[HN Gopher] Moderna vaccine appears to work against variants
       ___________________________________________________________________
        
       Moderna vaccine appears to work against variants
        
       Author : pseudolus
       Score  : 191 points
       Date   : 2021-01-25 15:13 UTC (7 hours ago)
        
 (HTM) web link (www.bbc.co.uk)
 (TXT) w3m dump (www.bbc.co.uk)
        
       | r00fus wrote:
       | I don't see any identification of the variants successfully
       | defeated in this article.
       | 
       | For example the E484K variant identified in Brazil that is
       | supposed to be antibody resistant is quite terrifying.
        
         | slumdev wrote:
         | No reason to be afraid of new strains. Coronaviruses become
         | less deadly as they evolve to become better at spreading.
        
           | brianbreslin wrote:
           | That's a mixed bag, as on one hand sure the number of dead
           | goes down per 100, but then the number of folks infected goes
           | up, thereby meaning the same number of dead possibly, or more
           | people infected in hospitals.
        
             | slumdev wrote:
             | SARS-CoV-2, by best estimates (0.3% mortality), is roughly
             | 3x as deadly as the seasonal flu.
             | 
             | The common cold is a coronavirus. It is significantly less
             | deadly than the seasonal flu. We have every reason to
             | believe that a more contagious but less deadly version will
             | resemble the common cold.
        
               | alicorn wrote:
               | Common cold is caused by a variety of viruses, only a
               | small subset of which is coronaviruses. Look it up.
        
               | thehappypm wrote:
               | The mortality rate is higher than .3%.
               | 
               | .3% of New York City has already died.
               | 
               | Unless the vast majority of New Yorkers have already
               | contracted the virus, the mortality rate has to be
               | substantially higher than .3%.
        
               | tsimionescu wrote:
               | SARS1 was also a coronavirus, and it had more than 50%
               | mortality for those infected. The virus strain tells you
               | nothing about its mortality.
               | 
               | SARS-CoV-2 is also only ~3x as deadly as the flu WITH
               | UNPRECEDENTED MEASURES TO CONTAIN IT. In areas where it
               | wasn't contain, such as the initial outbreak in Italy
               | that overwhelmed hospitals, it was 10x or more as deadly
               | as the flu.
        
             | paganel wrote:
             | At some point the virus will run out of people to infect.
        
               | lazide wrote:
               | Influenza certainly hasn't. It will mutate past defenses,
               | and survive, just as seasonal coronaviruses have - unless
               | a concerted effort occurs to completely eradicate it, and
               | that effort is successful.
        
               | sjg007 wrote:
               | It actually will just continue to mutate and start
               | reinfecting people as immunity wanes.
        
           | wittyreference wrote:
           | Viruses are believed to become less deadly over time when
           | being less deadly offers an evolutionary advantage in ability
           | to _spread_. If being more deadly and more spreadable have
           | the same mechanism (e.g., avoiding spike protein-inhibiting
           | antibodies), you can expect that old adage not to hold true
           | over the short-term.
        
             | foobiekr wrote:
             | I think this is kind of not representing the reality.
             | _Some_ viruses _have become_ less deadly over time. Not all
             | viruses go through this process and the selection pressure
             | that promotes this kind of evolution is _death._
             | 
             | So we have no reason to believe this will occur with
             | covid19.
        
               | waterhouse wrote:
               | > the selection pressure that promotes this kind of
               | evolution is _death._
               | 
               | Not necessarily. Assume that people try to self-
               | quarantine as soon as they notice symptoms. (They don't
               | need to be 100% effective at this.) Consider "mutations
               | that affect how quickly it spreads within your body".
               | Those that increase said efficiency would presumably
               | increase the likelihood of death; but they would also
               | probably shorten the "asymptomatic spreading" period,
               | which means they'd get selected against; this selection
               | happens even among those that aren't dying.
               | 
               | (Author background disclaimer: No biology beyond 9th
               | grade.)
        
             | slumdev wrote:
             | If anything, this is an argument against lockdowns and
             | masking. Letting asymptomatic and barely-symptomatic people
             | spread more-contagious but less-deadly strains would evolve
             | the virus into a minor nuisance in short order.
        
               | lazide wrote:
               | No it won't - it increases the chances for mutations and
               | variants to form, randomly, increasing the odds that one
               | of them will be more deadly AND more infectious.
        
