
        
       | SeanFerree wrote:
       | Amazing!
        
       | ChuckMcM wrote:
       | That sort of thing just amazes me. I get that it is "programmed"
       | by DNA, and I understand programming quite well, but the series
       | of chemical reactions that allow the cells to go from gamete to
       | full thing still fills me with wonder.
        
         | lm28469 wrote:
         | > I understand programming quite well
         | 
         | Software programming or biological programming ?
         | 
         | These things have the same names but they're not really
         | comparable
        
           | ChuckMcM wrote:
           | Well I think of it as the state machines and cellular
           | automata. And yes, how cellular state machines work is
           | clearly different than how a computer state machines work,
           | they have a surprising (to me) lot in common. If you are
           | interested in these comparisons I can recommend two books,
           | one is Feynman's "Lectures on Computation" which discuss
           | computation (and programming) in a very generalized way, and
           | Nick Lane's "The Vital Question" which looks at the origins
           | of life and discusses the evolution of multicellular
           | organisms in a very approachable way.
        
         | geijoenr wrote:
         | Indeed, there are always two parts to it: the software and the
         | machine (the system of chemical structures and interactions
         | inside the cell) , both equally important. We are at the point
         | we can read the software but have a very limited idea on how
         | the machine works.
        
           | holoduke wrote:
           | Mm I would argue that we have a fair understanding on how the
           | hardware works (chemical processes). But we have not clue how
           | things are controlled and how things work together.
        
         | postalrat wrote:
         | Trying to figure out how biology works probably isn't much
         | different than it would be to figure out how an alien
         | spacecraft works.
        
         | p1mrx wrote:
         | It is "programmed" by the recursive feedback loop of evolution.
         | If anything fails to work, the program terminates and something
         | more reliable will take its place.
        
           | WClayFerguson wrote:
           | People also underestimate how easy it is for life to get
           | started by accident. Let's say you need a short segment of
           | DNA to randomly pop into existence, capable of nothing but
           | self-replication. What are the odds?
           | 
           | Here's my best analogy: If you take one mole of "random"
           | Rubik's Cubes (the number of molecules in a glass of water),
           | then search for 'Solved' ones you'll find 512 _are_ magically
           | solved, merely by the power of large numbers. The ways
           | molecules can  'snap together' are similarly 'finite', just
           | like a puzzle.
           | 
           | Now think how many glasses of water are on earth. A
           | replicating molecule would have existed probably on the FIRST
           | DAY earth had cooled enough to form water.
           | 
           | If we knew what the shortest sequence if DNA is that can
           | replicate, we'd be able to mathematically state the
           | probability of it existing in any 'random' length of DNA of
           | that length as 1/(4^N) where N is DNA length (number of AT/GC
           | pairs).
        
             | red75prime wrote:
             | > If we knew what the shortest sequence if DNA is that can
             | replicate
             | 
             | Take it as 200 bases and you won't find another life in the
             | observable universe. Avogadro's number is no match for
             | exponential growth.
        
             | w0de0 wrote:
             | Wouldn't that imply that we'd find independent genesis of
             | replicating molecules frequently even now?
        
               | WClayFerguson wrote:
               | If we found a sequence of DNA on some sample, and another
               | identical sequence in that same sample, we still wouldn't
               | know replication is happening.
               | 
               | However there may be slightly more requirements like the
               | sequence has to be found in an oil film (bubble) up until
               | it can form a skin/membrane, to protect itself, so even
               | if it was happening on earth trillions of times every day
               | no one would be there to discover it, and other life on
               | the planet with a head start (bacteria, etc) would
               | consume it before it made more 'progress' by evolution.
               | 
               | In the early planet there was nothing to "eat up" life as
               | it was starting. Everything was on an equal footing.
        
               | NickSharp wrote:
               | There's strong evidence that all life on this planet can
               | trace back to a single strand of DNA, which evolved
               | exactly once in our billions of years.
               | 
               | For example, if I understand this correctly, a random
               | jumble of DNA as you describe would have a 50/50 chance
               | of twisting to the right or twisting to the left. And yet
               | all life on earth uses DNA that is "right handed"
               | twisting to the right.
        
               | WClayFerguson wrote:
               | The fact that life is right-hand twist DNA probably means
               | left-hand was unsuccessful due to chemistry either in
               | itself or in the environment, because an inversion of a
               | molecule (chirality, twist, etc) means it will behave
               | completely differently chemically. So left-hand twist can
               | exist, but not necessarily in a way that can build
               | life...even if it's able to initially replicate.
        
               | koeng wrote:
               | No. Oxygen screws a lot of things up. Also, RNAses are
               | now everywhere (organisms secrete them all the time,
               | which is why RNAse away is a product), and since the
               | original replicating molecules were likely RNA, pretty
               | much the entire world is toxic now.
        
             | wombatmobile wrote:
             | > People also underestimate how easy it is for life to get
             | started by accident.
             | 
             | That's well known. It is the key driver for the global
             | contraceptives market, which generated revenue of $28,175
             | million in 2015 and is estimated to reach $43,812 million
             | by 2022.
        
             | yamrzou wrote:
             | Going from a short segment of DNA randomly popping into
             | existence, capable of nothing but self-replication to
             | living organisms, carrying a tremendous amount of
             | intelligence, those are two very different things.
             | 
             | To make an analogy, what you describe would be only the
             | electronic chips or the logic gates of a computer. There
             | are a still the CPU, RAM, and the whole software stack from
             | the OS that runs our bodies (and mind you, there is a
             | different one for each species) to the yet unknown
             | abstractions from which human general intelligence emerges.
             | 
             | I think people underestimate how difficult it is for all
             | the above to get started by accident.
        
               | shellfishgene wrote:
               | Once the process is started with simple life evolution
               | just causes complexity as a rule. I think people who
               | can't believe evolution made us from "nothing" have never
               | really tried to understand the time frame in which it
               | happend, which is a really long time.
        
               | WClayFerguson wrote:
               | Humans can't conceive of large timescales nor large
               | numbers. That's why I use my Rubik's Cube example. A
               | single glass of water contains enough molecules that if
               | they were each a random Rubik's cube then there's a
               | mathematical certainty that 512 of them will be perfectly
               | solved (per glass).
               | 
               | For molecules that are a linear chain of only 2 possible
               | items in the chain, it becomes a 'brute force search' of
               | a 'puzzle space' to find a chain that 'does something
               | like computer code', and the earth has the computing
               | power to solve that brute force problem in 30 seconds,
               | not 30 million years.
        
             | interfixus wrote:
             | > _Let 's say you need a short segment of DNA to randomly
             | pop into existence_
             | 
             | But do you? If elements A and B tend to form compound A-B,
             | and compound A-B can attach a further set of A and B,
             | forming B-A-B-A which under certain circumstances will
             | split into A-B and A-B, you have basic reproduction, and
             | perhaps the occasional presence of element C will expedite
             | the process. Game of life. In my [very] layman's view of
             | the world, given a billion years or two, some such
             | infinitely simple process should be enough to get the ball
             | rolling, as long as it can somehow produce an ever so
             | slightly errorprone copy.
        
               | WClayFerguson wrote:
               | That's right. Once you have a replicating strand that's
               | modular (linearly able to glue end-to-end) it can also
               | recombine randomly with other completely different
               | replicators to see if the "offspring" can replicate. We
               | know for a fact major sections of DNA are shared among
               | lots of different organisms, so we know this did happen a
               | lot during evolution.
        
             | koeng wrote:
             | First approximation - 50 base pairs of RNA? (Unless I am
             | reading the supplement wrong)
             | 
             | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3943892/
             | 
             | "The present study describes the directed evolution of
             | replicating RNA enzymes that operate with an exponential
             | growth rate of 0.14 min-1, corresponding to a doubling time
             | of 5 min. Each parental enzyme can give rise to thousands
             | of copies per hour, and each of these copies in turn can do
             | the same, all the while transmitting molecular information
             | across the generations."
        
               | WClayFerguson wrote:
               | Thanks for that link! That's amazing. I had no idea that
               | work had ever been done.
               | 
               | According to my math 10 million moles of random sequence
               | 50-base pair RNA segments would be required to ensure a
               | correct 'Hit' on a replicator, assuming only one of those
               | 50-long sequences can replicate. 4^50=10^30.
               | 10^30/Avogadro=10^7. Assuming each enzyme is the size of
               | a water molecule, that would be about one large swimming
               | pool of water.
        
               | koeng wrote:
               | https://nebiocalculator.neb.com/#!/ssrnaamt 10 million
               | moles of RNA of length 50 turns out to be a large amount
               | of RNA... but then again there was like a billion years
               | for life to develop, all around the world.
        
               | shellfishgene wrote:
               | This makes the assumption that all the RNA molecules of
               | 50 bp length are "clean" chains of nucleotides, without
               | any chemical modifications that break the replication
               | process. This is highly unlikely if the RNA is not
               | produced by existing enzymes, but by more or less random
               | chemical processes.
        
