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Message-Id: <200512211750.jBLHo0xL013440@smithers.neuro.mcw.edu>
Date: Wed, 21 Dec 2005 11:50:00 -0600 (CST)
From: Jason Bacon <bacon@smithers.neuro.mcw.edu>
Reply-To: Jason Bacon <bacon@smithers.neuro.mcw.edu>
To: FreeBSD-gnats-submit@freebsd.org
Cc:
Subject: New port: science/afni Analysis of Fucntional NeuroImages
X-Send-Pr-Version: 3.113
X-GNATS-Notify:

>Number:         90752
>Category:       ports
>Synopsis:       New port: science/afni Analysis of Fucntional NeuroImages
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    vd
>State:          closed
>Quarter:        
>Keywords:       
>Date-Required:  
>Class:          change-request
>Submitter-Id:   current-users
>Arrival-Date:   Wed Dec 21 18:00:18 GMT 2005
>Closed-Date:    Wed Jan 25 17:53:08 GMT 2006
>Last-Modified:  Tue Feb 14 19:10:45 CET 2006
>Originator:     Jason Bacon
>Release:        FreeBSD 5.4-RELEASE i386
>Organization:
Medical College of Wisconsin
>Environment:
System: FreeBSD smithers.neuro.mcw.edu 5.4-RELEASE FreeBSD 5.4-RELEASE #2: Wed Aug 24 14:54:53 CDT 2005 bacon@clone.neuro.mcw.edu:/usr/obj/usr/src/sys/clone i386
>Description:
	AFNI (Analysis of Functional NeuroImages) is a large
	suite of tools for viewing and analyzing brain image data, 
	especially from functional MRI scans.  Due to the enormous size of
	AFNI, I have purposely strayed from convention and designated a private
	subdirectory for it and other MRI tools in /usr/local/mri, so that 
	/usr/local/bin won't get completely clobbered.  Ports of other MRI 
	tools will follow, and will also be installed in /usr/local/mri.