               | tsimionescu wrote:
               | That is wildly wrong. As long as the virus is spreading,
               | there are no evolutionary pressures on it to become less
               | deadly.
        
           | CyanLite2 wrote:
           | UK's Pandemic Team says the new strain appears to be more
           | deadly. https://www.webmd.com/lung/news/20210125/uk-variant-
           | may-be-m...
        
           | lazide wrote:
           | That is a dangerous misunderstanding of evolutionary pressure
           | in viruses.
           | 
           | LONG TERM, less deadly viruses will tend to spread better
           | because the more deadly a virus is, the more it raises stakes
           | for the host population to remove it or prevent it , and the
           | more it can make it apparent who has been infected. Ebola for
           | instance justifies pretty almost any action you can imagine
           | to contain it's spread, where we are still arguing if
           | lockdowns or travel restrictions are the cost appropriate
           | measure with COVID.
           | 
           | If the time of fatality is sufficiently delayed, or the time
           | to implement other countermeasures or recognize the situation
           | has changed is too long, it doesn't help anyone in the short,
           | medium, or potentially even long term - you can have massive
           | fatalities and huge spread.
           | 
           | The 1918 pandemic had multiple waves, with the second in
           | particular having a much higher fatality rate than the first
           | - 10x a typical flu season, which is what we're seeing now.
           | This was almost certainly caused by variants, though lack of
           | data makes it impossible to prove.
           | [https://en.wikipedia.org/wiki/Spanish_flu]
           | 
           | A particularly nasty example [https://www.adn.com/alaska-
           | news/science/2020/03/22/how-an-al...]
           | 
           | The more infections, the more likely we'll get more variants,
           | and the more likely we'll get some that cause terrible,
           | terrible problems - and may still be quite infectious.
           | 
           | Long term, will the most terrible ones die out? Very likely.
           | However, smallpox was a scourage on humanity since likely 300
           | BCE and up until eradication by a massive global effort in
           | 1975, it still had fatality rates around 25-35%. So don't
           | just assume COVID will 'evolve to harmlessness', or if it
           | does that it would happen on a timeframe convenient for
           | society [https://www.cdc.gov/smallpox/history/history.html]
        
             | slumdev wrote:
             | Trench warfare is responsible for evolving a deadly 1918
             | Spanish Flu virus.
             | 
             | Soldiers with minor symptoms remained where they were, not
             | coming in contact with many other people.
             | 
             | The very sickest soldiers were transported by train, where
             | the infected many other people, to hospitals, where they
             | continued infecting many other people. It was our own
             | attempts to care for the soldiers that caused the deadliest
             | strains to spread and continue evolving.
        
               | lazide wrote:
               | Those conditions allowed more infections to happen, and
               | eventually one of them was more deadly. ANY situation
               | that results in more infections will result in more
               | mutations (as it is a property of the viral replication
               | mechanism), and increase the odds that one of them will
               | be more successful in infecting and spreading - with the
               | possible side effect of host death.
               | 
               | What some folks are proposing in this thread
               | (uncontrolled community spread so it will 'mellow out')
               | is an even more massive expansion of that due to the
               | quite visible ability for COVID to be infectious in
               | patients with no symptoms for long periods of time, which
               | Influenza has not been able to pull off.
        
           | anonuser123456 wrote:
           | A virus _may_ become less deadly. There is no guarantee. It
           | depends on what evolutionary options are available and what
           | pressures are selecting mutations.
           | 
           | Pre-symptomatic infectiousness has about the same selection
           | pressure as low mortality rate IMO. Low risk viruses
           | circulate well because people don't care about transmission
           | very much. High risk infections cause people to take
           | precaution and thus eliminates those stains. SARS-COV-1 and
           | MERS were that way.
           | 
           | But pre-symptomatic infectiousness (SARS-COV-2) makes this
           | calculus immaterial for most people; they transmit it without
           | knowledge. This reduces the pressure on high mortality /
           | morbidity strains / variants.
        
           | tsimionescu wrote:
           | A strain that spreads more while not being significantly less
           | deadly is much scarier than a more deadly strain that spreads
           | less. Do the math if you don't believe me.
        