               | WClayFerguson wrote:
               | It's purely the math probabilities I was getting at
               | above. If you take the number of molecules in a large
               | swimming pool, that is the same number of 50-long RNA
               | molecules it would take to statistically cause at least
               | one RNA to accidentally have any specific pattern of
               | length 50.
               | 
               | In actual evolution this number of RNA molecules can be
               | thought of as 'diluted' across the entire oceans, and not
               | magically sitting in single pond.
        
           | abandonliberty wrote:
           | Over 15% of medically confirmed pregnancies end in
           | miscarriage. Typically in a response to a gross chromosomal
           | abnormality.
           | 
           | We are familiar with downs syndrome, 3 rather than the
           | intended 2 copies of chromosome 21, only because it's
           | comparatively viable.
        
             | cmpb wrote:
             | Good point. That seems like a "soft-shutdown" compared to
             | the "hard-shutdown" that I interpreted from the parent
             | post: dying due to being unfit in the environment.
        
           | umvi wrote:
           | Still nothing short of incredible. "the recursive feedback
           | loop of evolution" abstracts a mind boggling amount of
           | complexity. How did such a complex system start? I suppose if
           | we knew, abiogenesis would be a solved problem.
        
             | lovecg wrote:
             | There are some plausible theories, like RNA randomly
             | crystallizing on a suitable surface. Sooner or later a
             | self-copying one just happened to crystallize by chance,
             | and there was no going back. Fun lecture series:
             | https://youtu.be/PqPGOhXoprU
        
             | KineticLensman wrote:
             | > "the recursive feedback loop of evolution" abstracts a
             | mind boggling amount of complexity. How did such a complex
             | system start?
             | 
             | From something much simpler, and which has been iterating
             | for approx 4 billion years.
        
             | shellfishgene wrote:
             | You may like "The Vital Question" by Nick Lane, a book
             | which presents one possible scenario in a quite readable
             | way. Much of it is quite speculative of course, but you get
             | a good idea what the basic principles are.
        
           | brbrodude wrote:
           | The trippy detail for me is that the runtime is time and
           | space, thats what its frictioned against, even matter and its
           | states are determined by it. Evolution sure is a word.. Not
           | sure it captures it tho
        
         | TaupeRanger wrote:
         | Increasingly it's becoming clear that DNA is only a small part
         | of the picture. Cellular electrical dynamics are the forefront
         | of morphogenesis research atm. Look at any recent high profile
         | work out of Michael Levin's lab for an example.
        
           | sriku wrote:
           | Link to talk - https://www.youtube.com/watch?v=HwtOZ_WfMw0 -
           | in which my mind was blown.
        
           | lurquer wrote:
           | During the initial boredom of Covid, I got very interested in
           | Levin's lab's work and morphogenesis in general.
           | 
           | I made a program to implement some of my theories.
           | 
           | You're welcome to try it. cycell2d.com
           | 
           | My pet theory -- morphogenic fields -- is described in their
           | on one of the pages.
           | 
           | (Caveat: I'm neither a biologist nor a 'real' programmer.
           | But, I was able to come up with a system to 'grow' certain
           | animals and found it a fun way to spend the lockdown...
           | almost as much fun as posting 'Covid is a hoax' comments on
           | HackerNews... ahhh... those were the days.)
        
             | dgellow wrote:
             | You should submit your website as its own on HN :)
        
             | plancien wrote:
             | I'm very impressed, this made my day (my month ?). Too bad
             | your site lacks some nice video demos on the front page. To
             | other HN readers, look what I found in it's tutorial :
             | https://www.youtube.com/watch?v=dkvB4nb8PXw
        
           | koeng wrote:
           | Small part of the picture is an exaggeration, IMO. Cellular
           | electrical dynamics matter, but we already know that surface
           | physics matter (see: any mammalian lab with those flat little
           | red bottles). Those dynamics (physical, electrical, chemical)
           | are all derived from genes coded in DNA, and so long as you
           | have the basic ribosomes / mitochondrial structures, you can
           | re-instantiate an entire organism from just the DNA.
        
             | TaupeRanger wrote:
             | DNA is certainly _necessary_ and _integral_ , but not at
             | all sufficient for a full scientific understanding. Just
             | like quantum mechanics is to rocket science. The heavy
             | focus on genetics has hindered our understanding until very
             | recently IMO.
        
               | abandonliberty wrote:
               | Rather than "small part of the picture", you would get
               | less disagreement with something like "beginning of the
               | story."
               | 
               | I doubt many people would agree that computer hardware is
               | a small part of the picture of modern computation.
               | 
               | They're the foundations that everything else is built on,
               | and with.
        
               | koeng wrote:
               | > hindered our understanding until very recently IMO
               | 
               | Any specific examples of how it hindered our
               | understanding? Like maybe some grants or something?
               | Because as a synthetic biologist, I've never seen a heavy
               | emphasis on genetics take away from other causes of
               | cellular dynamics - in fact, exactly the opposite,
               | because genetic engineering has allowed tinkering of
               | those cellular dynamics (for example, cardio tissue
               | surface physics).
               | 
               | I don't know of any serious biologist that (even
               | historically) disregarded the importance of other
               | physical factors in favor of DNA, but I would love to
               | know compelling counter examples.
        
           | fktnktofk wrote:
           | Aren't those electrical field patterns still somehow encoded
           | in the DNA?
        
             | TeMPOraL wrote:
             | They don't need to be.
             | 
             | I'm not sure what the conclusion of biologists is today,
             | but I have a feeling a lot of important mechanisms aren't
             | encoded in the DNA - or, at least, not anymore. The key
             | insight here is that cell reproduction doesn't happen out
             | of nothing, it's always an existing mechanism working on a
             | new mechanism.
             | 
             | The seminal paper of Ken Thompson, "Reflections on Trusting
             | Trust" (1984)[0], demonstrates how you can encode a
             | backdoor in a compiler in such a way that the compiler
             | embeds this backdoor in every program it builds, _and_
             | embeds the backdoor-embedding machinery in every new
             | compiler binary it builds. You can use it to build a
             | "vanilla" compiler and make it backdoor-embedding, even
             | though the source code doesn't have backdoor-embedding
             | instructions in it.
             | 
             | I suspect similar things happen in biology - there is
             | computationally relevant information embedded in the
             | runtime state, that's not explicitly encoded in the DNA -
             | but it carries on, because every new living cell is built
             | by a previous living cell.
             | 
             | --
             | 
             | [0] - https://www.cs.cmu.edu/~rdriley/487/papers/Thompson_1
             | 984_Ref...
        
               | fktnktofk wrote:
               | I get your point and I agree, the DNA runs on hardware,
               | which is why you can't take cat DNA and put it in a
               | salamander cell and expect to get a cat. The resulting
               | cell will just die since the hardware is not compatible
               | with the DNA.
               | 
               | My point was that there is only so much information
               | capacity in the cell if you exclude DNA, surely much less
               | than needed to store electrical fields patterns for a
               | whole embryo.
        
               | [deleted]
        
               | FartyMcFarter wrote:
               | A cell has a lot of atoms, which may store a lot of
               | information?
        
               | fktnktofk wrote:
               | You would see some sort of patterns there, and we don't
               | see such a thing.
               | 
               | Like the difference between a silicon microchip and just
               | a silicon block. Same stuff, bit the microchip one has
               | intricate patterns.
        
               | Robotbeat wrote:
               | But not error corrected like DNA.
        
               | sitkack wrote:
               | https://en.wikipedia.org/wiki/Tuatara
               | 
               | https://asunow.asu.edu/20200806-dragon-dna-sequencing-
               | genome...
               | 
               | https://phys.org/news/2020-08-dinosaur-relative-genome-
               | linke...
               | 
               | I really recommend Anton's segment on the Tuatara,
               | https://www.youtube.com/watch?v=PWywZyzmBDE MindBlown!
        
               | intricatedetail wrote:
               | Can single atom store more information than a bit?
        
               | morlockabove wrote:
               | Each electron present in one of the atom's orbitals is a
               | bit, so yeah.
               | 
               | More realistically, the simplest atom- one proton, one
               | electron- has 3 integer numbers associated with the state
               | of the electron. You need more than a bit to describe the
               | state of that system, so yeah.
        
               | acomjean wrote:
               | DNA is made up of 4 main components (G,C,A and T). Very
               | generally these encode instructions for making proteins.
               | 
               | Those blocks are very small, less than 20 Atoms.
               | 
               | https://en.m.wikipedia.org/wiki/Adenine
               | 
               | They're working on using it for storage. (very slow read
               | write times). Duplicating shouldn't be a problem.
               | 
               | https://en.m.wikipedia.org/wiki/DNA_digital_data_storage
        
               | koeng wrote:
               | Computationally relevant information is _sometimes_
               | embedded in runtime state (for example, yeast prions),
               | but this is very rare. For small bacteria, you can switch
               | out the entire genome with a new genome and have them
               | continue living just fine. For all intents and purposes
               | on an engineering level, everything is /can be encoded in
               | DNA.
        