# This is a shell archive.  Save it in a file, remove anything before
# this line, and then unpack it by entering "sh file".  Note, it may
# create directories; files and directories will be owned by you and
# have default permissions.
#
# This archive contains:
#
#	science/afni/
#	science/afni/Makefile
#	science/afni/pkg-descr
#	science/afni/distinfo
#	science/afni/pkg-message
#	science/afni/pkg-plist
#
echo c - science/afni/
mkdir -p science/afni/ > /dev/null 2>&1
echo x - science/afni/Makefile
sed 's/^X//' >science/afni/Makefile << 'END-of-science/afni/Makefile'
X############################################################################
X# New ports collection Makefile for:   afni
X# Date created:        11 Jan 2005
X# Whom:                jbacon
X#
X# $FreeBSD$
X#
X
X############################################################################
X# www.neuro.mcw.edu has the latest source distribution from which this port
X# is built.  It will be updated as time permits and necessiaty requires.
X#
X# afni.nimh.nih.gov is the ultimate source for AFNI, and will always
X# contain the latest source release.  If this port is not up to date,
X# you can download the latest sources and build manually using
X# Makefile.BSD, which is included in the source distribution.  If the
X# Makefile.BSD in the afni source distribution is out of date, as
X# occasionally happens, you can download the latest from www.neuro.mcw.edu.
X# I regularly submit updates to NIH, but it sometimes takes a while for them
X# to get into the distribution.
X
XPORTNAME=       afni
XPORTVERSION=    2005.11.18.1920
XCATEGORIES=     science graphics biology
XMASTER_SITES=   http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/ \
X		http://afni.nimh.nih.gov/pub/dist/tgz/
XDISTFILES=      afni_src.tgz afni_doc.tgz afni.1 \
X		Makefile.BSD TTatlas+tlrc.BRIK.gz TTatlas+tlrc.HEAD
XDIST_SUBDIR=    AFNI
XEXTRACT_ONLY=   afni_src.tgz afni_doc.tgz
X
XMAINTAINER=     jbacon@mcw.edu
XCOMMENT=        Advanced Functional Neuro Imaging
X
XLIB_DEPENDS=    Xm.3:${PORTSDIR}/x11-toolkits/open-motif
X
XUSE_GMAKE=      yes
X
X# Build parameters
XWRKSRC=         ${WRKDIR}/afni_src
XMAKEFILE=       Makefile.BSD
XALL_TARGET=     vastness suma
X
X# Install parameters
XSTRIP=
XPREFIX=         ${LOCALBASE}/mri/afni
XMANCOMPRESSED=  yes
XNO_MTREE=       yes
X
Xpost-extract:
X	${CP} -f ${DISTDIR}/${DIST_SUBDIR}/Makefile.BSD ${WRKSRC}
X
Xdo-install:
X	${MKDIR} ${PREFIX}/bin ${PREFIX}/afni_doc
X	${INSTALL_PROGRAM} ${WRKSRC}/BSD/* ${PREFIX}/bin
X	${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/TTatlas* ${PREFIX}/bin
X	${INSTALL_MAN} ${WRKDIR}/afni_doc/* ${PREFIX}/afni_doc
X	${INSTALL_MAN} ${DISTDIR}/${DIST_SUBDIR}/afni.1 ${LOCALBASE}/man/man1
X	${GZIP_CMD} ${LOCALBASE}/man/man1/afni.1
X
Xpost-install:
X	${CAT} pkg-message
X
X.include <bsd.port.mk>
END-of-science/afni/Makefile
echo x - science/afni/pkg-descr
sed 's/^X//' >science/afni/pkg-descr << 'END-of-science/afni/pkg-descr'
XThis is a port of afni, Advanced Functional Neuro Imaging
X
XWWW: http://www.neuro.mcw.edu/~bacon
X
X- Jason
Xjbacon@mcw.edu
END-of-science/afni/pkg-descr
echo x - science/afni/distinfo
sed 's/^X//' >science/afni/distinfo << 'END-of-science/afni/distinfo'
XMD5 (AFNI/afni_src.tgz) = 8f118f55721573feee6efa7bfff64456
XSIZE (AFNI/afni_src.tgz) = 10481603
XMD5 (AFNI/afni_doc.tgz) = 3b085de85fc46908652ae287d1cceb38
XSIZE (AFNI/afni_doc.tgz) = 3267095
XMD5 (AFNI/afni.1) = 39c9a1a39b207cd957f0f0d5ec220e4e
XSIZE (AFNI/afni.1) = 1103
XMD5 (AFNI/Makefile.BSD) = 340123182e9e7ed765c902506c35bea9
XSIZE (AFNI/Makefile.BSD) = 3670
XMD5 (AFNI/TTatlas+tlrc.BRIK.gz) = f5a107b049bc426af5342565f4e5beee
XSIZE (AFNI/TTatlas+tlrc.BRIK.gz) = 159912
XMD5 (AFNI/TTatlas+tlrc.HEAD) = a0ca787a2996d7e66548176808503ac5
XSIZE (AFNI/TTatlas+tlrc.HEAD) = 1750
END-of-science/afni/distinfo
echo x - science/afni/pkg-message
sed 's/^X//' >science/afni/pkg-message << 'END-of-science/afni/pkg-message'
X
X=============================================================================
XUsers will need to have /usr/local/mri/afni/bin in their PATH in order
Xto run programs in the AFNI distribution.
X
XDocumentation can be found in /usr/local/mri/afni/afni_doc.
X
XThe environment AFNI_PLUGIN_PATH must also be set to the bin directory
Xin order to run AFNI plugins.
X
XEach user is advised to create a .afnirc file in their home directory
Xto customize settings.
X
XFor questions or comments regarding this port, please contact the
Xport maintainer: jbacon@mcw.edu
X
XFor AFNI usage, please visit the AFNI WEB site at http://afni.nimh.nih.gov.
X=============================================================================
X
END-of-science/afni/pkg-message
echo x - science/afni/pkg-plist
sed 's/^X//' >science/afni/pkg-plist << 'END-of-science/afni/pkg-plist'
Xafni_doc/1dplot.ps
Xafni_doc/24swap.ps
Xafni_doc/2dImReg.ps
Xafni_doc/2swap.ps
Xafni_doc/3T_toafni.ps
Xafni_doc/3dANOVA.ps
Xafni_doc/3dANOVA2.ps
Xafni_doc/3dANOVA3.ps
Xafni_doc/3dDeconvolve.ps
Xafni_doc/3dExtrema.ps
Xafni_doc/3dFDR.ps
Xafni_doc/3dFWHM.ps
Xafni_doc/3dFriedman.ps
Xafni_doc/3dIntracranial.ps
Xafni_doc/3dKruskalWallis.ps
Xafni_doc/3dMannWhitney.ps
Xafni_doc/3dNLfim.ps
Xafni_doc/3dRegAna.ps
Xafni_doc/3dStatClust.ps
Xafni_doc/3dTSgen.ps
Xafni_doc/3dTcat.ps
Xafni_doc/3dTsmooth.ps
Xafni_doc/3dWavelets.ps
Xafni_doc/3dWilcoxon.ps
Xafni_doc/3daxialize.ps
Xafni_doc/3dbuc2fim.ps
Xafni_doc/3dbucket.ps
Xafni_doc/3dcalc.ps
Xafni_doc/3dclust.ps
Xafni_doc/3dcolon.ps
Xafni_doc/3ddup.ps
Xafni_doc/3dfim+.ps
Xafni_doc/3dfim.ps
Xafni_doc/3dfractionize.ps
Xafni_doc/3dhistog.ps
Xafni_doc/3dinfo.ps
Xafni_doc/3dmaskave.ps
Xafni_doc/3dmerge.ps
Xafni_doc/3dnewid.ps
Xafni_doc/3dnoise.ps
Xafni_doc/3dnvals.ps
Xafni_doc/3dpc.ps
Xafni_doc/3dproject.ps
Xafni_doc/3drefit.ps
Xafni_doc/3drotate.ps
Xafni_doc/3dttest.ps
Xafni_doc/3dvolreg.ps
Xafni_doc/4swap.ps
Xafni_doc/AFNI.changes.cox
Xafni_doc/AFNI.changes.rhammett
Xafni_doc/AFNI.changes.rickr
Xafni_doc/AlphaSim.ps
Xafni_doc/AlphaSim_fig.ps
Xafni_doc/FD2.ps
Xafni_doc/Nonparametric.ps
Xafni_doc/README
Xafni_doc/README.Ifile
Xafni_doc/README.attributes
Xafni_doc/README.bzip2
Xafni_doc/README.changes
Xafni_doc/README.compression
Xafni_doc/README.copyright
Xafni_doc/README.driver
Xafni_doc/README.environment
Xafni_doc/README.func_types
Xafni_doc/README.notes
Xafni_doc/README.roi
Xafni_doc/README.permtest
Xafni_doc/README.plugouts
Xafni_doc/README.realtime
Xafni_doc/README.registration
Xafni_doc/README.render_scripts
Xafni_doc/README.setup
Xafni_doc/README.volreg
Xafni_doc/README.web
Xafni_doc/README.ziad
Xafni_doc/RSFgen.ps
Xafni_doc/Table.ps
Xafni_doc/abut.ps
Xafni_doc/adwarp.ps
Xafni_doc/afni200.ps
Xafni_doc/afni_aux.ps
Xafni_doc/afni_plugins.ps
Xafni_doc/afni_register.ps
Xafni_doc/buckets.ps
Xafni_doc/byteorder.ps
Xafni_doc/ccalc.ps
Xafni_doc/cdf.ps
Xafni_doc/count.ps
Xafni_doc/fim2.ps
Xafni_doc/float_scan.ps
Xafni_doc/from3d.ps
Xafni_doc/ftosh.ps
Xafni_doc/imand.ps
Xafni_doc/imaver.ps
Xafni_doc/imcalc.ps
Xafni_doc/imdump.ps
Xafni_doc/immask.ps
Xafni_doc/imreg.ps
Xafni_doc/imrotate.ps
Xafni_doc/imstack.ps
Xafni_doc/imstat.ps
Xafni_doc/imupsam.ps
Xafni_doc/mritopgm.ps
Xafni_doc/nsize.ps
Xafni_doc/p2t.ps
Xafni_doc/sfim.ps
Xafni_doc/sqwave.ps
Xafni_doc/tfim.ps
Xafni_doc/to3d.ps
Xafni_doc/waver.ps
Xbin/1dcat
Xbin/1ddot
Xbin/1deval
Xbin/1dfft
Xbin/1dgrayplot
Xbin/1dnorm
Xbin/1dplot
Xbin/1dsum
Xbin/1dsvd
Xbin/1dtranspose
Xbin/24swap
Xbin/2dImReg
Xbin/2swap
Xbin/3T_toafni
Xbin/3dAFNIto3D
Xbin/3dAFNItoANALYZE
Xbin/3dAFNItoMINC
Xbin/3dAFNItoNIFTI
Xbin/3dAFNItoNIML
Xbin/3dAFNItoRaw
Xbin/3dANALYZEtoAFNI
Xbin/3dANOVA
Xbin/3dANOVA2
Xbin/3dANOVA3
Xbin/3dAnatNudge
Xbin/3dCM
Xbin/3dAnhist
Xbin/3dAttribute
Xbin/3dAutoTcorrelate
Xbin/3dAutobox
Xbin/3dAutomask
Xbin/3dBRAIN_VOYAGERtoAFNI
Xbin/3dCRUISEtoAFNI
Xbin/3dClipLevel
Xbin/3dConvolve
Xbin/3dDTeig
Xbin/3dDWItoDT
Xbin/3dDeconvolve
Xbin/3dDeconvolve_f
Xbin/3dDespike
Xbin/3dDetrend
Xbin/3dEntropy
Xbin/3dExtrema
Xbin/3dFDR
Xbin/3dFWHM
Xbin/3dFourier
Xbin/3dFriedman
Xbin/3dIntracranial
Xbin/3dKruskalWallis
Xbin/3dLRflip
Xbin/3dLocalstat
Xbin/3dMINCtoAFNI
Xbin/3dMannWhitney
Xbin/3dMax
Xbin/3dMean
Xbin/3dMedianFilter
Xbin/3dNLfim
Xbin/3dNotes
Xbin/3dOverlap
Xbin/3dROIstats
Xbin/3dRegAna