         | adventured wrote:
         | The headline is slightly misleading if only because it's so
         | vague, which is why this is out today:
         | 
         | "Moderna says it's working on Covid booster shot for variant in
         | South Africa, says current vaccine provides some protection"
         | 
         | "The company's researchers said its current coronavirus vaccine
         | appears to work against the two highly transmissible strains
         | found in the U.K. and South Africa, although it looks like it
         | may be less effective against the latter."
         | 
         | https://www.cnbc.com/2021/01/25/covid-vaccine-moderna-workin...
        
         | foolmeonce wrote:
         | B.1.1.7(UK) and B.1.351(SA) the article links to the source.
         | They say "variants including", but I doubt they would leave out
         | the Brazilian one if it was tested.
        
         | contravariant wrote:
         | The linked study names the 501.V2 / B.1.351 / South African
         | (vulg.) variant. This variant also has the E484K found in the
         | B.1.1.248 / Brazil (vulg.) variant.
         | 
         | That said based on the title you might assume the vaccine to be
         | _as_ effective, but that 's not quite what the study says. In
         | short it states:
         | 
         | >A six-fold reduction in neutralizing titers was observed with
         | the B.1.351 variant relative to prior variants. Despite this
         | reduction, neutralizing titer levels with B.1.351 remain above
         | levels that are expected to be protective.
        
           | ryan_j_naughton wrote:
           | Six fold reduction is extremely concerning!
           | 
           | As the vaccine becomes more widespread, it will be tested
           | more widely by exposure to the virus and this will trigger
           | faster evolutionary cycles by the virus to defeat the
           | vaccine.
           | 
           | My forecast is we will have to get much faster at releasing
           | updated vaccines and distributing them in order to stay ahead
           | of this virus -- and that everyone will need to be vaccinated
           | every 6 months until we hit sufficient heard immunity of the
           | circulating strains such that is stops circulating so rapidly
           | and the speed of mutation consequently reduces.
        
             | tachyonbeam wrote:
             | I believe the same thing. We need a fast vaccine update
             | cycle. We also need much faster production. It looks like
             | the mRNA vaccines have the fastest turnover cycle. IMO the
             | government should employ emergency measures to force Pfizer
             | and Moderna to upgrade their production facilities to 10x
             | what they are now. Get other companies involved. Pour as
             | much money as necessary.
             | 
             | Fortunately, it seems there is openness from the FDA to
             | have a faster approval cycle for vaccine tweaks. Moderna is
             | already working on a "booster shot" to try and increase
             | immunity to the South-African variant.
             | 
             | I wish that we also had other therapeutic tools to combat
             | COVID. I wonder if we couldn't save people who are getting
             | hospitalized by employing drugs that block the receptor the
             | virus uses to enter cells. Similarly to the way HIV is kept
             | under control. That could save lives and it would be more
             | mutation-proof.
        
               | temp667 wrote:
               | I hate suggestion like this - most of the government
               | involvement so far has been negative - don't wear masks,
               | do wear masks and cloth masks are fine (they probably are
               | not). We're going to cancel doctors license who go out of
               | order in vaccine distribution (so now when the 65 year
               | old drives their 75 year old partner in they can't both
               | be vaccinated).
               | 
               | If anyone actually cared about this there is an EXISTING
               | mechanism to get business to produce pretty much any
               | quantity of anything you want. You pay them money.
               | Instead the government is constantly canceling contracts,
               | seizing products, stopping the sale of products for more
               | than 10% more than historic prices etc.
               | 
               | ALL these steps REDUCE confidence in making a big / high
               | risk investment.
               | 
               | My guess - if we looked at even existing use of the DPA -
               | probably most stuff got made by folks not expert in
               | making it and sat in a warehouse. I'm serious - I want to
               | know how many ventilators made under DPA by rando
               | companies are actually in use?
               | 
               | I've worked in govt contracting - the govt does not get
               | "the best" producers to produce, in situations like this
               | the hands reach out from the experts playing the govt
               | contracting game. Not end of world normally, but with
               | lives on the line some more standard approaches would be
               | refreshing.
        
