loci.formats
Class ZeissLSMReader

java.lang.Object
  loci.formats.FormatHandler
      loci.formats.FormatReader
          loci.formats.BaseTiffReader
              loci.formats.ZeissLSMReader

public class ZeissLSMReader

extends BaseTiffReader

ZeissLSMReader is the file format reader for Zeiss LSM files.

Field Summary

Fields inherited from class loci.formats.BaseTiffReader

ifds, in, numImages

Fields inherited from class loci.formats.FormatReader

DEBUG, DEBUG_LEVEL, metadata, ome

Fields inherited from class loci.formats.FormatHandler

chooser, currentId, filters, format, suffixes

Constructor Summary

ZeissLSMReader()
Constructs a new Zeiss LSM reader.

Method Summary

protected void	initFile(String id) Initializes the given Zeiss LSM file.
protected void	initMetadata() Populates the metadata hashtable.
boolean	isThisType(byte[] block) Checks if the given block is a valid header for a Zeiss LSM file.
static void	main(String[] args)
protected void	parseOverlays(long data, String suffix, boolean little) Parses overlay-related fields.
protected void	parseSubBlocks(long data, String suffix, boolean little) Parses subblock-related fields.

Methods inherited from class loci.formats.BaseTiffReader

close, getImageCount, getTiffDimensions, initOMEMetadata, initStandardMetadata, open, put, put, put, put, put, put, put, put, put, put, putInt

Methods inherited from class loci.formats.FormatReader

createFilters, getMetadata, getMetadataValue, getOMENode, open, testRead

Methods inherited from class loci.formats.FormatHandler

getFileChooser, getFileFilters, getFormat, getSuffixes, isThisType

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ZeissLSMReader

public ZeissLSMReader()

Constructs a new Zeiss LSM reader.

Method Detail

isThisType

public boolean isThisType(byte[] block)

Checks if the given block is a valid header for a Zeiss LSM file.

Overrides:

isThisType in class BaseTiffReader

initFile

protected void initFile(String id)
                 throws FormatException,
                        IOException

Initializes the given Zeiss LSM file.

Overrides:

initFile in class BaseTiffReader

Throws:

FormatException

IOException

initMetadata

protected void initMetadata()

Populates the metadata hashtable.

Overrides:

initMetadata in class BaseTiffReader

parseOverlays

protected void parseOverlays(long data,
                             String suffix,
                             boolean little)
                      throws IOException

Parses overlay-related fields.

Throws:

IOException

parseSubBlocks

protected void parseSubBlocks(long data,
                              String suffix,
                              boolean little)
                       throws IOException

Parses subblock-related fields.

Throws:

IOException

main

public static void main(String[] args)
                 throws FormatException,
                        IOException

Throws:

FormatException

IOException