               | Robotbeat wrote:
               | The issue is you're going to get massive mutations
               | building up in anything that doesn't have the significant
               | error correcting capability of DNA. So while the coding
               | is not direct, it still has to somehow be in DNA so that
               | the trait will be conserved over the generations. Shorter
               | term changes could conceivably be stored in other
               | molecular structures, though. (Think patterns of
               | methylation in epigenetics or even the fringe idea of RNA
               | memory.)
               | 
               | I would suspect really basic things like replication
               | would be stored somehow in DNA (nuclear DNA,
               | mitochondrial DNA, etc) as they must be highly conserved
               | and mutation resistant in order for organisms to survive
               | and reproduce.
        
             | WClayFerguson wrote:
             | DNA is basically digital information. Every rung on the
             | helix ladder is either an AT or GC. Nature found the
             | simplest say to store information in our chemistry set.
             | Couldn't really store any field patterns though.
        
               | Robotbeat wrote:
               | RNA is simpler but doesn't error correct as much like
               | DNA. It's possible the first life forms had only RNA.
        
             | ethbr0 wrote:
             | Everything is deterministic if you're omniscient.
             | 
             | In our more limited experience, certain levels of
             | complexity mean unpredictable outcomes.
             | 
             | As for why-not-DNA, I think about it in terms of "If there
             | were some way that was faster able to adapt organisms than
             | DNA changes, wouldn't most organisms accumulate substantial
             | functionality via that pathway over time?"
        
               | sssilver wrote:
               | > Everything is deterministic if you're omniscient
               | 
               | Is this true, given
               | https://en.wikipedia.org/wiki/Uncertainty_principle ?
        
               | Ixio wrote:
               | I'm of the mind that randomness is only an approximation
               | of complexity, if you're omniscient then randomness
               | doesn't exist and everything is deterministic.
               | 
               | However it seems to me the deterministic vs randomness
               | debate is of the same order as the existence of god(s) :
               | we will never be able to prove or disprove it and we
               | aren't able to make useful predictions out of the
               | information one way or the other so we might as well just
               | agree to disagree and move on.
        
               | [deleted]
        
               | frutiger wrote:
               | It is indeed not true, even omniscient beings can only
               | produce probability distributions.
               | 
               | However it is not clear if quantum effects are relevant
               | at a biomolecular scale. Some experts[1] suggest so but
               | these ideas are considered fringe by the mainstream.
               | 
               | 1. Sir Roger Penrose
        
             | oconnor663 wrote:
             | Speculating for fun based on what scientist people have
             | told me at parties :) I think the idea is that DNA will
             | directly and literally encode things like "the genes for
             | proteins A and B tend to get activated together". But the
             | next thing that happens is that protein B catalyzes some
             | chain of chemical reactions that winds up activating a
             | different gene for protein C. And then maybe protein C
             | causes some sort of mechanical change in the cell, and the
             | resulting mechanical stress triggers the production of
             | protein D in _adjacent_ cells. Mapping the mechanical
             | relationships between cells in an animal with developing
             | bones and muscles gets super complicated. So the question
             | of  "does the DNA encode the relationship between A and D"
             | ends up depending on what you mean by "encode".
        
           | jcims wrote:
           | Not sure if this is included in 'cellular electrical
           | dynamics' but it's still amazing:
           | 
           | Neuronal Signaling and Sodium-Potassium Pump (from PDB-101)
           | 
           | https://www.youtube.com/watch?v=ZKE8qK9UCrU
        
             | navan wrote:
             | This reminded me of a beautiful animation of "Mitochondria:
             | the cell's powerhouse" which I recently watched.
             | 
             | https://www.youtube.com/watch?v=vkYEYjintqU
        
           | abledon wrote:
           | have you read "Spark in the Machine"? Its an attempt to
           | connect bioelectric science with ancient notions of 'chi', it
           | goes over neural crest cells, organization centers for cell
           | growth, and the electrosensitive pericardium cage near the
           | heart.
           | 
           | They definitely didn't get 100% of it right, buts its quite
           | uncanny how the ancient texts were so accurate at predicting
           | certain things that are only becoming evident in morphogensis
           | research.
        
           | ChuckMcM wrote:
           | Excellent reference. Bio papers with electricity in them,
           | that is new for me. This one [1] is currently blowing my mind
           | :-)
           | 
           | [1] https://www.the-scientist.com/features/how-groups-of-
           | cells-c...
        
             | yalok wrote:
             | Totally. And kind of explains why some electrophoresis
             | therapies may be working.
        
           | bigtones wrote:
           | https://en.wikipedia.org/wiki/Bioelectricity
        
       | soheil wrote:
       | I look forward to a future where we will be looking back with
       | nostalgia on these days thinking how bizarre it must have all
       | felt to be living in these times. Perhaps not too dissimilar to
       | how now we look back on the ancients way of thinking about the
       | cosmos before there was any theory of gravity or any
       | understanding of the strong force in nuclear physics.
        
         | shpx wrote:
         | I was thinking the opposite, that I'm glad to be living in the
         | good old days where no one is able to have direct control over
         | that.
        
       | op03 wrote:
       | I am going to guess all those sudden jerks are the build breaking
       | on the latest commit.
        
         | xuhu wrote:
         | It also looks like reboots between bootstrap stages.
        
       | foxyv wrote:
       | It blows my mind that we all start off as a sphere and then fold
       | inside ourselves to make a meat tube. Life is so amazing!
        
         | Balgair wrote:
         | It depends on the species. For instance, most mice will start
         | out as a tube, and then they turn inside out at embryonic day 8
         | (I think, It may be earlier though). Whereas rats, dogs, and
         | humans do not do this. And that's just the mammalian
         | development that has been under a lot of study. What other
         | vertebrates do, well, that takes a bit more funding!
        
       | [deleted]
        
       | sebringj wrote:
       | Here's the direct video:
       | https://pmdvod.nationalgeographic.com/NG_Video/772/995/14428...
        
       | notjes wrote:
       | Humbling.
        
       | f430 wrote:
       | what's striking to me is how similar in early stages it looks
       | like the Flower of Life pattern. Perhaps its possible that our
       | life in the 3D world is essentially geometry on the
       | hyperdimension that somehow trickles down into life. ex) DNA to
       | proteins.
        
         | timr wrote:
         | You're not the first to notice this. The phrase "ontogeny
         | recapitulates phylogeny" was coined to capture this very
         | observation:
         | 
         | https://en.wikipedia.org/wiki/Recapitulation_theory
         | 
         | (unfortunately, the theory wasn't very useful, and is mainly a
         | historical curiosity today.)
        
         | WClayFerguson wrote:
         | I agree. I think our entire 3D universe is really more like a
         | 'projection' (onto lower dimensions) of some vastly larger
         | hyperspace in many more dimensions, so we're always seeing
         | basically only a sliver of true reality, and if we could see it
         | all (all of reality) it would be vastly more complex, but also
         | a lot of things (like this video) would seem more mechanical
         | than magical.
        
           | saltyfamiliar wrote:
           | Completely agree. I think this could also explain the
           | fundamental randomness we perceive at the quantum level.
           | We're simply not seeing/unable to see the full picture.
        
             | WClayFerguson wrote:
             | Yep, most every serious Physicist today agrees, it's more
             | likely we're not "seeing" everything. Slit experiment,
             | Entanglement, etc. prove we're missing lots of the picture.
             | All the particles popping in and out of existence...seems
             | like really they're just 'passing thru' and we only see
             | them a fraction of the time, because most of the time
             | they're in some 'realm' we've only thus far managed to
             | label as "Wave Probability"
        
               | anthk wrote:
               | What if our brains ommited that extra information to
               | survive? Or just a relevant amount?
        
               | f430 wrote:
               | or the even more interesting question is: what if the
               | human consciousness is hyperdimensional (the spiritual
               | theory that the universe itself is conscious and capable
               | of perception) but that through quantum trickery we
               | simply perceive "others" and "me, us, them"?
               | 
               | If entanglement or Einstein's "spooky magic" is possible
               | at the building layers of reality then why do we balk at
               | the idea of this not being possible in other levels of
               | dimension?
               | 
               | Are we like the many "Random Novelty Generators" that is
               | needed for the whole thing to work where each layer of
               | complexity created (in our case our collective human
               | experience consisting of many individual ones) a platform
               | for which additional novelty is generated?
               | 
               | Very interesting ideas to "toy" with. Samsara, karma,
               | reincarnation, Einstein's theory that "God doesn't play
               | dice" all seem strangely possible as our understanding of
               | reality advances. It is weirdly mechanical in its raw
               | form but borderline "pure **ing magic".
               | 
               | (I would also point out how the Western thought rejects
               | all forms of non-objective, impossible-to-prove-
               | therefore-nil ideas in pursuit of its theory that all we
               | see is all we get. We attack all ideas that remotely
               | challenge the religion that has become Science. Seems to
               | be built upon shaky grounds as we seem to slowly approach
               | a convergence of religion, spiritualism, quantum theory
               | especially at a very high elite academic level.
               | Ironically the only people in the scientific community I
               | can have these conversations is also quantum physicists,
               | and some molecular biologists.)
               | 
               | Very nice discussions today I am very satisfied with HN
               | as normally this kind of talk gets the boot and hostile
               | reactions from co-workers.
        