               | tachyonbeam wrote:
               | This is an emergency situation. I don't know if we can
               | count on individual companies to just do the right thing.
               | They might be risk-averse, afraid of financial losses,
               | but we need them to go full-steam ahead. Pfizer and
               | Moderna should definitely be financially compensated for
               | everything they produce. We could pay them above cost and
               | basically guarantee their financial success in this
               | operation.
               | 
               | It's possible that the current generation of vaccines
               | could end up being outdated, and there could be some
               | amount of waste, but the important thing is the
               | production rate. When an updated vaccine becomes
               | available, we want to be able to produce it and
               | distribute it as fast as possible.
               | 
               | On another note, there's also research into oral
               | vaccines. IMO that would be amazing if it could pan out.
               | Imagine if we could just mail people capsules containing
               | booster doses updated for the latest strain every month.
               | We'd crush any pandemic in no time.
        
               | maxerickson wrote:
               | The really wild vaccines use a self replicating viral
               | vector. One of Merck's discontinued candidates used a
               | live, replicating virus.
               | 
               | I guess if you really nail the science, you can make it
               | infectious and vaccinate by breathing on people.
        
               | inpdx wrote:
               | Disagree completely.
               | 
               | This is war. Governments fight wars. It's one of the
               | primary roles of government. In WW2 all sorts of
               | prioritization and direction came from government. This
               | should be the same.
        
             | throwaway894345 wrote:
             | I wonder what would be the implications for being able to
             | develop and deliver RNA vaccines on this shorter, more
             | regular timeline? Specifically, does the infrastructure
             | required to accomplish this goal also bring other vaccines
             | or treatments in the realm of feasibility?
        
               | neuronic wrote:
               | Of course, mRNA vaccines on their own open up a new
               | category of vaccination. E.g. Biontech is working on a
               | mRNA multiple sclerosis vaccine and cancer vaccines.
        
             | djrogers wrote:
             | That scenario only plays out if vaccinated people can be
             | carriers. If not, virus that is exposed to the vaccine will
             | not have a chance to evolve more quickly.
        
               | corin_ wrote:
               | Even if they cant, for the period when there are lots of
               | people vaccinated and also lots of people infected,
               | that's lots of mutations happening in infected people and
               | then trying to jump into vaccinated people, giving it
               | more chances that one of those mutations would then
               | spread from vaccinations people even if current mutations
               | don't (which isn't known yet). If it spreads from
               | vaccinated people already then that would be even worse.
        
             | maxerickson wrote:
             | Aren't most antibodies at this point a result of infection?
        
         | anonuser123456 wrote:
         | EK484K is a particular mutation, not a variant. It is common to
         | a Brazilian variant and the SA variant referenced in the
         | article.
        
       | dehrmann wrote:
       | I'm not surprised. These new variants started taking over months
       | ago before many people were vaccinated, so there was no pressure
       | to adapt to the vaccines.
       | 
       | My theory is that what they _are_ adapting to is all the other
       | mitigation measures that we 've been doing for a while--think
       | masks and social distancing.
        
         | jerf wrote:
         | Viruses can't really "adapt" to "not being spread". It's not
         | _quite_ zero, I suppose we could hypothesize some superior
         | ability to survive on a surface for some period of time or
         | something, but there 's not _much_ they can do about it.
         | 
         | Bacteria would have more options, since they're so much more
         | complex. Viruses just don't have much they can do.
        
           | Skunkleton wrote:
           | > Viruses can't really "adapt" to "not being spread".
           | 
           | Of course they can. We have this pandemic because a
           | coronavirus became highly transmissible.
        
             | sjg007 wrote:
             | It most likely jumped the species barrier.
        
           | lazide wrote:
           | They mutate, and mutations more successful in causing
           | infections cause more infections and become dominant.
           | 
           | There are many ways for this to happen, some of which covered
           | in this thread - changes in the surface presented to the
           | host, more viral load produced and expelled by an infected
           | host earlier being some obvious ones.
           | 
           | Some potential methods that have occurred with other diseases
           | in the past include additional methods of infecting hosts
           | (from prior versions), such as viral envelopes that can
           | insert against additional types of cells, or changes to the
           | way the virus hijacks cell replication machinery to produce
           | products that are better at hiding what is going on to the
           | immune system.
        
       | amelius wrote:
       | Is the efficacy still in the 94% range?
        
