loci.formats
Class ImageJReader

java.lang.Object
  loci.formats.FormatHandler
      loci.formats.FormatReader
          loci.formats.ImageJReader

public class ImageJReader

extends FormatReader

ImageJReader is the file format reader for the image formats supported by Wayne Rasband's excellent ImageJ program: DICOM, FITS, PGM, JPEG, GIF, LUT, BMP, TIFF, ZIP-compressed TIFF and ROI.

Field Summary

Fields inherited from class loci.formats.FormatReader

DEBUG, DEBUG_LEVEL, metadata, ome

Fields inherited from class loci.formats.FormatHandler

chooser, currentId, filters, format, suffixes

Constructor Summary

ImageJReader()
Constructs a new ImageJ reader.

Method Summary

void	close() Closes any open files.
protected void	createFilters() Creates JFileChooser file filters for this file format.
int	getImageCount(String id) Determines the number of images in the given file.
boolean	isThisType(byte[] block) Checks if the given block is a valid header.
static void	main(String[] args)
BufferedImage	open(String id, int no) Obtains the specified image from the given file.

Methods inherited from class loci.formats.FormatReader

getMetadata, getMetadataValue, getOMENode, initFile, open, testRead

Methods inherited from class loci.formats.FormatHandler

getFileChooser, getFileFilters, getFormat, getSuffixes, isThisType

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ImageJReader

public ImageJReader()

Constructs a new ImageJ reader.

Method Detail

isThisType

public boolean isThisType(byte[] block)

Checks if the given block is a valid header.

Specified by:

isThisType in class FormatReader

getImageCount

public int getImageCount(String id)
                  throws FormatException,
                         IOException

Determines the number of images in the given file.

Specified by:

getImageCount in class FormatReader

Throws:

FormatException

IOException

open

public BufferedImage open(String id,
                          int no)
                   throws FormatException,
                          IOException

Obtains the specified image from the given file.

Specified by:

open in class FormatReader

Throws:

FormatException

IOException

close

public void close()
           throws FormatException,
                  IOException

Closes any open files.

Specified by:

close in class FormatReader

Throws:

FormatException

IOException

createFilters

protected void createFilters()

Creates JFileChooser file filters for this file format.

Overrides:

createFilters in class FormatReader

main

public static void main(String[] args)
                 throws FormatException,
                        IOException

Throws:

FormatException

IOException