               | WClayFerguson wrote:
               | I agree with what you said. Even the concept of "God"
               | seems like it's been 're-framed' by science lately (in a
               | good way) with many scientists having to admit that a
               | simulation theory is as good as any other theory for our
               | origins, and if we're being simulated then by definition
               | the thing doing the simulating is a "god", by most
               | definitions despite whether it is concerned with human
               | feelings or what we call morality.
               | 
               | HN is definitely a great place to find others who are
               | intellectually curious about these topics. It's a shame
               | that most people (in society at large) would rather
               | discuss sports or entertainment, than the actual
               | interesting scientific or philosophical things that
               | matter more.
        
               | anthk wrote:
               | That's simple. Science says "probe it, or GFTO". Thus,
               | religion and pseudoscience is out today, and for good. We
               | are not children believing on monsters under the bed
               | anymore.
        
             | gus_massa wrote:
             | No, the information in the additional variables would be
             | like a hidden variable theory, but the hidden variables
             | make predictions that disagree with the experiments
             | https://en.wikipedia.org/wiki/Hidden-variable_theory
             | 
             | There are a few physics theories that use additional
             | dimensions, but they are use quantum mechanics.
        
               | namero999 wrote:
               | Interesting. Can you confirm my ELI5 understanding of it?
               | Is it that we could potentially claim that QM is not
               | really random, we simply do not have all the data (like
               | predicting a dice roll without accounting for the
               | roughness of the surface). But then, experimental
               | evidence contradicts this claim. Correct?
        
               | gus_massa wrote:
               | Yes. More details:
               | https://en.wikipedia.org/wiki/Bell%27s_theorem
        
               | [deleted]
        
           | f430 wrote:
           | Language seems to be this, especially alphabet, symbols.
           | "If you have a powerful enough language, you can take control
           | of reality. This is what magical languages, like in the late
           | Renaissance, were about. The only thing which comes close to
           | that today is code for computers. Essentially, these are
           | languages which, when executed, something happens. They are
           | languages of efficacy. They carry, not meaning, but
           | motivation to activity. This Kabbalistic question is very
           | interesting; someone showed me, recently, a sculptural
           | object, which, when illuminated from various angles by a
           | source of light behind it would cast, one after another, each
           | of the Hebrew letters on a screen. In other words, this was a
           | higher-dimensional object which had the entire Hebrew
           | alphabet somehow embedded in it. When I mentioned this to
           | Ralph Abraham, he said, 'Well, all you have to do is digitize
           | and quantify that object, and we'll be able to compute from
           | that three-dimensional object to a 5-, 6-, 7-, 8-, or
           | 9-dimensional object, which would cast all letters of all
           | alphabets into matter.' So one way of thinking of the
           | 'transcendental object at the end of time' is as this kind of
           | Ur-letter or Ur-word in hyperspace, from which, as it sheds
           | the radiance of its syntactical numenosity into lower and
           | lower dimensions, realities as literary functions of being
           | constellate themselves."
           | 
           | There was a Standford professor that studied this extensively
           | and while I don't bu 100% into it, he makes a pretty
           | compelling argument. The 3d molds that he created when held
           | at specific angles and viewed, they certainly resemble
           | letters of the Hebrew Alphabet. In turn, the way he holds
           | them in both hands (arms extended out or twisting) represents
           | specific meaning! In theory this should work with other
           | languages as well but the bottom line, going back to the idea
           | that our language _itself_ is a trickle down effect from the
           | outer workings beyond our current dimension.
           | 
           | All of this should be read with a very open mind however,
           | nonetheless, the original video, the various "sacred"
           | geometries (why are they even sacred to begin with?), inspire
           | thinking that what if languages and symbols representing
           | ideas are simply projections?
           | 
           | > more mechanical than magical.
           | 
           | This. As we learn more and more and our understanding
           | expands, I don't see why not.
           | 
           | (I'm really pleased that we can have this thread on HN)
        
             | vulcan01 wrote:
             | I'm curious, where is this quote from?
        
         | namero999 wrote:
         | If I were to play the hippy mumbo-jumbo part for a moment, I
         | would suggest a trip with Salvia Divinorum to perfectly capture
         | and have a direct perception of what you say in your comment.
        
       | fktnktofk wrote:
       | At around 2:30 you can see some cells moving inside the embryo.
       | What are they doing?
        
         | amelius wrote:
         | Could be blood cells (?)
        
         | basicplus2 wrote:
         | Cell migration occurs at many stages in development and can be
         | interferred and even stopped by ionizing and electromagnetic
         | radiation.
         | 
         | Could not find Reference for the electromagnetic radiation in
         | time to do this reply sorry.
         | 
         | https://embryology.med.unsw.edu.au/embryology/index.php/Deve...
         | 
         | https://www.statpearls.com/ArticleLibrary/viewarticle/20922
         | 
         | https://pubmed.ncbi.nlm.nih.gov/14690282/
         | 
         | This man did a study showing how electromagnetc fields
         | interfere with embryonic cell migration.
         | 
         | https://www.thefreelibrary.com/W.+Ross+Adey%2c+M.D.-a0163395...
        
       | reubens wrote:
       | From 'View From a Height', by Isaac Asimov:
       | 
       | "And just as an organism in the embryonic stages seems to race
       | through the aeons of evolutionary development, from single cell
       | to ultimate complexity, in mere weeks or months; so the
       | individual scientist in the course of their life repeats the
       | history of science and loses themselves, by progressive stages,
       | in the orchard [of science]."
        
       | ctdonath wrote:
       | Where is the bright line between "not a salamander" and
       | "salamander"?
        
         | capnorange wrote:
         | there is no difference between "life" and "no life" :)
        
         | shellfishgene wrote:
         | Further complicated by the fact that the egg develops into a
         | larvae with gills, which then undergoes metamorphosis to become
         | an adult salamander...
        
         | Thorrez wrote:
         | Maybe there is no bright line, maybe it's a salamander the
         | whole time.
        
       | bch wrote:
       | Here's a direct link to the video so you don't have to endure the
       | hostility of their website: https://youtu.be/SEejivHRIbE
        
         | joshspankit wrote:
         | You're very likely getting an upvote from everyone who visited
         | the link and came back here. Thank you.
        
           | SV_BubbleTime wrote:
           | Guilty.
           | 
           | I dealt with the page for as long as I could, scrolled, saw
           | no video and came back here for someone to surely give the
           | direct link. I think someone has trained me, but for what
           | purpose I am not sure.
        
             | a_t48 wrote:
             | The image at the top is actually a video. It fooled me,
             | too.
        
         | lxe wrote:
         | What's wrong with the website?
        
           | edgyquant wrote:
           | It took almost 10 seconds to load on my gigabit connection,
           | then a banner came up over the play button before finally a
           | pop up forcing me to give my email to continue. At that point
           | I X'd out and came here.
        
             | lxe wrote:
             | Wow. I guess uBlock does it's magic for me.
        
             | beefsack wrote:
             | I got none of that and it loaded very quickly, presumably
             | thanks to uBlock.
        
               | guram11 wrote:
               | +1 and with noscript
        
               | usefulcat wrote:
               | I got none of that without uBlock or noscript, thanks to
               | pointing my router to ad-blocking DNS servers.
        
               | gcblkjaidfj wrote:
               | I spent couple days after joining an Ad tech project,
               | because I could not get a working local build.
               | 
               | I had already disabled adblocker at the time, and was
               | even using other browsers. Turned out i also had DNS[0]
               | ad blockers I forgot about.
               | 
               | This story always make me think the kinda of experience
               | we are building for our own families and children online.
               | sigh.
               | 
               | [0] https://someonewhocares.org/
        
           | djrconcepts wrote:
           | no idea what the website was doing in the background, but the
           | fan on my computer started working extra hard
        
         | mixmastamyk wrote:
         | And youtube-dl to avoid the hostility of the Youtube website:
         | youtube-dl https://youtu.be/SEejivHRIbE
        
           | [deleted]
        
         | doctor_eval wrote:
         | I thought it was just me. Thanks!
        
         | dragonsh wrote:
         | Try direct link instead of YouTube. Its also there in comment
         | below.
         | 
         | https://pmdvod.nationalgeographic.com/NG_Video/772/995/14428...
        
         | hn_throwaway_99 wrote:
         | I literally couldn't find the video link at all on the article
         | in mobile. Thank you.
        
           | raws wrote:
           | It's the picture at the top that is the video, took a while
           | for me to load.
        
       | udev wrote:
       | The amount of information required to orchestrate such a process
       | seems incredibly high compared to the amount of data stored in
       | the DNA.
       | 
       | My understanding of Information Theory completely breaks down
       | looking at this. It seems impossible that it works.
       | 
       | I have this feeling that we have not yet developed the theories
       | that would make it possible for us to grasp how this truly works.
        