         | niea_11 wrote:
         | From the abstract of the paper linked in the article: No change
         | for the UK variant, but lower efficacy for the South African
         | variant (if my understanding of the abstract is correct):
         | 
         |  _No significant impact on neutralization against the B.1.1.7
         | variant was detected in either case, however reduced
         | neutralization was measured against the mutations present in
         | B.1.351._
         | 
         | Paper :
         | https://www.biorxiv.org/content/10.1101/2021.01.25.427948v1
        
         | bdonlan wrote:
         | This study was done in a laboratory based on blood samples and
         | does not directly equate to a percentage effectiveness.
         | Collecting data on actual effectiveness in the wild, as it
         | were, will require a sufficient number of vaccinated people to
         | come into contact with the variant strains in question, and
         | will therefore take a few months, most likely.
        
         | SpicyLemonZest wrote:
         | They believe so ("neutralizing titer levels with B.1.351 remain
         | above levels that are expected to be protective"), but this was
         | a blood sample study that can't definitively demonstrate
         | population efficacy.
        
       | 02020202 wrote:
       | "vaccine"
        
       | Exmoor wrote:
       | Here's a link to the actual study:
       | https://www.biorxiv.org/content/10.1101/2021.01.25.427948v1
       | 
       | I believe most of the vaccines approved or pending approval
       | (Johnson and Johnson) target the spike protein, so I would expect
       | their results to likely (hopefully) be similar.
        
       | andred14 wrote:
       | Here let me fix it:
       | 
       | "Moderna vaccine kills Hank Aaron one week after he receives it"
        
       | jeofken wrote:
       | If we fail to totally eradicate these strains of coronavirus from
       | earth, like we have never ever in history managed, is lockdown
       | forever right - the end of free life? Or was it just something
       | required in 2020 for some reason?
        
         | maxerickson wrote:
         | A big change is that there is vaccine production capacity now,
         | and the new vaccines can go through an approval process like is
         | used for annual flu shots, meaning a new vaccine can start mass
         | production in a few months vs the (very quick) year that it
         | took this time.
         | 
         | A year ago there wasn't much more than experimental capacity to
         | make mRNA vaccines. Now we are at tens of millions of doses a
         | month and scaling up.
        
           | mlindner wrote:
           | Actually much faster than months. MRNA-based vaccines can be
           | brewed up in days to weeks.
        
             | maxerickson wrote:
             | The approval of the update adds some time. I guess you can
             | be manufacturing at the start of that.
        
               | ceejayoz wrote:
               | Updates are likely to be fairly streamlined, though; we
               | already do this for the annual flu shot.
        
         | ceejayoz wrote:
         | > like we have never ever in history managed
         | 
         | Smallpox would like a word.
         | 
         | Polio, too, for the most part.
        
           | mlindner wrote:
           | SARS and MERS as well, which is notably more relevant. These
           | don't exist anymore.
        
             | nradov wrote:
             | MERS hasn't been eradicated. There are animal hosts, mainly
             | camels, and people occasionally still get infected.
        
           | lostapathy wrote:
           | COVID is different in that it appears to have numerous
           | animals it can live in. It's one thing to lock down people,
           | but another entirely to lockdown animals.
        
           | paganel wrote:
           | Those two took decades to eradicate, we won't be able to keep
           | the Earth's population on lockdown/no-lockdown cycles for
           | that long.
        
             | ceejayoz wrote:
             | That's a goalpost move, and a matter of logistics, not
             | outright impossibility.
        
             | organsnyder wrote:
             | We didn't keep the Earth's population on lockdown for the
             | centuries/millenia before those diseases were brought under
             | control.
        
         | iso1631 wrote:
         | Lockdown is required when there is a risk of more paitents from
         | an infectious disease than there are beds. Lockdown isn't the
         | purpose, the purpose is to stop the number of new paitents
         | requiring hospital from outnumbering the number of paitents
         | leaving hospital (either walking or in a bodybag)
         | 
         | When was the last last time we had a disease that spread this
         | quickly and caused this many hospitalisations, on a global
         | scale?
        
         | chasd00 wrote:
         | even CA is lifting their stay at home order. I think the
         | political costs of these hobby authoritarian regimes are
         | finally getting too expensive.
        