Xbin/3dRowFillin
Xbin/3dSkullStrip
Xbin/3dSpatNorm
Xbin/3dStatClust
Xbin/3dSurf2Vol
Xbin/3dSurfMask
Xbin/3dTSgen
Xbin/3dTagalign
Xbin/3dTcat
Xbin/3dTcorrelate
Xbin/3dThreetoRGB
Xbin/3dToutcount
Xbin/3dTqual
Xbin/3dTshift
Xbin/3dTstat
Xbin/3dTsmooth
Xbin/3dUndump
Xbin/3dUniformize
Xbin/3dVol2Surf
Xbin/3dWarp
Xbin/3dWarpDrive
Xbin/3dWavelets
Xbin/3dWilcoxon
Xbin/3dWinsor
Xbin/3dZcat
Xbin/3dZcutup
Xbin/3dZeropad
Xbin/3dZregrid
Xbin/3danisosmooth
Xbin/3daxialize
Xbin/3dbuc2fim
Xbin/3dbucket
Xbin/3dcalc
Xbin/3dclust
Xbin/3dcopy
Xbin/3ddata.h
Xbin/3ddelay
Xbin/3ddot
Xbin/3ddup
Xbin/3dedge3
Xbin/3dfim
Xbin/3dfim+
Xbin/3dfractionize
Xbin/3dhistog
Xbin/3dinfo
Xbin/3dmaskave
Xbin/3dmaskdump
Xbin/3dmaxima
Xbin/3dmerge
Xbin/3dnewid
Xbin/3dnoise
Xbin/3dnvals
Xbin/3dpc
Xbin/3dproject
Xbin/3drefit
Xbin/3drename
Xbin/3dresample
Xbin/3dretroicor
Xbin/3drotate
Xbin/3dttest
Xbin/3dvolreg
Xbin/4swap
Xbin/@4Daverage
Xbin/@AfniOrient2RAImap
Xbin/@AfniOrientSign
Xbin/@Align_Centers
Xbin/@Center_Distance
Xbin/@FromRAI
Xbin/@CheckForAfniDset
Xbin/@CommandGlobb
Xbin/@DTI_studio_reposition
Xbin/@GetAfniOrient
Xbin/@GetAfniPrefix
Xbin/@GetAfniView
Xbin/@NoExt
Xbin/@Purify_1D
Xbin/@RenamePanga
Xbin/@SUMA_AlignToExperiment
Xbin/@SUMA_Make_Spec_FS
Xbin/@SUMA_Make_Spec_SF
Xbin/@ToRAI
Xbin/@UpdateAfni
Xbin/@VolCenter
Xbin/@align_partial_oblique
Xbin/@auto_align
Xbin/@auto_tlrc
Xbin/@clip_volume
Xbin/@fix_FSsphere
Xbin/@make_stim_file
Xbin/@parse_afni_name
Xbin/@parse_name
Xbin/AlphaSim
Xbin/CompareSurfaces
Xbin/ConvertDset
Xbin/ConvertSurface
Xbin/ConvexHull
Xbin/CreateIcosahedron
Xbin/DTIStudioFibertoSegments
Xbin/Dimon
Xbin/FD2
Xbin/FSread_annot
Xbin/Ifile
Xbin/Imon
Xbin/IsoSurface
Xbin/MakeColorMap
Xbin/MapIcosahedron
Xbin/ROI2dataset
Xbin/ROIgrow
Xbin/RSFgen
Xbin/SUMA_glxdino
Xbin/SUMA_paperplane
Xbin/SUMA_pixmap2eps
Xbin/Vecwarp
Xbin/SampBias
Xbin/ScaleToMap
Xbin/SurfClust
Xbin/SurfMeasures
Xbin/SurfPatch
Xbin/SurfQual
Xbin/SurfSmooth
Xbin/SurfToSurf
Xbin/SurfaceMetrics
Xbin/Xphace
Xbin/abut
Xbin/adwarp
Xbin/afni
Xbin/afni_environ.h
Xbin/afni_vcheck
Xbin/afni_warp.h
Xbin/aiv
Xbin/byteorder
Xbin/cat_matvec
Xbin/ccalc
Xbin/cdf
Xbin/cdflib.h
Xbin/cjpeg
Xbin/count
Xbin/coxplot.h
Xbin/cs.h
Xbin/cs_sort_template.h
Xbin/dicom_hdr
Xbin/dicom_to_raw
Xbin/djpeg
Xbin/editvol.h
Xbin/eispack.h
Xbin/ent16
Xbin/f2c.h
Xbin/face_JimEliassen.jpg
Xbin/face_JohannaBaas.jpg
Xbin/face_SalloumJB.jpg
Xbin/face_ZangYF.jpg
Xbin/face_aclark.jpg
Xbin/face_adij_mannheim.jpg
Xbin/face_afniman.jpg
Xbin/face_agoldman.jpg
Xbin/face_ahammett.jpg
Xbin/face_anewmanetal.jpg
Xbin/face_anugent.jpg
Xbin/face_asanders.jpg
Xbin/face_ashackman.jpg
Xbin/face_athomas.jpg
Xbin/face_bandettini.jpg
Xbin/face_barbaracd.jpg
Xbin/face_bargall.jpg
Xbin/face_bea.jpg
Xbin/face_becky.jpg
Xbin/face_bmcnamee.jpg
Xbin/face_bodurka.jpg
Xbin/face_bprogers.jpg
Xbin/face_bridget.jpg
Xbin/face_brodmann.jpg
Xbin/face_browndyke.jpg
Xbin/face_carol.jpg
Xbin/face_cbikle.jpg
Xbin/face_claudio.jpg
Xbin/face_cmoritz.jpg
Xbin/face_cmyers.jpg
Xbin/face_csenior.jpg
Xbin/face_cwettig.jpg
Xbin/face_dglen.jpg
Xbin/face_einstein.jpg
Xbin/face_eli.jpg
Xbin/face_ernv.jpg
Xbin/face_eteoh.jpg
Xbin/face_faustalui.jpg
Xbin/face_ftam.jpg
Xbin/face_gambero.jpg
Xbin/face_gangchen.jpg
Xbin/face_gganis.jpg
Xbin/face_ggiulietti.jpg
Xbin/face_glarkin.jpg
Xbin/face_grant.jpg
Xbin/face_hanlon.jpg
Xbin/face_heekeren.jpg
Xbin/face_hoffmangobbini.jpg
Xbin/face_ibitter.jpg
Xbin/face_ilevy.jpg
Xbin/face_imukai.jpg
Xbin/fftest
Xbin/face_jbinder.jpg
Xbin/face_jbjork.jpg
Xbin/face_jchoi.jpg
Xbin/face_jigokudani.jpg
Xbin/face_jkurata.jpg
Xbin/face_jskipper.jpg
Xbin/face_jweisberg.jpg
Xbin/face_kastnerlab.jpg
Xbin/face_kebb.jpg
Xbin/face_kkwong.jpg
Xbin/face_kropella.jpg
Xbin/face_kschreiber.jpg
Xbin/face_kuba.jpg
Xbin/face_lask.jpg
Xbin/face_laura.jpg
Xbin/face_lincoln1.jpg
Xbin/face_lincoln2.jpg
Xbin/face_lindachao.jpg
Xbin/face_lizyoder.jpg
Xbin/face_ljcox.jpg
Xbin/face_llatour.jpg
Xbin/face_lmccall.jpg
Xbin/face_locikidsucsd.jpg
Xbin/face_lukas.jpg
Xbin/face_mamann.jpg
Xbin/face_maxwell.jpg
Xbin/face_mbeauchamp.jpg
Xbin/face_mbelmonte.jpg
Xbin/face_megcrew.jpg
Xbin/face_mgarolera.jpg
Xbin/face_mkenney.jpg
Xbin/face_mmaieron.jpg
Xbin/face_mmk.jpg
Xbin/face_mpinsk.jpg
Xbin/face_mruppe.jpg
Xbin/face_mscohen.jpg
Xbin/face_notspm.jpg
Xbin/face_pchristidis.jpg
Xbin/face_phoebechan.jpg
Xbin/face_prowser.jpg
Xbin/face_psfb.jpg
Xbin/face_qiulin.jpg
Xbin/face_rabeauchamp.jpg
Xbin/face_rbirn.jpg
Xbin/face_rhammett.jpg
Xbin/face_rhenderson.jpg
Xbin/face_rhoge.jpg
Xbin/face_richd.jpg
Xbin/face_rjsquirrel.jpg
Xbin/face_rprost.jpg
Xbin/face_rreynolds.jpg
Xbin/face_rwcox.jpg
Xbin/face_rwcox2.jpg
Xbin/face_rwcox3.jpg
Xbin/face_rwcox4.jpg
Xbin/face_rwcox5.jpg
Xbin/face_rwcox6.jpg
Xbin/face_sjapee.jpg
Xbin/face_saccanch.jpg
Xbin/face_skammy.jpg
Xbin/face_skapdoskar.jpg
Xbin/face_smarrett.jpg
Xbin/face_ssaad.jpg
Xbin/face_ssmall.jpg
Xbin/face_steverao.jpg
Xbin/face_tolkien.jpg
Xbin/face_vhradil.jpg
Xbin/face_vincent1.jpg
Xbin/face_vincent2.jpg
Xbin/face_vincent3.jpg
Xbin/face_vincent4.jpg
Xbin/face_vnapadow.jpg
Xbin/face_wapostman1.jpg
Xbin/face_wapostman2.jpg
Xbin/face_wmluh.jpg
Xbin/face_wpostman.jpg
Xbin/face_zsaad.jpg
Xbin/face_zzzdini.jpg
Xbin/face_zzzsunbrain.jpg
Xbin/file_tool
Xbin/fim2
Xbin/float_scan
Xbin/from3d
Xbin/ftosh
Xbin/ge_header
Xbin/im2niml
Xbin/imand
Xbin/imaver
Xbin/imcalc
Xbin/imcutup
Xbin/imdump
Xbin/immask
Xbin/imreg
Xbin/imrotate
Xbin/imstack
Xbin/imstat
Xbin/imupsam
Xbin/inspec
Xbin/killer.h
Xbin/libSUMA.a
Xbin/libcoxplot.a
Xbin/libf2c.a
Xbin/libmri.a
Xbin/libmrix.a
Xbin/libvolpack.a
Xbin/machdep.h
Xbin/mayo_analyze
Xbin/mcw_glob.h
Xbin/mcw_malloc.h
Xbin/model_beta.so
Xbin/model_constant.so
Xbin/model_convgamma.so
Xbin/model_convgamma2a.so
Xbin/model_diffexp.so
Xbin/model_diffusion.so
Xbin/model_gammavar.so
Xbin/model_linear.so
Xbin/model_null.so
Xbin/model_quadratic.so
Xbin/model_sinewave_ap.so
Xbin/model_sinewave_apf.so
Xbin/model_squarewave_ap.so
Xbin/model_squarewave_apf.so
Xbin/model_trnglwave_ap.so
Xbin/model_trnglwave_apf.so
Xbin/mpeg_encode
Xbin/mpegtoppm
Xbin/mrilib.h
Xbin/mritopgm
Xbin/multivector.h
Xbin/myget
Xbin/nicat
Xbin/nifti1_test
Xbin/nifti_stats
Xbin/nifti_tool
Xbin/niml.h
Xbin/nsize
Xbin/p2t
Xbin/plug_3Ddump_V2.so
Xbin/plug_3ddot.so
Xbin/plug_3ddup.so
Xbin/plug_4Ddump.so
Xbin/plug_L1fit.so
Xbin/plug_betafit.so
Xbin/plug_clust.so
Xbin/plug_compress.so
Xbin/plug_coorder.so
Xbin/plug_copy.so
Xbin/plug_crender.so
Xbin/plug_deconvolve.so
Xbin/plug_delay_V2.so
Xbin/plug_drawdset.so
Xbin/plug_edit.so
Xbin/plug_extract.so
Xbin/plug_fourier.so
Xbin/plug_hemisub.so
Xbin/plug_histog.so
Xbin/plug_imreg.so
Xbin/plug_lsqfit.so
Xbin/plug_maskave.so
Xbin/plug_maskcalc.so
Xbin/plug_maxima.so
Xbin/plug_nlfit.so
Xbin/plug_notes.so
Xbin/plug_nth_dataset.so
Xbin/plug_nudge.so
Xbin/rmz
Xbin/plug_permtest.so
Xbin/plug_power.so
Xbin/plug_realtime.so
Xbin/plug_rename.so
Xbin/plug_render.so
Xbin/plug_reorder.so
Xbin/plug_retroicor.so
Xbin/plug_roiedit.so
Xbin/plug_roiplot.so
Xbin/plug_scatplot.so
Xbin/plug_second_dataset.so
Xbin/plug_stats.so
Xbin/plug_stavg.so
Xbin/plug_tag.so
Xbin/plug_threshold.so
Xbin/plug_ttget.so
Xbin/plug_vol2surf.so
Xbin/plug_volreg.so
Xbin/plug_wavelets.so
Xbin/plug_zeropad.so
Xbin/plugout_drive
Xbin/plugout_ijk
Xbin/plugout_tt
Xbin/plugout_tta
Xbin/poem_bj1.txt
Xbin/poem_eapoe1.txt
Xbin/poem_em.txt
Xbin/poem_ghm3.txt
Xbin/poem_gmh1.txt
Xbin/poem_gmh2.txt
Xbin/poem_gmh3.txt
Xbin/poem_jm1.txt
Xbin/poem_pbs1.txt
Xbin/poem_pbs2.txt
Xbin/poem_rf1.txt
Xbin/poem_rk1.txt
Xbin/poem_rls1.txt
Xbin/poem_ww1.txt
Xbin/poem_ww2.txt
Xbin/qhull
Xbin/quickspec
Xbin/rotcom
Xbin/rtfeedme
Xbin/serial_helper
Xbin/sfim
Xbin/siemens_vision
Xbin/splash_bobkarl.jpg
Xbin/splash_earth.jpg
Xbin/splash_emars.jpg
Xbin/splash_kebb.jpg
Xbin/splash_marsalbor.jpg
Xbin/splash_mcw03.jpg
Xbin/splash_sscc03.jpg
Xbin/splash_vincent.jpg
Xbin/sqwave
Xbin/strblast
Xbin/suma
Xbin/suma_change_spec
Xbin/tagset.h
Xbin/tfim
Xbin/thd_compress.h
Xbin/thd_iochan.h
Xbin/thd_maker.h
Xbin/to3d
Xbin/vecmat.h
Xbin/vol2surf.h
Xbin/volpack.h
Xbin/waver
Xbin/whereami
Xbin/whirlgif
Xbin/TTatlas+tlrc.BRIK.gz
Xbin/TTatlas+tlrc.HEAD
X../../man/man1/afni.1.gz
X@dirrm bin
X@dirrm afni_doc
END-of-science/afni/pkg-plist
exit