         | shmageggy wrote:
         | The process is riding on a foundation of chemistry and physics
         | that has a whole lot of intrinsic dynamics. The DNA only has to
         | take a causal role in _modulating_ those existing dynamics. It
         | doesn't have to orchestrate every minuscule interaction, only
         | coordinate things to the extent that the intrinsic dynamics
         | come together to form something with an emergent complexity.
         | It's like calling into a complex library with a line or two of
         | python. Yes, the top level is compact, but only because it's
         | built on top of a base of complexity.
        
           | mclightning wrote:
           | That explained it beautifully.
        
           | Balgair wrote:
           | To add to this: It's like the floating water level valve in a
           | tank. It accurately controls the level of the water in the
           | tank with a very simple mechanism. It does not control where
           | every water molecule goes.
        
           | udev wrote:
           | I think I get what you're trying to say.
           | 
           | But it does not really explain certain phases of this
           | process, in the beginning, where cells are dividing
           | exponentially and suddenly a fold appears, and simultaneously
           | many cells, many being far apart, start behaving differently
           | from other cells just next to them.
           | 
           | So whatever chemistry or physics foundation helps achieve
           | that, it has this capacity to be very selective (these cells
           | far apart do it, but these ones next to them don't), i.e. it
           | is not temperature, acidity/base concentration, pressure, or
           | other basic physics, because these phenomena don't have this
           | kind of selectivity.
        
         | hatsuseno wrote:
         | "The bee, of course, flies anyways. Because bees don't care
         | what humans think is impossible."
        
         | klefon wrote:
         | On the contrary, there is alot of literature on this
         | fascinating subject, many books and papers, TL;DR - as a first
         | approximation:
         | 
         | (1) In asexual reproduction, each successful offspring
         | generates about 1 bit of useful information ("entropy")
         | 
         | (2) In sexual reproduction, each generation of offspring from
         | population n can generate on the order of log(n) bits of
         | information
         | 
         | Ref: Information Theory, Inference and Learning Algorithms by
         | David J. C. MacKay
        
         | f6v wrote:
         | A complex organism uses the DNA to its full potential. For
         | example, some genes are regulated by a large number of
         | enhancers, which results a combinatorial complexity. That is,
         | you don't need a large number of regulators for your system.
         | Instead, there's just a handful, but they're mixed and matched
         | to create thousands of combinations. Alternative splicing and
         | post-translational modifications contribute to complexity as
         | well, as you can create hundreds of thousands of protein
         | variants with relatively few genes. And not to forget that
         | genome is highly dynamic: there're constant rearrangements,
         | which allow producing complex patterns of gene expression.
        
         | gbh444g wrote:
         | Watching the initial stage where this amorphous blob of cells
         | just kept multiplying, made me think that the blob of cells is
         | just that - the bioprinter material. The shape is probably set
         | by the printer, i.e. the parent body, and that blob of cells
         | would never form anything meaningful without the parent. This
         | theory would fall apart, though, if such an organism can be
         | replicated in a lab.
        
         | Strilanc wrote:
         | Have you watched demoscene videos? I think you're
         | overestimating how much information is needed.
        
           | udev wrote:
           | Yes, I watched.
           | 
           | I agree those can be very compact, and looks like a whole
           | world is depicted in 4kb with music!
           | 
           | Demos are based on combining perfect geometrical structures
           | in clever ways (planes, spheres, sinusoids, etc) because they
           | all can be compactly expressed with the type of
           | algebra/arithmetic/geometry that is exactly what our CPUs
           | were built for.
           | 
           | If you watch many demos you tend to see certain symmetries,
           | reflections, and other artifacts that make it all seem
           | repetitive and plain (despite the number of moving objects,
           | effects, etc.)
           | 
           | The process in this cell dividing feels very different to me,
           | but it is hard to put my finger on it.
        
       | kleton wrote:
       | https://pmdvod.nationalgeographic.com/NG_Video/772/995/14428...
        
         | clcuc wrote:
         | Thanks. How did you find this?
        
           | luisramalho wrote:
           | It's the src attribute of the video element:
           | 
           | <video class="vjs-tech" id="aem-lead-video_html5_api"
           | tabindex="-1" preload="auto" muted="muted" poster="https://pm
           | dvod.nationalgeographic.com/NG_Video/772/995/becom..." src="h
           | ttp://pmdvod.nationalgeographic.com/NG_Video/772/995/BECOMI..
           | . itemprop="thumbnailUrl" content="https://pmdvod.nationalgeo
           | graphic.com/NG_Video/772/995/becom... itemprop="name"
           | content="See a salamander grow from a single cell in this
           | incredible time-lapse"><meta itemprop="uploadDate"
           | content="2019-02-14T22:25:17.000Z"></video>
        
             | clcuc wrote:
             | Your link ends in "995-BECOMING_CARDS.mp4", but the parent
             | comment's link ends in "audio_eng_3.mp4".
             | 
             | Where can you find the link that ends in "audio_eng_3.mp4"?
        
       | richardkiss wrote:
       | This entertaining video does a good job of, if not explaining,
       | hinting at the mechanisms that make this possible:
       | https://www.youtube.com/watch?v=ydqReeTV_vk
        
       | amirkdv wrote:
       | The most mind-boggling thing about development IMO is the fact
       | that it works at all, let alone so reliably.
       | 
       | It's a really complex system navigating all these different
       | regimes of stability and instability, with variations caused by
       | internal/external forces, yet coming out almost exactly the same
       | every time.
        
         | f6v wrote:
         | > The most mind-boggling thing about development IMO is the
         | fact that it works at all, let alone so reliably.
         | 
         | That's why so many people don't accept the evolutionary theory.
         | It's just hard to think on evolutionary timescales, there's no
         | difference for most of us between 1 million, 10 million or 1
         | billion years. Nevertheless, it took billions of years for life
         | to evolve.
        
         | gbh444g wrote:
         | The process looks similar to a CNC machine replicating a
         | predefined shape. Except that here the material is able to grow
         | itself. In this case it's not surprising that a CNC machine
         | always creates about the same shape from a rather amorphous
         | material.
        
         | rnestler wrote:
         | > The most mind-boggling thing about development IMO is the
         | fact that it works at all, let alone so reliably.
         | 
         | This sounds to me like engineers talking about a code base :)
        
         | sumedh wrote:
         | > let alone so reliably.
         | 
         | To be fair it sometimes does not work and we end up with
         | deformed babies.
        
       | hughes wrote:
       | Some of the sound effects they chose were a bit much. Pretty sure
       | a cell doesn't sound like anything at all, never mind the sound
       | of lightly splashing water.
       | 
       | I loved watching for the moment the topology of the creature
       | changed from a sphere to a torus. Not exactly sure when it
       | happened, but there was a point where it wrapped itself in half
       | and seemed to fuse.
        
         | NoInkling wrote:
         | You're either talking about formation of the gut tube
         | (gastrulation) or the formation of the neural tube after that
         | (neurulation).
        
           | prawn wrote:
           | For anyone familiar with these things, is their significance
           | that they create tubes which are isolated systems?
        
             | 1auralynn wrote:
             | The neural tube is the predecessor to the spine.
             | Gastrulation isn't really a tube formation more like layers
             | forming, it's the initial differentiation of cells from
             | uniform to specialized.
        
             | Balgair wrote:
             | I'm confused as to your question. What is the 'their' in
             | the second part of your sentence?
             | 
             | Generally, in development, it's the lineage of the cells
             | that matters the most. Skin and neuronal cells have a
             | closer lineage than the gut cells do.
        
         | dgellow wrote:
         | I felt that the audio added a nice atmosphere
        
       | ExcavateGrandMa wrote:
       | thoughts multiply this way, with a map. :D
        
       | bilekas wrote:
       | I don't know why but I have a flashback of the X-Files episode
       | where someone had a salamander arm.. It was something about
       | reversing ageing. :Nostalgia
        
       | rhn_mk1 wrote:
       | An annotated version of this video would be amazing. What's
       | happening at each moment? Where do the movements come from? What
       | is happening when it "closes"?
        
         | shellfishgene wrote:
         | There is of course lot's of descriptions in biology books, this
         | is a nice summary of the basics:
         | https://www.khanacademy.org/science/biology/developmental-bi...
        
       | bertdb wrote:
       | The AI equivalent of this:
       | 
       | Growing Neural Cellular Automata - Differentiable Model of
       | Morphogenesis
       | 
       | https://distill.pub/2020/growing-ca/
        
       | dimastopel wrote:
       | How does each cell know it exact location to decide which
       | specific cell to become (i.e. which part of the dna to read)?
       | Especially at the very early stage?
        
         | shellfishgene wrote:
         | Basically, the mother determines which side of the egg is "up"
         | by adding chemicals to one side. From there on many different
         | gradients of proteins and chemicals form, which pattern embryos
         | into subsections of more and more detail. The graphics in the
         | Drosophila article linked in the sibling will give you a good
         | idea.
        
