Package loci.formats

Interface Summary
BZip2Constants Base class for both the compress and decompress classes.
 

Class Summary
AndorReader Reader is the file format reader for Andor Bio-imaging Division (ABD) TIFF files.
AVIReader AVIReader is the file format reader for uncompressed AVI files.
AVIWriter AVIWriter is the file format writer for AVI files.
BaseTiffReader BaseTiffReader is the superclass for file format readers compatible with or derived from the TIFF 6.0 file format.
BioRadReader BioRadReader is the file format reader for Bio-Rad PIC files.
BitBuffer A class for reading arbitrary numbers of bits from a byte array.
BitWriter A class for writing arbitrary numbers of bits to a byte array.
BMPReader BMPReader is the file format reader for Microsoft Bitmap (BMP) files.
ByteVector A growable array of bytes.
CBZip2InputStream An input stream that decompresses from the BZip2 format (without the file header chars) to be read as any other stream.
ComboFileFilter A file filter that recognizes files from a union of other filters.
Compression A utility class for handling various compression types.
CRC A simple class the hold and calculate the CRC for sanity checking of the data.
DataTools A utility class with convenience methods for reading, writing and decoding words.
DeltavisionReader DeltavisionReader is the file format reader for Deltavision files.
ExtensionFileFilter A file filter based on file extensions, for use with a JFileChooser.
FluoviewReader FluoviewReader is the file format reader for Olympus Fluoview TIFF files.
FormatFileFilter A file filter for a biological file format, for use with a JFileChooser.
FormatHandler Abstract superclass of all biological file format readers and writers.
FormatReader Abstract superclass of all biological file format readers.
FormatWriter Abstract superclass of all biological file format writers.
GatanReader GatanReader is the file format reader for Gatan files.
GIFReader GIFReader is the file format reader for Graphics Interchange Format (GIF) images.
ICSReader ICSReader is the file format reader for ICS (Image Cytometry Standard) files.
ImageIOReader ImageIOReader is the superclass for file format readers that use the javax.imageio package.
ImageJReader ImageJReader is the file format reader for the image formats supported by Wayne Rasband's excellent ImageJ program: DICOM, FITS, PGM, JPEG, GIF, LUT, BMP, TIFF, ZIP-compressed TIFF and ROI.
ImageReader ImageReader is master file format reader for all supported formats.
ImageTester A class for testing the ImageTools.makeImage methods.
ImageTools A utility class with convenience methods for manipulating images.
ImageViewer ImageViewer is a simple viewer/converter for the LOCI Bio-Formats image formats.
ImageWriter ImageWriter is master file format writer for all supported formats.
IPLabReader IPLabReader is the file format reader for IPLab (.IPL) files.
IPWReader IPWReader is the file format reader for Image-Pro Workspace (IPW) files.
JPEGReader JPEGReader is the file format reader for JPEG images.
JPEGWriter JPEGWriter is the file format writer for JPEG files.
LegacyPictReader LegacyPictReader is the old file format reader for Apple PICT files.
LegacyQTReader LegacyQTReader is the old file format reader for QuickTime movie files.
LegacyZVIReader LegacyZVIReader is the legacy file format reader for Zeiss ZVI files.
LeicaReader LeicaReader is the file format reader for Leica files.
LZWTreeNode An LZW-compression helper class for building a symbol table in tree format.
MetamorphReader Reader is the file format reader for Metamorph STK files.
OMETools A utility class for constructing and manipulating OME-XML DOMs.
OMEXMLReader OMEXMLReader is the file format reader for OME-XML files.
OpenlabReader OpenlabReader is the file format reader for Openlab LIFF files.
PerkinElmerReader PerkinElmerReader is the file format reader for PerkinElmer files.
PictReader PictReader is the file format reader for Apple PICT files.
PNGReader PNGReader is the file format reader for Portable Network Graphics (PNG) images.
QTReader QTReader is the file format reader for QuickTime movie files.
QTWriter QTWriter is the file format writer for uncompressed QuickTime movie files.
RandomAccessArray An extension of RandomAccessFile providing random access into an array of bytes directly from memory.
ReflectedUniverse A general-purpose reflection wrapper class.
SEQReader SEQReader is the file format reader for Image-Pro Sequence files.
TiffRational A rational number (numerator over denominator).
TiffReader TiffReader is the file format reader for TIFF files.
TiffTools A utility class for manipulating TIFF files.
TiffWriter TiffWriter is the file format writer for TIFF files.
ZeissLSMReader ZeissLSMReader is the file format reader for Zeiss LSM files.
ZeissZVIReader ZeissZVIReader is the file format reader for Zeiss ZVI files.
 

Exception Summary
FormatException FormatException is the exception thrown when something goes wrong performing a file format operation.
ReflectException ReflectException is the exception thrown when something goes wrong performing a reflected operation with ReflectedUniverse.