>How-To-Repeat:
>Fix:
>Release-Note:
>Audit-Trail:
Responsible-Changed-From-To: freebsd-ports-bugs->ehaupt 
Responsible-Changed-By: ehaupt 
Responsible-Changed-When: Fri Dec 23 10:53:21 CET 2005 
Responsible-Changed-Why:  
Take. 

http://www.freebsd.org/cgi/query-pr.cgi?pr=90752 

From: Emanuel Haupt <ehaupt@FreeBSD.org>
To: bug-followup@FreeBSD.org, bacon@smithers.neuro.mcw.edu
Cc:  
Subject: Re: ports/90752: New port: science/afni Analysis of Fucntional
 NeuroImages
Date: Fri, 23 Dec 2005 11:54:21 +0100

 Hi Jason,
 
 Thanks for your submission.
 
 The port does not respect CC [1] and CFLAGS [2]. If your port needs
 gmake you need to pass CC to MAKE_ENV. distinfo should now also contain
 SHA256 checksums. You can use 'make makesum' to calculate them.
 Attention, using distfile names without a version in it are generally
 dangerous, once you re-roll the tarball or update them the port will
 fail due to a checksum mismatch.
 
 Finally please install portlint (devel/portlint) and run it with the
 '-A' option and eradicate the fatal warnings.
 
 [1] http://www.freebsd.org/doc/en_US.ISO8859-1/books/porters-handbook/dads-cc.html
 [2] http://www.freebsd.org/doc/en_US.ISO8859-1/books/porters-handbook/dads-cflags.html
 
 Thanks in advance,
 Emanuel
 
 -- 
 GnuPG key id: 0x55E67774         Download: http://pgp.mit.edu:11371
 Key fingerprint: 17B3 FD8F BA68 4AB4 10FD  A9D1 AD52 6588 55E6 7774
State-Changed-From-To: open->feedback 
State-Changed-By: ehaupt 
State-Changed-When: Fri Dec 23 14:40:27 CET 2005 
State-Changed-Why:  
Ask for maintainer fix. 

http://www.freebsd.org/cgi/query-pr.cgi?pr=90752 

From: Jason Bacon <jbacon@mcw.edu>
To: Emanuel Haupt <ehaupt@FreeBSD.org>
Cc: bug-followup@FreeBSD.org
Subject: Re: ports/90752: New port: science/afni Analysis of Fucntional NeuroImages
Date: Sat, 24 Dec 2005 19:46:50 -0600

 --Boundary-00=_LofrD7l6fjyx9TS
 Content-Type: text/plain;
   charset="iso-8859-1"
 Content-Transfer-Encoding: 7bit
 Content-Disposition: inline
 
 
 Hello Emanuel,
 
 Thanks for the quick feedback.  Bear with me here - I'm just getting familiar 
 with the internals of ports system, and this has proven to be a tricky port.  
 The new shar is attached.  Please see my responses below.
 
 > The port does not respect CC [1] and CFLAGS [2]. 
 
 I assume you're referring to Makefile.BSD here, which I've updated to respect 
 CC.  This is the only thing in the AFNI distribution that I can tamper with, 
 and it must be maintained in a format usable outside the FreeBSD ports system 
 for those who choose to build manually.  Note that most of the work in 
 building AFNI is done by Makefile.INCLUDE, the universal portion of the AFNI 
 make setup that Makefile.BSD, et. al. set the environment for.  It ignores 
 CFLAGS entirely, and suggesting any changes to it is not likely to be 
 fruitful, so I had to tack flags directly onto CC in Makefile.BSD.  This may 
 seem a little kludgey, but I don't see a better solution at the moment.
 