         | divbzero wrote:
         | This is an excellent question with no easy answer. _Drosophila_
         | is one model organism for which we know something about how
         | expression of specific genes leads to developmental structure
         | [1] but there is a lot still unknown, not just for _Drosophila_
         | but also for cellular differentiation [2] more generally.
         | 
         | [1]: https://en.wikipedia.org/wiki/Drosophila_embryogenesis
         | 
         | [2]: https://en.wikipedia.org/wiki/Cellular_differentiation
        
       | jokethrowaway wrote:
       | This is fantastic.
       | 
       | I can't wait until morality and governments will let us do the
       | same with a human.
        
         | bilekas wrote:
         | https://www.imdb.com/title/tt0751265/
        
       | hanoz wrote:
       | It's just all so... _completely implausible_.
       | 
       | And yet there it is, and what's more the finished product comes
       | fully loaded with all sorts of instinct about the physical world,
       | plus an ability to learn as it goes that our AI can't hold a
       | candle to.
       | 
       |  _And that 's just the Salamander version._ Feed in a different
       | strip of ticker tape and now you're looking at your very self
       | emerge.
       | 
       | It's utterly unnerving to behold.
        
         | hi41 wrote:
         | I am unable to fully explain my birth and existence through
         | evolution alone. I become little aware of the immense beauty
         | and complexity in the natural world and space and feel that
         | there must be God. HN, how have you confronted and answered
         | that question.
        
           | kharak wrote:
           | I get the stellar opposite reaction. One look at evolution,
           | the terror of it, the inhumanity, and I'm convinced there is
           | no higher power. At least none a human being should pray to.
        
           | DNied wrote:
           | A god wouldn't have needed all that complexity to make
           | organisms pop into life. Frankly, God is just the most
           | unintelligent hypothesis.
        
           | ashishmax31 wrote:
           | Read the Blind Watchmaker and then The Selfish Gene. These
           | books should help you understand the science behind life's
           | existence.(For the uninitiated)
        
             | f6v wrote:
             | > These books should help you understand the science behind
             | life's existence
             | 
             | Those can explain how life evolves once it already exists.
             | And there's no argument about that, we know many laws
             | governing those processes, from molecular to population-
             | scale models.
             | 
             | However, nobody was able to show that life can emerge from
             | non-living matter.
        
           | twhb wrote:
           | I believe it's a cornerstone of rational thinking to be able
           | to accept that I don't know something. To, when confronted
           | with something like this, think only "I don't understand
           | that", not "I don't understand that, therefore I'm going to
           | assume my guess about it is right."
        
           | uticus wrote:
           | With you 100% on the totally human reaction. Which
           | interestingly covers awe and perhaps even bordering on
           | worship, if I'm recognizing the reaction - one of the reasons
           | biology is queen of the sciences IMHO. However, is it correct
           | to say that what is being witnessed is evolution? Seems to
           | not match up with evolutionary theory in any of it's current
           | definitions that I'm familiar with.
        
           | f6v wrote:
           | Think of life as a huge legacy system. It's incredibly
           | complex, yet many of the systems are on the brink of
           | exploding. DNA code is a mess: remnants of retroviruses, non-
           | functional pseudogenes, the expression patterns are
           | incredibly hard to understand. If a God was building the life
           | around us, I'd imagine it to be much more tidy. You know, God
           | being all-mighty and all.
        
             | anthk wrote:
             | God is a Perl developer and it used CPAN to build the
             | universe, with duct tape :p.
        
           | jhedwards wrote:
           | What I am reading is: "the [universe] is so large and
           | complex, and I feel that it is beautiful, therefore there
           | must be some entity that created it"
           | 
           | How does that logically follow? To me that is clearly just a
           | projection of the human concept of a "creator", a person who
           | makes things (like a house, a fire, or a website), onto the
           | universe. I see no reason to project my human experiences and
           | ideas onto something as vast as the universe. Whatever is
           | "out there" or "beyond" is by definition something that far
           | exceeds our comprehension, our human concepts. If you want to
           | call that "god", so be it, but I don't see how that's
           | anything more than just a placeholder for something we can't
           | reach.
           | 
           | We can, on the other hand, gradually understand more and more
           | of the laws and properties of the universe itself, and how
           | those work together to create the phenomena we find in the
           | universe. All those gaps in the subset of phenomena that we
           | can observe, I am confident that we are at least
           | theoretically capable of understanding.
        
             | cicero wrote:
             | Humans understand these things because they are persons.
             | Where did their personhood come from if not another person?
             | How personhood can arise out of non-personhood is
             | unexplained.
        
               | thisisbrians wrote:
               | "Personhood" seems a very arbitrary (and not at all
               | clearly defined) qualification here. "Understanding"
               | arises from thinking, not from "personhood". And surely,
               | there are non-person minds that understand less complex
               | things. That they can evolve to achieve person-caliber
               | capabilities incrementally and over long periods of time
               | is well-accepted.
               | 
               | As an aside, we can't communicate very well with the
               | smartest animals, so we don't know how much they can
               | understand. It could be more than most of us think.
        
               | notSupplied wrote:
               | Actually, that's pretty much what Douglas Hofstadter has
               | been trying to explain in GEB and I am a Strange Loop.
        
           | mattmanser wrote:
           | Read more science books and then you can fully explain it!
           | 
           | One of the best arguments that there is no God is exactly
           | that beauty and complexity. It's only complex in a certain
           | type of way, an evolutionary type of way.
           | 
           | No animal has jet boots, or fusion power, or laser beam eyes,
           | or the billions of really useful, but impossible/really,
           | really hard to evolve features. There's no design. There's no
           | plan. There's only evolution baby!
           | 
           | You'll have to make do with some generalizations though,
           | trying to go into the detail of every single thing is
           | probably beyond what can be read in a single human's life
           | time now.
           | 
           | Bill Bryson's A Short History of Nearly Everything is pretty
           | good start, or Unweaving the Rainbow by Richard Dawkins,
           | which is a book about how science makes nature even more
           | beautiful by explaining it, not less.
        
             | brink wrote:
             | You're operating off of the false assumption that evolution
             | contradicts the existence of a God.
        
               | ashishmax31 wrote:
               | Yes, but we already know about the rules which govern
               | evolution, its the laws of physics.
        
               | f6v wrote:
               | If we start from a primitive prokaryote, we pretty much
               | nailed it. However, there's no experimentally verified
               | theory of going from organic molecules to life.
        
               | brink wrote:
               | We have no idea where those come from either.
        
               | anthk wrote:
               | No, you have no idea if god exists to begin with. Thus,
               | leave the phantasies out and stick to the real things we
               | are proving _today_.
        
               | [deleted]
        
               | tim333 wrote:
               | Nah I think I've sussed it.
        
               | spacemark wrote:
               | It doesn't contradict all gods, but it does explicitly
               | contradict most gods, or at least what most in the
               | western world mean when they say "God."
        
               | f6v wrote:
               | To play the devil's advocate, suppose we show that
               | organic life can spontaneously emerge from basic building
               | blocks under certain conditions. Even then, there's a
               | chance that those conditions were not present on Earth
               | when life appeared here. It might be the case that a God
               | had to artificially create them. And the first life was
               | here billions of years ago, chances are we can't ever be
               | sure.
        
               | brink wrote:
               | I'm Christian, and I believe in evolution, the big bang,
               | old earth.. They're not contradictory. There are actually
               | a lot of Christians who believe in those things. CS Lewis
               | believed in an old earth while also believing in God.
               | 
               | I usually try avoid religious debates on HN though.
        
               | spacemark wrote:
               | Belief has nothing to do with forming and testing
               | hypotheses. You don't "believe" in evolution or the big
               | bang or an old earth. Scientific inquiry 101.
               | 
               | And sure, I get your overall point. I was Christian until
               | age 26. I worked two years as a missionary in a foreign
               | country, 90hr weeks, no pay, for my Christian beliefs.
               | What "God" meant to everyone I encountered throughout
               | that time, before, and after, is/was always a bit
               | different. Ultimately we create our own personal God, and
               | what that means can be compatible with honest and
               | rigorous scientific inquiry. But you have to throw out
               | large portions of the bible and accept that it's largely
               | a work of art and useful fiction, and I will place $1000
               | down on a bet that the vast majority of "Christians"
               | would bristle at such ideas.
               | 
               | But yeah, best to stay away from discussions of religion
               | with anyone except your closest friends. Even then it's
               | usually ill advised unless you have hours to sift through
               | the nuance and are very good communicators.
        
               | tim333 wrote:
               | Depends how you define your "Christians." Wikipedia
               | mentions 53.6% of Brits as Christian but as Brit I think
               | I can safely say most of those don't take the bible
               | seriously. Or Christ for that matter.
        
