loci.formats
Class LeicaReader

java.lang.Object
  loci.formats.FormatHandler
      loci.formats.FormatReader
          loci.formats.LeicaReader

public class LeicaReader

extends FormatReader

LeicaReader is the file format reader for Leica files.

Field Summary

protected String[]	files Array of image file names.
protected Hashtable[]	headerIFDs Array of IFD-like structures containing metadata.
protected RandomAccessFile	in Current file.
protected boolean	littleEndian Flag indicating whether current file is little endian.
protected int	numImages Number of images in the dataset.
protected TiffReader	tiff Helper reader.

Fields inherited from class loci.formats.FormatReader

DEBUG, DEBUG_LEVEL, metadata, ome

Fields inherited from class loci.formats.FormatHandler

chooser, currentId, filters, format, suffixes

Constructor Summary

LeicaReader()
Constructs a new Leica reader.

Method Summary

void	close() Closes any open files.
int	getImageCount(String id) Determines the number of images in the given Leica file.
protected void	initFile(String id) Initializes the given Leica file.
protected void	initMetadata() Populates the metadata hashtable and OME root node.
boolean	isThisType(byte[] block) Checks if the given block is a valid header for a Leica file.
boolean	isThisType(String name) Checks if the given string is a valid filename for a Leica file.
static void	main(String[] args)
BufferedImage	open(String id, int no) Obtains the specified image from the given Leica file.
protected String	stripString(String toStrip) The Leica format is stupid and stores each String as a character array of twice the required size, with a space at every other position.

Methods inherited from class loci.formats.FormatReader

createFilters, getMetadata, getMetadataValue, getOMENode, open, testRead

Methods inherited from class loci.formats.FormatHandler

getFileChooser, getFileFilters, getFormat, getSuffixes

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

in

protected RandomAccessFile in

Current file.

littleEndian

protected boolean littleEndian

Flag indicating whether current file is little endian.

headerIFDs

protected Hashtable[] headerIFDs

Array of IFD-like structures containing metadata.

tiff

protected TiffReader tiff

Helper reader.

numImages

protected int numImages

Number of images in the dataset.

files

protected String[] files

Array of image file names.

Constructor Detail

LeicaReader

public LeicaReader()

Constructs a new Leica reader.

Method Detail

isThisType

public boolean isThisType(byte[] block)

Checks if the given block is a valid header for a Leica file.

Specified by:

isThisType in class FormatReader

isThisType

public boolean isThisType(String name)

Checks if the given string is a valid filename for a Leica file.

Overrides:

isThisType in class FormatHandler

getImageCount

public int getImageCount(String id)
                  throws FormatException,
                         IOException

Determines the number of images in the given Leica file.

Specified by:

getImageCount in class FormatReader

Throws:

FormatException

IOException

open

public BufferedImage open(String id,
                          int no)
                   throws FormatException,
                          IOException

Obtains the specified image from the given Leica file.

Specified by:

open in class FormatReader

Throws:

FormatException

IOException

close

public void close()
           throws FormatException,
                  IOException

Closes any open files.

Specified by:

close in class FormatReader

Throws:

FormatException

IOException

initFile

protected void initFile(String id)
                 throws FormatException,
                        IOException

Initializes the given Leica file.

Overrides:

initFile in class FormatReader

Throws:

FormatException

IOException

initMetadata

protected void initMetadata()

Populates the metadata hashtable and OME root node.

stripString

protected String stripString(String toStrip)

The Leica format is stupid and stores each String as a character array of twice the required size, with a space at every other position. This method removes the blank spaces from a string.

main

public static void main(String[] args)
                 throws FormatException,
                        IOException

Throws:

FormatException

IOException