 > If your port needs 
 > gmake you need to pass CC to MAKE_ENV. 
 
 Added this to the port Makefile.
 
 > distinfo should now also contain 
 > SHA256 checksums. You can use 'make makesum' to calculate them.
 
 Had already done that.  Did you run into checksum problems?
 
 > Attention, using distfile names without a version in it are generally
 > dangerous, once you re-roll the tarball or update them the port will
 > fail due to a checksum mismatch.
 
 I'd already thought of this, but I'm not sure what the best solution would be.  
 
 I doubt the author of AFNI will want to start adding version numbers on his 
 site.  I *could* remove it from MASTER_SITES and list only my own copy, with 
 version numbers added.  Would it be acceptable not having the original 
 download site in MASTER_SITES?
 
 > Finally please install portlint (devel/portlint) and run it with the
 > '-A' option and eradicate the fatal warnings.
 
 Done.
 
 Happy holidays,
 
 	Jason
 
 -- 
 Jason W. Bacon
 Systems Manager, fMRI Research Labs
 Medical College of Wisconsin
 8701 Watertown Plank Rd
 Room MFRC 4037
 Milwaukee, WI 53226
 (414) 456-5881
 (414) 456-6562 FAX
 
 --Boundary-00=_LofrD7l6fjyx9TS
 Content-Type: text/plain;
   charset="iso-8859-1";
   name="afni.tree"
 Content-Transfer-Encoding: 7bit
 Content-Disposition: attachment;
 	filename="afni.tree"
 