             | mooseburger wrote:
             | Interestingly, no, it isn't fully explained as of today.
             | Schopenhauer's quote of "Any foolish boy can stamp on a
             | beetle, but all the professors in the world cannot make a
             | beetle" is still true today.
             | 
             | No, starting from beetle eggs does not count. They point is
             | no one knows how to start from the inert chemicals that
             | make up a beetle and cause them to assemble into a living
             | beetle. More generally, abiogenesis has not been cracked.
        
           | rthomas6 wrote:
           | I haven't. I think people are too afraid to say "I don't
           | know".
           | 
           | But man, our universe sure is weird. On a fundamental level.
           | I think people under-model just how strange our universe is.
           | Even things like Pi. Why does Pi equal Pi? What an unlikely
           | number to define something fundamental about the universe
           | itself. Or take the logistic map [0]. I mean, what? Why is
           | our universe this way? Or Euler's Identity (e^(pi*i) = -1).
           | Why e? Why pi? I get that the math works, why does the
           | universe need _those_ values for the math to work?
           | 
           | [0]: https://en.wikipedia.org/wiki/Logistic_map
        
             | anthk wrote:
             | >I think people under-model just how strange our universe
             | is. Even things like Pi. Why does Pi equal Pi?
             | 
             | Pi is just the ratio between the diameter and all the
             | points to the same distance from another point, in base 10.
             | 
             | As simple as it gets. Circle = infinite points, thus Pi =
             | infinite decimals.
             | 
             | There's no magic.
        
           | ikurei wrote:
           | My 2 cents:
           | 
           | I've read some books on evolution, many about philosophy and
           | religion, and I find it all fascinating, but I didn't
           | completely escape that feeling that it's not enough...
           | 
           | But, instead of saying "these explanations aren't satisfying,
           | there must be a god behind these misteries", my position is
           | "these beautiful explanations aren't completely satisfying,
           | I'm left with some uncomfortable questions, and that's just
           | part of being a human being".
           | 
           | I've been a devout catholic, I've been a kinda-skeptical non-
           | denominational christian, I've been a staunch atheist and a
           | buddhist-leaning agnostic... and I've never felt that I could
           | find perfect answers. Some uncomfortable questioning will
           | always be there, and it's better to try to make your peace
           | with it before trying to solve it.
           | 
           | Trying to solve it is also fine, but not the complete answer.
        
             | anthk wrote:
             | The best answer is "we don't know until we do", so the best
             | thing to do is to throw out any pseudoscience (name it god,
             | budda, UFO's, chemtrails or the Bigfoot) to the trash until
             | there's enough scientifical proof of it.
             | 
             | Everything else is babblery and charlatanery.
        
           | smusamashah wrote:
           | Bringing in a 'creator' makes it recursive. Who created God
           | then. It never ends. God is definitely not the correct answer
           | to all that exists.
        
         | wombatmobile wrote:
         | > And that's just the Salamander version. Feed in a different
         | strip of ticker tape and now you're looking at your very self
         | emerge.
         | 
         | You may think humans are more amazing than salamanders, but no
         | other species agrees with you.
        
           | uticus wrote:
           | Perhaps I misunderstood the thrust of your point, in which
           | case I hope you'll correct me. It seems you're saying
           | basically all species are equal, not in all being created,
           | but in all being alike. If I'm close to target, and if the
           | basic salamander could talk ontology, I posit they would
           | disagree with you... not by saying "salamanders are dull,
           | humans are exciting", but by saying "we are both created we
           | know not from where, and go to we know not where - but you
           | humans show evidence of caring about this, unlike us
           | salamanders." The very existence of a salamander - let alone
           | seeing it form and grow - says very clearly a few points,
           | especially that humans are amazed by these things (look at
           | the comments!) wherease salamanders are not amazed but merely
           | (although still gloriously) amazing. In which case an
           | argument that humans aren't special (and therefore have a
           | greater burden of responsibility and joy) seems to fall wide
           | of the mark.
        
           | ASalazarMX wrote:
           | Dogs do, that's what humans selectively bred them for.
        
             | SV_BubbleTime wrote:
             | Hey wolf... come here, don't bite me... guess what we're
             | going to turn you into!!
        
           | gorgoiler wrote:
           | There's a footprint on the moon that begs to differ.
        
           | steve_adams_86 wrote:
           | I hear you, but it seems neat that our ticker tape yields a
           | meat bag that likes to send rockets to other hunks of rock in
           | a giant cold vacuum (for example). Salamanders on a cosmic
           | scale are probably difficult to distinguish from humans -
           | just more bundles of cellular automata that share more in
           | common than they don't, but the differences are fascinating
           | from an earthly/human perspective.
           | 
           | I really wonder, too - does a dog care as much about a
           | salamander as a human? How about a crow? Do crows think we're
           | interesting at all? It's impossible to say.
           | 
           | Ultimately you're right though, we're just creatures trying
           | to survive in various ways. Humans have very sophisticated
           | ways of doing it, but they aren't inherently more amazing
           | outside of the human lens.
        
             | patcon wrote:
             | > I hear you, but it seems neat that our ticker tape yields
             | a meat bag that likes to send rockets to other hunks of
             | rock in a giant cold vacuum (for example).
             | 
             | I'd suggest as individuals of our species, we're not much
             | more interesting than ribosomes -- one could say that
             | ribosomes execute all the stuff in the salamander video
             | (hey, they print the DNA into proteins).
             | 
             | Humans are maybe just biological machinery in the organism
             | of culture, like ribosomes are the molecular machinery in
             | the organism of biology. Culture does all those amazing
             | things, and humans just skim along the unfathomably long
             | and multi-dimensional ticker tape of language/culture :)
             | 
             | Just my 2c, of course, and the way I stay humble about
             | humanity
        
               | hoseja wrote:
               | Are you OK with the seemingly inexorable march toward
               | human eusociality and reduction to meme-substrate?
        
               | abandonliberty wrote:
               | I get the desire to stay humble. This feels like
               | splitting hairs though.
               | 
               | You would say it's not humans, but human culture that is
               | causing global extinction event?
               | 
               | Well, okay.
               | 
               | In any case, you may find the book 'Sapiens' interesting.
               | It argues that the fundamental change that caused sapiens
               | to dominate all other life is our ability to abstract and
               | conceptualize.
        
               | wombatmobile wrote:
               | > the fundamental change that caused sapiens to dominate
               | all other life
               | 
               | Are you sure that has happened?
               | 
               | Do humans dominate insects, fungi, and bacteria?
               | 
               | Do humans dominate the biomass of Earth?
               | 
               | If you limited the scope of your remark to mammals, fish,
               | reptile and birds, I would understand what you are
               | saying. Humans have excelled at habitat destruction.
               | Still, I would point out that the "domination" of which
               | you speak is less than 300 years in duration, with no
               | certainty to last beyond 500 years.
        
             | nor-and-or-not wrote:
             | > Humans have very sophisticated ways of doing it
             | 
             | Which yet has to be proven they are really working in the
             | long way, because we are still on trial. Also let's see if
             | we can retain our humanity whilst surviving as a species.
        
               | hypertele-Xii wrote:
               | When are we _not_ on trial? Does there ever come a time
               | when humanity can consider itself, for all intents and
               | purposes, _safe?_
        
             | wombatmobile wrote:
             | > I hear you, but...
             | 
             | I understand what you are feeling when you contemplate the
             | wonder of humankind's technological achievements, which, by
             | some measures, necessarily narrow, far surpass the
             | capabilities of any other species. It's worth reflecting on
             | this feeling, which comes reflexively to anyone who is
             | presented with the intellectual challenge that you answered
             | with your complete response above.
             | 
             | When Darwin first published his theory of evolution, he got
             | a lot of pushback from people because of this exact
             | feeling.
             | 
             | 19th century British humans resented being "relegated" to
             | the relations of apes. They scorned Darwin for saying it.
             | 
             | Why?
        
               | Teever wrote:
               | Because a human published the On the Origin of Species
               | not another species of ape.
        
               | steve_adams_86 wrote:
               | I don't mean to say I'm not satisfied with being a
               | hairless ape - I simply am what I am. But as much as I
               | marvel at other species and even envy their abilities, I
               | appreciate our own unique abilities as well. And of
               | course, reflexively marvelling at human achievement is
               | worth reflecting on. I do that quite a bit.
               | 
               | I personally think humans are largely pro-social, and
               | this reflex is partially an extension of the human
               | tendency to innately cheer for humanity. It seems
               | literally in our nature to promote ourselves in this way.
               | 
               | At the end of the day, I'm largely vegetarian (I eat some
               | fish) because rationally I know that I can't really
               | differentiate my human experience from that of a cow or
               | chicken, and I'd rather not risk that killing and eating
               | a cow would be no different from a cow killing and eating
               | me. Space exploration isn't enough for me to justify
               | killing an animal that's ultimately not much different
               | from me.
               | 
               | Perhaps somehow we could learn that that's ridiculous and
               | all animals are basically robots and humans are the only
               | conscience on the universe. Until then I'd rather assume
               | some cow out there is wondering about humans and
               | wondering why we aren't as clever as they are.
        