         | jerf wrote:
         | Coronavirus will naturally evolve into the attraction basin for
         | viruses of its type, which is the common cold:
         | https://www.sacbee.com/news/coronavirus/article248455480.htm...
         | 
         | It's already well on its way, from what I can gather.
         | 
         | One frustrating aspect of the reporting for me is people
         | talking about "more infectious" variants without describing
         | whether or not they are more or less _dangerous_. In general,
         | the virus putting more work into being infectious is _good
         | news_ ; it generally comes at the cost of being less dangerous
         | in other ways as it hyper-optimizes into replication rather
         | than anything else. We should expect and want to hear about
         | "more infectious" variants, which double as natural vaccines to
         | some extent against other less infectious, more dangerous
         | strains still using the same external protiens.
        
           | InitialLastName wrote:
           | There's a substantial lag, though, between finding out how
           | infectious a variant is and how deadly it is (AIUI the rough
           | averages are 2 weeks from infection to hospitalization and
           | another 2 weeks from hospitalization to deaths, but that
           | might have changed). That means that the data on how
           | infectious a variant is becomes available ~1month ahead of
           | information about how dangerous it is. Have we even had
           | confirmed spread of these variants for a month?
        
           | watt wrote:
           | There is some talk that it also _is_ deadly.
           | https://www.theguardian.com/world/2021/jan/22/new-uk-
           | covid-v...
        
             | slumdev wrote:
             | "30% more deadly" means that only 99.6% of people survive
             | it rather than 99.7%. Still not ebolapocalypse.
        
             | jerf wrote:
             | It may be, but that article is also hedging quite a bit.
             | 
             | People have a hard time with this intuitively, because we
             | probably live under the weakest selection pressure in the
             | history of planet Earth, but it's vicious down there.
             | Viruses are to a large extent playing a zero-sum game. If
             | they get better at one thing, it almost _has_ to come at
             | the cost of something else, because they 've already got
             | all the knobs cranked up as high as they will go just to
             | survive and they don't have a spare energy budget just
             | lying around to put into other things without taking away
             | from something else.
             | 
             | It's not _impossible_ that some mutation was made that made
             | it more infectious _and_ more deadly... but it 's a long
             | enough shot that I'd consider the likelihood of incomplete
             | early information and incentives that some parties have to
             | amp up the danger in the presence of such uncertainty
             | higher. Viruses do not routinely become more infectious
             | _and_ more deadly. If they did, we 'd all be long dead. The
             | evolution gradient tilts _strongly_ away from that.
        
               | sjg007 wrote:
               | The virus exists in multiple species. It may be perfectly
               | fine in bats and reproduce without killing the bat. In
               | humans, however, it kills.
        
               | thehappypm wrote:
               | Very true, especially when you consider that a more
               | deadly variant is highly likely to be associated with
               | things like higher viral load, worse symptoms, and faster
               | symptom onset. A virus that kills twice as many people
               | will likely be harmful for twice as many people -- giving
               | the virus fewer asymptomatic hosts that go around
               | spreading without even knowing it.
               | 
               | It's more likely to go the other way; some derpy mutation
               | that reduces viral load, slows incubation, reduces
               | symptoms, makes more super-spreaders.
        
           | NLips wrote:
           | BBC's _More or Less_ did a bit on this. 70% more deadly (per
           | person) would actually be better than 70% more infectious.
           | Deaths increase linearly with deadliness of virus, but they
           | increase exponentially with infectiousness.
           | 
           | Say the current mortality rate is 2% and each infected person
           | passes on the disease to one other after a week, then stops
           | being infectious. If 100 people have the virus in week 0,
           | after 10 weeks 1000 people will have had the virus and 20
           | will have died.
           | 
           | Increase the death rate by 70% and you'd have 34 deaths
           | instead. Increase the transmission rate by 70%, and you'd
           | have 170 people newly infected in week 1, then 289 in week 2,
           | totalling 285,000 infected people, of which 2% die. That's
           | now 570 deaths.
           | 
           | Obviously the numbers can all be changed somewhat depending
           | on treatment, or whether you expect everyone to be infected
           | at some point anyway, but the takeaway is that more deadly is
           | not necessarily worse than more infectious.
        
       | hehehaha wrote:
       | The question should be can you get re-infected via SA variant.
       | And what's the mortality rate on re-infection? At this point, you
       | have to assume vaccine rollout is too slow to catch up with the
       | spread.
        