 # This is a shell archive.  Save it in a file, remove anything before
 # this line, and then unpack it by entering "sh file".  Note, it may
 # create directories; files and directories will be owned by you and
 # have default permissions.
 #
 # This archive contains:
 #
 #	science/afni
 #	science/afni/Makefile
 #	science/afni/pkg-descr
 #	science/afni/distinfo
 #	science/afni/pkg-message
 #	science/afni/pkg-plist
 #
 echo c - science/afni
 mkdir -p science/afni > /dev/null 2>&1
 echo x - science/afni/Makefile
 sed 's/^X//' >science/afni/Makefile << 'END-of-science/afni/Makefile'
 X############################################################################
 X# New ports collection Makefile for:   afni
 X# Date created:        11 Jan 2005
 X# Whom:                jbacon
 X#
 X# $FreeBSD$
 X#
 X
 X############################################################################
 X# www.neuro.mcw.edu has the latest source distribution from which this port
 X# is built.  It will be updated as time permits and necessiaty requires.
 X#
 X# afni.nimh.nih.gov is the ultimate source for AFNI, and will always
 X# contain the latest source release.  If this port is not up to date,
 X# you can download the latest sources and build manually using
 X# Makefile.BSD, which is included in the source distribution.  If the
 X# Makefile.BSD in the afni source distribution is out of date, as
 X# occasionally happens, you can download the latest from www.neuro.mcw.edu.
 X# I regularly submit updates to NIH, but it sometimes takes a while for them
 X# to get into the distribution.
 X
 XPORTNAME=	afni
 XPORTVERSION=	2005.11.18.1920
 XCATEGORIES=	science graphics biology
 XMASTER_SITES=	http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/ \
 X		http://afni.nimh.nih.gov/pub/dist/tgz/
 XDISTFILES=	afni_src.tgz afni_doc.tgz afni.1 \
 X		Makefile.BSD TTatlas+tlrc.BRIK.gz TTatlas+tlrc.HEAD
 XDIST_SUBDIR=	AFNI
 XEXTRACT_ONLY=	afni_src.tgz afni_doc.tgz
 X
 XMAINTAINER=	jbacon@mcw.edu
 XCOMMENT=	Advanced Functional Neuro Imaging
 X
 XLIB_DEPENDS=	Xm.3:${PORTSDIR}/x11-toolkits/open-motif
 X
 XUSE_GMAKE=	yes
 XMAKE_ENV=	CC="${CC}"
 XMAN1=		afni.1
 X
 X# Build parameters
 XWRKSRC=		${WRKDIR}/afni_src
 XMAKEFILE=	Makefile.BSD
 XALL_TARGET=	vastness suma
 X
 X# Install parameters
 XSTRIP=
 XPREFIX=		${LOCALBASE}/mri/afni
 XMANCOMPRESSED=	yes
 XNO_MTREE=	yes
 X
 Xpost-extract:
 X	${CP} -f ${DISTDIR}/${DIST_SUBDIR}/Makefile.BSD ${WRKSRC}
 X
 Xdo-install:
 X	${MKDIR} ${PREFIX}/bin ${PREFIX}/afni_doc
 X	${INSTALL_PROGRAM} ${WRKSRC}/BSD/* ${PREFIX}/bin
 X	${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/TTatlas* ${PREFIX}/bin
 X	${INSTALL_MAN} ${WRKDIR}/afni_doc/* ${PREFIX}/afni_doc
 X	${INSTALL_MAN} ${DISTDIR}/${DIST_SUBDIR}/afni.1 ${LOCALBASE}/man/man1
 X	${GZIP_CMD} ${LOCALBASE}/man/man1/afni.1
 X
 Xpost-install:
 X	${CAT} pkg-message
 X
 X.include <bsd.port.mk>
 END-of-science/afni/Makefile
 echo x - science/afni/pkg-descr
 sed 's/^X//' >science/afni/pkg-descr << 'END-of-science/afni/pkg-descr'
 XThis is a port of afni, Advanced Functional Neuro Imaging
 X
 XWWW: http://www.neuro.mcw.edu/~bacon
 X
 X- Jason
 Xjbacon@mcw.edu
 END-of-science/afni/pkg-descr
 echo x - science/afni/distinfo
 sed 's/^X//' >science/afni/distinfo << 'END-of-science/afni/distinfo'
 XMD5 (AFNI/afni_src.tgz) = 8f118f55721573feee6efa7bfff64456
 XSIZE (AFNI/afni_src.tgz) = 10481603
 XMD5 (AFNI/afni_doc.tgz) = 3b085de85fc46908652ae287d1cceb38
 XSIZE (AFNI/afni_doc.tgz) = 3267095
 XMD5 (AFNI/afni.1) = 39c9a1a39b207cd957f0f0d5ec220e4e
 XSIZE (AFNI/afni.1) = 1103
 XMD5 (AFNI/Makefile.BSD) = c18d1044cb32808dbf2274ef6ad5b567
 XSIZE (AFNI/Makefile.BSD) = 3646
 XMD5 (AFNI/TTatlas+tlrc.BRIK.gz) = f5a107b049bc426af5342565f4e5beee
 XSIZE (AFNI/TTatlas+tlrc.BRIK.gz) = 159912
 XMD5 (AFNI/TTatlas+tlrc.HEAD) = a0ca787a2996d7e66548176808503ac5
 XSIZE (AFNI/TTatlas+tlrc.HEAD) = 1750
 END-of-science/afni/distinfo
 echo x - science/afni/pkg-message
 sed 's/^X//' >science/afni/pkg-message << 'END-of-science/afni/pkg-message'
 X
 X=============================================================================
 XUsers will need to have ${PREFIX}/bin in their PATH in order
 Xto run programs in the AFNI distribution.
 X
 XDocumentation can be found in ${PREFIX}/afni_doc.
 X
 XThe environment AFNI_PLUGIN_PATH must also be set to the bin directory
 Xin order to run AFNI plugins.
 X
 XEach user is advised to create a .afnirc file in their home directory
 Xto customize settings.
 X
 XFor questions or comments regarding this port, please contact the
 Xport maintainer: jbacon@mcw.edu
 X
 XFor AFNI usage, please visit the AFNI WEB site at http://afni.nimh.nih.gov.
 X=============================================================================
 END-of-science/afni/pkg-message
 echo x - science/afni/pkg-plist
 sed 's/^X//' >science/afni/pkg-plist << 'END-of-science/afni/pkg-plist'
 Xafni_doc/1dplot.ps
 Xafni_doc/24swap.ps
 Xafni_doc/2dImReg.ps
 Xafni_doc/2swap.ps
 Xafni_doc/3T_toafni.ps
 Xafni_doc/3dANOVA.ps
 Xafni_doc/3dANOVA2.ps
 Xafni_doc/3dANOVA3.ps
 Xafni_doc/3dDeconvolve.ps
 Xafni_doc/3dExtrema.ps
 Xafni_doc/3dFDR.ps
 Xafni_doc/3dFWHM.ps
 Xafni_doc/3dFriedman.ps
 Xafni_doc/3dIntracranial.ps
 Xafni_doc/3dKruskalWallis.ps
 Xafni_doc/3dMannWhitney.ps
 Xafni_doc/3dNLfim.ps
 Xafni_doc/3dRegAna.ps
 Xafni_doc/3dStatClust.ps
 Xafni_doc/3dTSgen.ps
 Xafni_doc/3dTcat.ps
 Xafni_doc/3dTsmooth.ps
 Xafni_doc/3dWavelets.ps
 Xafni_doc/3dWilcoxon.ps
 Xafni_doc/3daxialize.ps
 Xafni_doc/3dbuc2fim.ps
 Xafni_doc/3dbucket.ps
 Xafni_doc/3dcalc.ps
 Xafni_doc/3dclust.ps
 Xafni_doc/3dcolon.ps
 Xafni_doc/3ddup.ps
 Xafni_doc/3dfim+.ps
 Xafni_doc/3dfim.ps
 Xafni_doc/3dfractionize.ps
 Xafni_doc/3dhistog.ps
 Xafni_doc/3dinfo.ps
 Xafni_doc/3dmaskave.ps
 Xafni_doc/3dmerge.ps
 Xafni_doc/3dnewid.ps
 Xafni_doc/3dnoise.ps
 Xafni_doc/3dnvals.ps
 Xafni_doc/3dpc.ps
 Xafni_doc/3dproject.ps
 Xafni_doc/3drefit.ps
 Xafni_doc/3drotate.ps
 Xafni_doc/3dttest.ps
 Xafni_doc/3dvolreg.ps
 Xafni_doc/4swap.ps
 Xafni_doc/AFNI.changes.cox
 Xafni_doc/AFNI.changes.rhammett
 Xafni_doc/AFNI.changes.rickr
 Xafni_doc/AlphaSim.ps
 Xafni_doc/AlphaSim_fig.ps
 Xafni_doc/FD2.ps
 Xafni_doc/Nonparametric.ps
 Xafni_doc/README
 Xafni_doc/README.Ifile
 Xafni_doc/README.attributes
 Xafni_doc/README.bzip2
 Xafni_doc/README.changes
 Xafni_doc/README.compression
 Xafni_doc/README.copyright
 Xafni_doc/README.driver
 Xafni_doc/README.environment
 Xafni_doc/README.func_types
 Xafni_doc/README.notes
 Xafni_doc/README.roi
 Xafni_doc/README.permtest
 Xafni_doc/README.plugouts
 Xafni_doc/README.realtime
 Xafni_doc/README.registration
 Xafni_doc/README.render_scripts
 Xafni_doc/README.setup
 Xafni_doc/README.volreg
 Xafni_doc/README.web
 Xafni_doc/README.ziad
 Xafni_doc/RSFgen.ps
 Xafni_doc/Table.ps
 Xafni_doc/abut.ps
 Xafni_doc/adwarp.ps
 Xafni_doc/afni200.ps
 Xafni_doc/afni_aux.ps
 Xafni_doc/afni_plugins.ps
 Xafni_doc/afni_register.ps
 Xafni_doc/buckets.ps
 Xafni_doc/byteorder.ps
 Xafni_doc/ccalc.ps
 Xafni_doc/cdf.ps
 Xafni_doc/count.ps
 Xafni_doc/fim2.ps
 Xafni_doc/float_scan.ps
 Xafni_doc/from3d.ps
 Xafni_doc/ftosh.ps
 Xafni_doc/imand.ps
 Xafni_doc/imaver.ps
 Xafni_doc/imcalc.ps
 Xafni_doc/imdump.ps
 Xafni_doc/immask.ps
 Xafni_doc/imreg.ps
 Xafni_doc/imrotate.ps
 Xafni_doc/imstack.ps
 Xafni_doc/imstat.ps
 Xafni_doc/imupsam.ps
 Xafni_doc/mritopgm.ps
 Xafni_doc/nsize.ps
 Xafni_doc/p2t.ps
 Xafni_doc/sfim.ps
 Xafni_doc/sqwave.ps
 Xafni_doc/tfim.ps
 Xafni_doc/to3d.ps
 Xafni_doc/waver.ps
 Xbin/1dcat
 Xbin/1ddot
 Xbin/1deval
 Xbin/1dfft
 Xbin/1dgrayplot
 Xbin/1dnorm
 Xbin/1dplot
 Xbin/1dsum
 Xbin/1dsvd
 Xbin/1dtranspose
 Xbin/24swap
 Xbin/2dImReg
 Xbin/2swap
 Xbin/3T_toafni
 Xbin/3dAFNIto3D
 Xbin/3dAFNItoANALYZE
 Xbin/3dAFNItoMINC
 Xbin/3dAFNItoNIFTI
 Xbin/3dAFNItoNIML
 Xbin/3dAFNItoRaw
 Xbin/3dANALYZEtoAFNI
 Xbin/3dANOVA
 Xbin/3dANOVA2
 Xbin/3dANOVA3
 Xbin/3dAnatNudge
 Xbin/3dCM
 Xbin/3dAnhist
 Xbin/3dAttribute
 Xbin/3dAutoTcorrelate
 Xbin/3dAutobox
 Xbin/3dAutomask
 Xbin/3dBRAIN_VOYAGERtoAFNI
 Xbin/3dCRUISEtoAFNI
 Xbin/3dClipLevel
 Xbin/3dConvolve
 Xbin/3dDTeig
 Xbin/3dDWItoDT
 Xbin/3dDeconvolve
 Xbin/3dDeconvolve_f
 Xbin/3dDespike
 Xbin/3dDetrend
 Xbin/3dEntropy
 Xbin/3dExtrema
 Xbin/3dFDR
 Xbin/3dFWHM
 Xbin/3dFourier
 Xbin/3dFriedman
 Xbin/3dIntracranial
 Xbin/3dKruskalWallis
 Xbin/3dLRflip
 Xbin/3dLocalstat
 Xbin/3dMINCtoAFNI
 Xbin/3dMannWhitney
 Xbin/3dMax
 Xbin/3dMean
 Xbin/3dMedianFilter
 Xbin/3dNLfim
 Xbin/3dNotes
 Xbin/3dOverlap
 Xbin/3dROIstats
 Xbin/3dRegAna
 Xbin/3dRowFillin
 Xbin/3dSkullStrip
 Xbin/3dSpatNorm
 Xbin/3dStatClust
 Xbin/3dSurf2Vol
