loci.formats
Class MetamorphReader

java.lang.Object
  loci.formats.FormatHandler
      loci.formats.FormatReader
          loci.formats.BaseTiffReader
              loci.formats.MetamorphReader

public class MetamorphReader

extends BaseTiffReader

Reader is the file format reader for Metamorph STK files.

Field Summary

Fields inherited from class loci.formats.BaseTiffReader

ifds, in, numImages

Fields inherited from class loci.formats.FormatReader

DEBUG, DEBUG_LEVEL, metadata, ome

Fields inherited from class loci.formats.FormatHandler

chooser, currentId, filters, format, suffixes

Constructor Summary

MetamorphReader()
Constructs a new Metamorph reader.

Method Summary

static String	decodeDate(int julian) Converts a Julian date value into a human-readable string.
static String	decodeTime(int millis) Converts a time value in milliseconds into a human-readable string.
protected void	initFile(String id) Initializes the given Metamorph file.
protected void	initOMEMetadata() Initialize the OME-XML tree.
protected void	initStandardMetadata() Populates the metadata hashtable.
boolean	isThisType(byte[] block) Checks if the given block is a valid header for a Metamorph file.
static void	main(String[] args)

Methods inherited from class loci.formats.BaseTiffReader

close, getImageCount, getTiffDimensions, initMetadata, open, put, put, put, put, put, put, put, put, put, put, putInt

Methods inherited from class loci.formats.FormatReader

createFilters, getMetadata, getMetadataValue, getOMENode, open, testRead

Methods inherited from class loci.formats.FormatHandler

getFileChooser, getFileFilters, getFormat, getSuffixes, isThisType

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MetamorphReader

public MetamorphReader()

Constructs a new Metamorph reader.

Method Detail

isThisType

public boolean isThisType(byte[] block)

Checks if the given block is a valid header for a Metamorph file.

Overrides:

isThisType in class BaseTiffReader

initFile

protected void initFile(String id)
                 throws FormatException,
                        IOException

Initializes the given Metamorph file.

Overrides:

initFile in class BaseTiffReader

Throws:

FormatException

IOException

initOMEMetadata

protected void initOMEMetadata()

Initialize the OME-XML tree.

Overrides:

initOMEMetadata in class BaseTiffReader

initStandardMetadata

protected void initStandardMetadata()

Populates the metadata hashtable.

Overrides:

initStandardMetadata in class BaseTiffReader

decodeDate

public static String decodeDate(int julian)

Converts a Julian date value into a human-readable string.

decodeTime

public static String decodeTime(int millis)

Converts a time value in milliseconds into a human-readable string.

main

public static void main(String[] args)
                 throws FormatException,
                        IOException

Throws:

FormatException

IOException