       | traveler01 wrote:
       | Since there are probably specialists out there, can you answer me
       | a question?
       | 
       | Since these vaccines are targeting spike proteins, shouldn't they
       | work with every variant? Is there (big) risk of a mutation
       | actually changing the spike protein?
        
         | raphlinus wrote:
         | I'm not a specialist, but I can link you to the answer: [1]
         | 
         | Key quote: "B.1.1.7 is defined by 23 mutations from the
         | original Wuhan strain, 8 of which are in the spike protein. The
         | 3 mutations hypothesized to have the largest potential
         | biological effect are N501Y, spike deletion 69-70del and
         | P681H."
         | 
         | The B.1.351 (South Africa) variant has N501Y but not the 69-70
         | deletion. We're still learning, but virologists I follow are
         | concerned that N501Y may be a driver of higher transmission.
         | But it's likely that multiple mutations contribute.
         | 
         | [1]: https://asm.org/Articles/2021/January/B-1-1-7-What-We-
         | Know-A...
        
         | thehappypm wrote:
         | When the immune system creates antibodies, they basically hug
         | the spike protein and build antibodies on every nook and cranny
         | they can find a way to bind an antibody. These regions are
         | called epitopes, and the immune system creates many antibodies
         | for each invader.
         | 
         | If the spike protein mutates, it means that the structure of
         | the spike is different. Obviously the spike can't change too
         | much, because it needs to still be able to latch onto cells,
         | and many changes would be irrelevant. Even if one antibody
         | suddenly stops working because of a slight shift in the
         | protein, there are other antibodies targeting different parts
         | of the protein that would still be effective.
         | 
         | Only if the spike changes so dramatically that literally none
         | of the antibodies you had before are relevant anymore. That's
         | why it's not super expected that we'll get a version of the
         | virus that these vaccines won't at least produce some
         | antibodies against.
        
         | CyanLite2 wrote:
         | ELI5: The spike protein itself is changing on the virus.
        
       | officialchicken wrote:
       | Unpublished, non-peer reviewed, and sample size of 8... is there
       | a well known name for opposite of FUD?
        
         | outlace wrote:
         | Hubris
        
         | renewiltord wrote:
         | Well, in your analysis, what's the minimum sample size and why?
        
         | schoolornot wrote:
         | The more guessing and conjecture I hear about the effectiveness
         | of current vaccines on mutations, the angrier I get. Are there
         | any clinical trials going on right now to determine how well
         | various strains respond to the current vaccines? Until Pfizer
         | or Moderna puts out a press release saying their products cover
         | the top 4 major strains, I'm not believing anything.
        
           | bdonlan wrote:
           | There are two ways to do clinical trials on vaccine
           | effectiveness. One is to vaccinate someone and then
           | deliberately infect them; this gives you good data quickly,
           | but due to the deadliness of COVID-19, this is generally
           | regarded to not be an option. Another is to vaccinate a very
           | large number of people and wait to see if they get sick with
           | the virus from natural exposure. This is ongoing right now on
           | a very large scale; millions of people have been vaccinated,
           | and sooner or later people will come in contact with these
           | new variants. However, it takes time to collect enough data
           | with this approach to provide useful results, and in this
           | case it can be confounded by the lack of a control group (you
           | don't know how many exposure events happened that did not
           | lead to infections).
           | 
           | Regardless, the current vaccination campaign is highly
           | effective against the original - still very widespread and
           | deadly - virus, so it's worth getting it, and as people get
           | vaccinated with it, it will eventually be apparent whether it
           | works against various variants as well. If it doesn't, it's
           | likely that a booster vaccination can be developed for these
           | variants (and indeed, Moderna has begun work, as an insurance
           | policy, on a booster for the south african variant).
        
             | krona wrote:
             | Actually the UK is performing a challenge trial with young
             | adults. Sign up here to get infected:
             | https://ukcovidchallenge.com/covid-19-volunteer-trials/
        
         | kaycebasques wrote:
         | > is there a well known name for opposite of FUD?
         | 
         | False hope
        
         | bpodgursky wrote:
         | "Peer review" is not a suicide pact. In the middle of a
         | pandemic, where days matter, you publish information as you get
         | it, and act with that understanding.
        