 Xbin/3dSurfMask
 Xbin/3dTSgen
 Xbin/3dTagalign
 Xbin/3dTcat
 Xbin/3dTcorrelate
 Xbin/3dThreetoRGB
 Xbin/3dToutcount
 Xbin/3dTqual
 Xbin/3dTshift
 Xbin/3dTstat
 Xbin/3dTsmooth
 Xbin/3dUndump
 Xbin/3dUniformize
 Xbin/3dVol2Surf
 Xbin/3dWarp
 Xbin/3dWarpDrive
 Xbin/3dWavelets
 Xbin/3dWilcoxon
 Xbin/3dWinsor
 Xbin/3dZcat
 Xbin/3dZcutup
 Xbin/3dZeropad
 Xbin/3dZregrid
 Xbin/3danisosmooth
 Xbin/3daxialize
 Xbin/3dbuc2fim
 Xbin/3dbucket
 Xbin/3dcalc
 Xbin/3dclust
 Xbin/3dcopy
 Xbin/3ddata.h
 Xbin/3ddelay
 Xbin/3ddot
 Xbin/3ddup
 Xbin/3dedge3
 Xbin/3dfim
 Xbin/3dfim+
 Xbin/3dfractionize
 Xbin/3dhistog
 Xbin/3dinfo
 Xbin/3dmaskave
 Xbin/3dmaskdump
 Xbin/3dmaxima
 Xbin/3dmerge
 Xbin/3dnewid
 Xbin/3dnoise
 Xbin/3dnvals
 Xbin/3dpc
 Xbin/3dproject
 Xbin/3drefit
 Xbin/3drename
 Xbin/3dresample
 Xbin/3dretroicor
 Xbin/3drotate
 Xbin/3dttest
 Xbin/3dvolreg
 Xbin/4swap
 Xbin/@4Daverage
 Xbin/@AfniOrient2RAImap
 Xbin/@AfniOrientSign
 Xbin/@Align_Centers
 Xbin/@Center_Distance
 Xbin/@FromRAI
 Xbin/@CheckForAfniDset
 Xbin/@CommandGlobb
 Xbin/@DTI_studio_reposition
 Xbin/@GetAfniOrient
 Xbin/@GetAfniPrefix
 Xbin/@GetAfniView
 Xbin/@NoExt
 Xbin/@Purify_1D
 Xbin/@RenamePanga
 Xbin/@SUMA_AlignToExperiment
 Xbin/@SUMA_Make_Spec_FS
 Xbin/@SUMA_Make_Spec_SF
 Xbin/@ToRAI
 Xbin/@UpdateAfni
 Xbin/@VolCenter
 Xbin/@align_partial_oblique
 Xbin/@auto_align
 Xbin/@auto_tlrc
 Xbin/@clip_volume
 Xbin/@fix_FSsphere
 Xbin/@make_stim_file
 Xbin/@parse_afni_name
 Xbin/@parse_name
 Xbin/AlphaSim
 Xbin/CompareSurfaces
 Xbin/ConvertDset
 Xbin/ConvertSurface
 Xbin/ConvexHull
 Xbin/CreateIcosahedron
 Xbin/DTIStudioFibertoSegments
 Xbin/Dimon
 Xbin/FD2
 Xbin/FSread_annot
 Xbin/Ifile
 Xbin/Imon
 Xbin/IsoSurface
 Xbin/MakeColorMap
 Xbin/MapIcosahedron
 Xbin/ROI2dataset
 Xbin/ROIgrow
 Xbin/RSFgen
 Xbin/SUMA_glxdino
 Xbin/SUMA_paperplane
 Xbin/SUMA_pixmap2eps
 Xbin/Vecwarp
 Xbin/SampBias
 Xbin/ScaleToMap
 Xbin/SurfClust
 Xbin/SurfMeasures
 Xbin/SurfPatch
 Xbin/SurfQual
 Xbin/SurfSmooth
 Xbin/SurfToSurf
 Xbin/SurfaceMetrics
 Xbin/Xphace
 Xbin/abut
 Xbin/adwarp
 Xbin/afni
 Xbin/afni_environ.h
 Xbin/afni_vcheck
 Xbin/afni_warp.h
 Xbin/aiv
 Xbin/byteorder
 Xbin/cat_matvec
 Xbin/ccalc
 Xbin/cdf
 Xbin/cdflib.h
 Xbin/cjpeg
 Xbin/count
 Xbin/coxplot.h
 Xbin/cs.h
 Xbin/cs_sort_template.h
 Xbin/dicom_hdr
 Xbin/dicom_to_raw
 Xbin/djpeg
 Xbin/editvol.h
 Xbin/eispack.h
 Xbin/ent16
 Xbin/f2c.h
 Xbin/face_JimEliassen.jpg
 Xbin/face_JohannaBaas.jpg
 Xbin/face_SalloumJB.jpg
 Xbin/face_ZangYF.jpg
 Xbin/face_aclark.jpg
 Xbin/face_adij_mannheim.jpg
 Xbin/face_afniman.jpg
 Xbin/face_agoldman.jpg
 Xbin/face_ahammett.jpg
 Xbin/face_anewmanetal.jpg
 Xbin/face_anugent.jpg
 Xbin/face_asanders.jpg
 Xbin/face_ashackman.jpg
 Xbin/face_athomas.jpg
 Xbin/face_bandettini.jpg
 Xbin/face_barbaracd.jpg
 Xbin/face_bargall.jpg
 Xbin/face_bea.jpg
 Xbin/face_becky.jpg
 Xbin/face_bmcnamee.jpg
 Xbin/face_bodurka.jpg
 Xbin/face_bprogers.jpg
 Xbin/face_bridget.jpg
 Xbin/face_brodmann.jpg
 Xbin/face_browndyke.jpg
 Xbin/face_carol.jpg
 Xbin/face_cbikle.jpg
 Xbin/face_claudio.jpg
 Xbin/face_cmoritz.jpg
 Xbin/face_cmyers.jpg
 Xbin/face_csenior.jpg
 Xbin/face_cwettig.jpg
 Xbin/face_dglen.jpg
 Xbin/face_einstein.jpg
 Xbin/face_eli.jpg
 Xbin/face_ernv.jpg
 Xbin/face_eteoh.jpg
 Xbin/face_faustalui.jpg
 Xbin/face_ftam.jpg
 Xbin/face_gambero.jpg
 Xbin/face_gangchen.jpg
 Xbin/face_gganis.jpg
 Xbin/face_ggiulietti.jpg
 Xbin/face_glarkin.jpg
 Xbin/face_grant.jpg
 Xbin/face_hanlon.jpg
 Xbin/face_heekeren.jpg
 Xbin/face_hoffmangobbini.jpg
 Xbin/face_ibitter.jpg
 Xbin/face_ilevy.jpg
 Xbin/face_imukai.jpg
 Xbin/fftest
 Xbin/face_jbinder.jpg
 Xbin/face_jbjork.jpg
 Xbin/face_jchoi.jpg
 Xbin/face_jigokudani.jpg
 Xbin/face_jkurata.jpg
 Xbin/face_jskipper.jpg
 Xbin/face_jweisberg.jpg
 Xbin/face_kastnerlab.jpg
 Xbin/face_kebb.jpg
 Xbin/face_kkwong.jpg
 Xbin/face_kropella.jpg
 Xbin/face_kschreiber.jpg
 Xbin/face_kuba.jpg
 Xbin/face_lask.jpg
 Xbin/face_laura.jpg
 Xbin/face_lincoln1.jpg
 Xbin/face_lincoln2.jpg
 Xbin/face_lindachao.jpg
 Xbin/face_lizyoder.jpg
 Xbin/face_ljcox.jpg
 Xbin/face_llatour.jpg
 Xbin/face_lmccall.jpg
 Xbin/face_locikidsucsd.jpg
 Xbin/face_lukas.jpg
 Xbin/face_mamann.jpg
 Xbin/face_maxwell.jpg
 Xbin/face_mbeauchamp.jpg
 Xbin/face_mbelmonte.jpg
 Xbin/face_megcrew.jpg
 Xbin/face_mgarolera.jpg
 Xbin/face_mkenney.jpg
 Xbin/face_mmaieron.jpg
 Xbin/face_mmk.jpg
 Xbin/face_mpinsk.jpg
 Xbin/face_mruppe.jpg
 Xbin/face_mscohen.jpg
 Xbin/face_notspm.jpg
 Xbin/face_pchristidis.jpg
 Xbin/face_phoebechan.jpg
 Xbin/face_prowser.jpg
 Xbin/face_psfb.jpg
 Xbin/face_qiulin.jpg
 Xbin/face_rabeauchamp.jpg
 Xbin/face_rbirn.jpg
 Xbin/face_rhammett.jpg
 Xbin/face_rhenderson.jpg
 Xbin/face_rhoge.jpg
 Xbin/face_richd.jpg
 Xbin/face_rjsquirrel.jpg
 Xbin/face_rprost.jpg
 Xbin/face_rreynolds.jpg
 Xbin/face_rwcox.jpg
 Xbin/face_rwcox2.jpg
 Xbin/face_rwcox3.jpg
 Xbin/face_rwcox4.jpg
 Xbin/face_rwcox5.jpg
 Xbin/face_rwcox6.jpg
 Xbin/face_sjapee.jpg
 Xbin/face_saccanch.jpg
 Xbin/face_skammy.jpg
 Xbin/face_skapdoskar.jpg
 Xbin/face_smarrett.jpg
 Xbin/face_ssaad.jpg
 Xbin/face_ssmall.jpg
 Xbin/face_steverao.jpg
 Xbin/face_tolkien.jpg
 Xbin/face_vhradil.jpg
 Xbin/face_vincent1.jpg
 Xbin/face_vincent2.jpg
 Xbin/face_vincent3.jpg
 Xbin/face_vincent4.jpg
 Xbin/face_vnapadow.jpg
 Xbin/face_wapostman1.jpg
 Xbin/face_wapostman2.jpg
 Xbin/face_wmluh.jpg
 Xbin/face_wpostman.jpg
 Xbin/face_zsaad.jpg
 Xbin/face_zzzdini.jpg
 Xbin/face_zzzsunbrain.jpg
 Xbin/file_tool
 Xbin/fim2
 Xbin/float_scan
 Xbin/from3d
 Xbin/ftosh
 Xbin/ge_header
 Xbin/im2niml
 Xbin/imand
 Xbin/imaver
 Xbin/imcalc
 Xbin/imcutup
 Xbin/imdump
 Xbin/immask
 Xbin/imreg
 Xbin/imrotate
 Xbin/imstack
 Xbin/imstat
 Xbin/imupsam
 Xbin/inspec
 Xbin/killer.h
 Xbin/libSUMA.a
 Xbin/libcoxplot.a
 Xbin/libf2c.a
 Xbin/libmri.a
 Xbin/libmrix.a
 Xbin/libvolpack.a
 Xbin/machdep.h
 Xbin/mayo_analyze
 Xbin/mcw_glob.h
 Xbin/mcw_malloc.h
 Xbin/model_beta.so
 Xbin/model_constant.so
 Xbin/model_convgamma.so
 Xbin/model_convgamma2a.so
 Xbin/model_diffexp.so
 Xbin/model_diffusion.so
 Xbin/model_gammavar.so
 Xbin/model_linear.so
 Xbin/model_null.so
 Xbin/model_quadratic.so
 Xbin/model_sinewave_ap.so
 Xbin/model_sinewave_apf.so
 Xbin/model_squarewave_ap.so
 Xbin/model_squarewave_apf.so
 Xbin/model_trnglwave_ap.so
 Xbin/model_trnglwave_apf.so
 Xbin/mpeg_encode
 Xbin/mpegtoppm
 Xbin/mrilib.h
 Xbin/mritopgm
 Xbin/multivector.h
 Xbin/myget
 Xbin/nicat
 Xbin/nifti1_test
 Xbin/nifti_stats
 Xbin/nifti_tool
 Xbin/niml.h
 Xbin/nsize
 Xbin/p2t
 Xbin/plug_3Ddump_V2.so
 Xbin/plug_3ddot.so
 Xbin/plug_3ddup.so
 Xbin/plug_4Ddump.so
 Xbin/plug_L1fit.so
 Xbin/plug_betafit.so
 Xbin/plug_clust.so
 Xbin/plug_compress.so
 Xbin/plug_coorder.so
 Xbin/plug_copy.so
 Xbin/plug_crender.so
 Xbin/plug_deconvolve.so
 Xbin/plug_delay_V2.so
 Xbin/plug_drawdset.so
 Xbin/plug_edit.so
 Xbin/plug_extract.so
 Xbin/plug_fourier.so
 Xbin/plug_hemisub.so
 Xbin/plug_histog.so
 Xbin/plug_imreg.so
 Xbin/plug_lsqfit.so
 Xbin/plug_maskave.so
 Xbin/plug_maskcalc.so
 Xbin/plug_maxima.so
 Xbin/plug_nlfit.so
 Xbin/plug_notes.so
 Xbin/plug_nth_dataset.so
 Xbin/plug_nudge.so
 Xbin/rmz
 Xbin/plug_permtest.so
 Xbin/plug_power.so
 Xbin/plug_realtime.so
 Xbin/plug_rename.so
 Xbin/plug_render.so
 Xbin/plug_reorder.so
 Xbin/plug_retroicor.so
 Xbin/plug_roiedit.so
 Xbin/plug_roiplot.so
 Xbin/plug_scatplot.so
 Xbin/plug_second_dataset.so
 Xbin/plug_stats.so
 Xbin/plug_stavg.so
 Xbin/plug_tag.so
 Xbin/plug_threshold.so
 Xbin/plug_ttget.so
 Xbin/plug_vol2surf.so
 Xbin/plug_volreg.so
 Xbin/plug_wavelets.so
 Xbin/plug_zeropad.so
 Xbin/plugout_drive
 Xbin/plugout_ijk
 Xbin/plugout_tt
 Xbin/plugout_tta
 Xbin/poem_bj1.txt
 Xbin/poem_eapoe1.txt
 Xbin/poem_em.txt
 Xbin/poem_ghm3.txt
 Xbin/poem_gmh1.txt
 Xbin/poem_gmh2.txt
 Xbin/poem_gmh3.txt
 Xbin/poem_jm1.txt
 Xbin/poem_pbs1.txt
 Xbin/poem_pbs2.txt
 Xbin/poem_rf1.txt
 Xbin/poem_rk1.txt
 Xbin/poem_rls1.txt
 Xbin/poem_ww1.txt
 Xbin/poem_ww2.txt
 Xbin/qhull
 Xbin/quickspec
 Xbin/rotcom
 Xbin/rtfeedme
 Xbin/serial_helper
 Xbin/sfim
 Xbin/siemens_vision
 Xbin/splash_bobkarl.jpg
 Xbin/splash_earth.jpg
 Xbin/splash_emars.jpg
 Xbin/splash_kebb.jpg
 Xbin/splash_marsalbor.jpg
 Xbin/splash_mcw03.jpg
 Xbin/splash_sscc03.jpg
 Xbin/splash_vincent.jpg
 Xbin/sqwave
 Xbin/strblast
 Xbin/suma
 Xbin/suma_change_spec
 Xbin/tagset.h
 Xbin/tfim
 Xbin/thd_compress.h
 Xbin/thd_iochan.h
 Xbin/thd_maker.h
 Xbin/to3d
 Xbin/vecmat.h
 Xbin/vol2surf.h
 Xbin/volpack.h
 Xbin/waver
 Xbin/whereami
 Xbin/whirlgif
 Xbin/TTatlas+tlrc.BRIK.gz
 Xbin/TTatlas+tlrc.HEAD
 X@dirrm bin
 X@dirrm afni_doc
 END-of-science/afni/pkg-plist
 exit
 