               | wombatmobile wrote:
               | How do you feel when non-humans wantonly kill humans?
               | 
               | Just wondering ;-)
        
               | steve_adams_86 wrote:
               | I'm honestly not sure. The world appears to contain life
               | which feeds on life, so on some level it's entirely
               | necessary in order for life to continue as we know it. I
               | know that I can make a choice to feed on life (or at
               | least life like my own) less but I have no way of knowing
               | that about anything else.
               | 
               | My intuition is that most animals can't or don't
               | distinguish much in what life they feed on and so if they
               | eat humans, it's simply according to nature and not
               | problematic in the least.
        
               | wombatmobile wrote:
               | > My intuition is that most animals can't or don't
               | distinguish much in what life they feed on and so if they
               | eat humans, it's simply according to nature and not
               | problematic in the least.
               | 
               | I agree with the second part of your statement, and also
               | much of the first part, sort of... but what I'm about to
               | write may at first glance sound like a snarky gotcha.
               | That's not my intention at all. It is an informed,
               | educated view, and I don't like it any more than you
               | might, because it bursts an illusion, at least for now.
               | 
               | Firstly, I think animals can distinguish what they eat in
               | a very sophisticated way. At least as sophisticated as
               | humans. Animals, after all, feed themselves with their
               | own energy, guile and knowledge. They don't rely on
               | supermarkets like many humans do, so they know exactly
               | what is going on.
               | 
               | I am mostly vegan, because I prefer vegan food. When I
               | eat animals on occasion, I do it in the same spirit you
               | described in your consideration of animals who kill
               | humans and other animals for food. It is part of nature,
               | and I can embrace that.
               | 
               | You also said this is "a choice". Ethically, morally,
               | spiritually, and out of shared interest, I can agree with
               | you. However, I learned something recently from a radio
               | show that followed a group of people who set up on virgin
               | land, trying to be self-sufficient. What they found is
               | important for our discussion.
               | 
               | It isn't possible for everyone who wants to live self-
               | sufficiently to grow enough protein to survive. The soil
               | in most places, and the climate won't support it. In
               | order to live as a pure vegan, we need supermarkets and
               | globalism, or at the very least, food transit on a global
               | scale. Those giant South American soy plantations are
               | built on destroyed forest habitat. :-(
               | 
               | The people in the radio documentary had to grow animals
               | in order to obtain protein to survive. When they ate
               | those animals, they did it with profound respect and
               | understanding for the value of life, having raised the
               | animals themselves. I've heard conventional farmers speak
               | this way about animal lives too. It's something I think
               | we need to understand and come to grips with
               | intellectually, because the pure choice some people have
               | of going vegan, is not a choice for everyone on the
               | planet, at least, not with current technology and
               | environmental constraints.
        
               | amelius wrote:
               | The self is merely an illusion. On a different level you
               | _are_ that cow, and that chicken too.
        
         | bmitc wrote:
         | I agree, this is just insane and a reminder that we're just
         | banging with sticks. I've seen more believable stuff in sci-fi
         | movies.
        
         | lm28469 wrote:
         | > plus an ability to learn as it goes that our AI can't hold a
         | candle to.
         | 
         | 4.5B years of evolution vs silicon monkeys pretending to be
         | gods
        
           | spyder wrote:
           | Also running the 'computation' / exploration on the scale of
           | the Universe vs. a few thousand metal boxes.
        
             | matt-attack wrote:
             | Right so the idea being, whoever is pondering where they
             | came from, by definition is already that 1 in a gazillion
             | node in the compute cluster that actually arrived at a
             | viable solution. Is that what you're getting at?
        
       | lai-yin wrote:
       | Worth the six minutes. Life begins at the first cell.
        
         | dublinben wrote:
         | Was it not alive before?
        
         | jhatemyjob wrote:
         | I agree. I think you should be able to kill it when it's still
         | a sphere
        
           | Thorrez wrote:
           | I'm not sure what you're saying. That sphere _is_ the first
           | cell I believe.
        
       | seddin wrote:
       | Its like a self extracting zip file
        
       | pvaldes wrote:
       | And then it grows and turns into this steel blue newt:
       | 
       | https://en.wikipedia.org/wiki/Alpine_newt#/media/File:Uhandr...
        
         | amelius wrote:
         | I'd like to see a video of the hands and feet forming.
        
       | [deleted]
        
       | smiley1437 wrote:
       | Has anyone calculated how much energy\entropy is expended to
       | evolve a functioning genome?
       | 
       | My math is far too weak to even know where to start.
       | 
       | It may give a better sense of how much is lost when a species
       | goes extinct.
        
         | lisper wrote:
         | Energy and entropy are not really the right metric here. The
         | thing that is lost when a species goes extinct is _information_
         | , and specifically, information that has been acquired by a
         | process of parallel search that has been going on for literally
         | a few billion years, so the odds of reproducing that
         | information once it is lost is effectively zero. Imagine
         | working on a term paper for a few billion years and then having
         | your computer crash and not having a backup. That's what
         | happens when a species goes extinct.
        
           | edmundsauto wrote:
           | Would there be a way to use "information entropy" as the
           | measurement? Late in the day so I'm struggling to finish my
           | thoughts, but putting this here in case you can connect the
           | dots.
           | https://en.wikipedia.org/wiki/Entropy_(information_theory)
        
             | lisper wrote:
             | Yes, but it's tricky for two reasons. First, we don't
             | really know how to quantify the relative value of two
             | different species. It's kind of like trying to quantify the
             | value of a book. Losing a volume of Aristotle's Poetics is
             | probably worse than losing a Harlequin romance. And second,
             | the information is not just resident in the genome. We can
             | quantify how many bits of information is contained in DNA,
             | but just knowing the complete gene sequence of a salamander
             | is not enough to be able to make a salamander. You need to
             | embed those genes in the right environment, and we have no
             | idea how to quantify the information needed to describe
             | that. So actually putting a number on it is hopeless. The
             | best you can do is look at the effort it would take to
             | reproduce that information once it's lost, which is
             | essentially infinite.
        
               | acomjean wrote:
               | They can use genetics to make aproximate evolutionary
               | trees since different species share a lot of common
               | genetics.
               | 
               | https://en.m.wikipedia.org/wiki/Phylogenetic_tree
               | 
               | That being said changes are very slow and extinction is
               | pretty tragic.
        
               | smiley1437 wrote:
               | Thank you, you are thinking much clearer than I
               | 
               | And when you put it like that, it's particularly
               | upsetting that we lose up to 150 species a day
        
           | Geeflow wrote:
           | To extend on your analogy a bit: Imagine working on that term
           | paper on GitHub and then having your repo deleted. The odds
           | of reproducing that information completely is zero. But there
           | might still be some forks (related species) around. So it's
           | pretty hard to wipe out everything.
        
           | abecedarius wrote:
           | More on information and evolution in chapter 19 of MacKay,
           | http://www.inference.org.uk/mackay/itila/book.html
        
       | beyondcompute wrote:
       | This somehow almost feels me with awe even thought I am somewhat
       | a cynical person. It's another level of demonstrating how
       | intricate life is, how powerful evolution can be and how
       | incredibly well-tuned our (Earth) environment for these sorts of
       | things (which seems to be in stark contrast with what we see
       | elsewhere).
        
       | abyrvalgg wrote:
       | Despite the fact that the video is scientific you realy start to
       | think about God. Who else could invent this? Amazing.
        
         | jl6 wrote:
         | The magic ingredient is time. This is the result of billions of
         | years of iteration, trying quadrillions of quadrillions of
         | different approaches, parallelised across a whole planet, with
         | every generation being built only from a successful previous
         | generation. The result is amazing, but the scale of all this
         | compounding is also amazing.
        
         | pbrw wrote:
         | "If we went to Mars and found there a computer, we wouldn't
         | ever say that it popped up by accident. There had to be some
         | creator of it. On the other hand, we have brains, which are
         | much more complex than computers and we deny the existence of
         | some creator."
         | 
         | I heard this anecdote during homily in church and honestly it
         | perfectly describes how I think about God.
        
           | anthk wrote:
           | Again, that's not the valid answer. Who created God then?
           | 
           | Stop using God as a placeholder and be more humble.
           | 
           | The correct answer is "we don't know", but for sure today God
           | is not a valid theory. No more than Spiderman, Batman or
           | cosmic magical people from Andromeda.
        
         | anthk wrote:
         | Who invented God then?
        
       | vinhboy wrote:
       | That yellow goo we see from the beginning. Is it just a mix of
       | the same thing, or is it a bunch of different things that we
       | can't see with the naked eye? And if it's a bunch of different
       | things, why is it yellow?
       | 
       | Like, why does it look so simple, like a ball of playdough, when
       | it works more like a very complex machine...
        
         | koverda wrote:
         | I believe that is a fertilized egg cell, so kinda both. It's
         | the yolk (all one thing), plus a bunch of associated organelles
         | (bunch of different things).
        
       | anthk wrote:
       | What are we? Matter, or the information exchange between matter?
        
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