           | Nightshaxx wrote:
           | I disagree. In a pandemic it's important to get solid and
           | clear information to the population. If you start saying
           | things that don't go through the proper channels to be
           | verified as reasonably true, then you create massive
           | confusion when you potentially have to go back on that
           | information. Scientists can and do make mistakes. A lay
           | person might not understand what "preprint" or "not peer
           | reviewed" mean yet this article is on the BBC which the
           | average lay person does trust as a source for reasonably true
           | information.
        
             | sgt101 wrote:
             | I think that if "the other side" sticks to the rules and
             | doesn't publish things like
             | :https://www.theguardian.com/society/2021/jan/20/covid-
             | vaccin... using small sample sizes and various assertions
             | about how the immune system works then you are right!
             | 
             | On the other hand, if you are in a situation where no holds
             | bared screaming to get attention is the norm then it may be
             | good to share information quickly and transparently.
        
             | iso1631 wrote:
             | Last week the media in the uk ran headlines saying that
             | covid was spreading like wildfire, despite the evidence
             | from the number of cases showing the opposite (halving
             | every 2 weeks)
             | 
             | The day later they ran headlines sayign that covid wasn't
             | spreading like wildfire.
             | 
             | The source of the first scaremongering inaccurate dangerous
             | headline was a study which said:                 During the
             | period 6 January to 15 January, SARS-CoV-2 virus was
             | circulating with a higher prevalence than between 25
             | November to 3 December with 158 in 10,000 infected. There
             | was no strong evidence for either growth or decay in
             | prevalence averaged across the period 6 January to 15
             | January.
             | 
             | Which led to headlines like
             | 
             | "Covid-19 cases have increased more quickly since lockdown
             | started in England, study finds"
             | 
             | (Lockdown started on Jan 5th - when about 60,000 cases were
             | being identified each day. The headline was Jan 21st, when
             | about 30,000 cases were identified)
             | 
             | https://inews.co.uk/news/covid-19-cases-england-increase-
             | sin...
             | 
             | The 7 day cases identified from Jan 6th to 15th dropped
             | from 55,885/day to 40,242/day
             | 
             | That either means the number of unidentified cases
             | balooned, or the REACT study was too small to identify
             | changes over the course of a week (it's not designed to).
             | In the former case we'd expect fewer tests were being done,
             | but tests throughout January have remained averaging about
             | 550,000 a day.
             | 
             | The media will print whatever they can, so it's important
             | to give headlines which make it clear the data is
             | inconclusive. "appears" is a weasel-word that is well used
             | in this case, and far better than misreporting a scientific
             | paper
        
         | matthewmacleod wrote:
         | This seems like an unreasonable assessment. The preprint is
         | available
         | (https://www.biorxiv.org/content/10.1101/2021.01.25.427948v1),
         | submitted for peer review, and the article is pretty clear from
         | the start that this is a preliminary finding.
        
           | sambe wrote:
           | Where was it submitted? I couldn't see that anywhere.
        
             | matthewmacleod wrote:
             | I'm not sure; the Moderna release mentions submission but
             | doesn't specify.
        
         | thehappypm wrote:
         | Sample size of 8 is not really a huge issue for this kind of
         | analysis.
         | 
         | The hypothesis is that the Moderna vaccine produces antibodies
         | against the new variant.
         | 
         | 8/8 people sampled produced antibodies.
         | 
         | Can we confidently say that 100% of people will produce
         | antibodies? No, not with a sample size of 8.
         | 
         | Can we say confidently that 50% of people will produce
         | antibodies? That the vaccine gives you a coin toss's odds? If
         | it's just a coin toss, this result would be the same
         | probability as 8 "heads" in a row, or 1 in 256.
         | 
         | So, the result is hardly FUD or meaningless. They've also
         | submitted to journals for the world to inspect the results.
        
         | mcc1ane wrote:
         | hype
        
         | ogre_codes wrote:
         | This result is the absence of bad news. No more, no less.
         | 
         | Regardless of what this early result is, the only thing most of
         | us can do is try to keep social distancing, use masks, and get
         | vaccinated to protect ourselves as best as possible.
         | 
         | If the vaccine doesn't actually protect us against the newer
         | strains, we should _still take it_ because we need protection
         | from the more widely strain regardless. The only difference is
         | whether we 'll need to take a second vaccine in another year.
        
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