 
 --Boundary-00=_LofrD7l6fjyx9TS--

From: Jason Bacon <jbacon@mcw.edu>
To: Emanuel Haupt <ehaupt@FreeBSD.org>
Cc: bug-followup@FreeBSD.org, bacon@smithers.neuro.mcw.edu
Subject: Re: ports/90752: New port: science/afni Analysis of Fucntional NeuroImages
Date: Sun, 25 Dec 2005 17:11:47 -0600

 --Boundary-00=_0cyrD0ObHn8JQAP
 Content-Type: text/plain;
   charset="iso-8859-1"
 Content-Transfer-Encoding: 7bit
 Content-Disposition: inline
 
 
 Sorry to inundate your inbox, but there was one more tweak necessary to 
 complete the build.  Please replace the previous shar file with this one.
 
 Cheers,
 
 	Jason
 
 On Friday 23 December 2005 04:54, Emanuel Haupt wrote:
 > Hi Jason,
 >
 > Thanks for your submission.
 >
 > The port does not respect CC [1] and CFLAGS [2]. If your port needs
 > gmake you need to pass CC to MAKE_ENV. distinfo should now also contain
 > SHA256 checksums. You can use 'make makesum' to calculate them.
 > Attention, using distfile names without a version in it are generally
 > dangerous, once you re-roll the tarball or update them the port will
 > fail due to a checksum mismatch.
 >
 > Finally please install portlint (devel/portlint) and run it with the
 > '-A' option and eradicate the fatal warnings.
 >
 > [1]
 > http://www.freebsd.org/doc/en_US.ISO8859-1/books/porters-handbook/dads-cc.h
 >tml [2]
 > http://www.freebsd.org/doc/en_US.ISO8859-1/books/porters-handbook/dads-cfla
 >gs.html
 >
 > Thanks in advance,
 > Emanuel
 
 -- 
 Jason W. Bacon
 Systems Manager, fMRI Research Labs
 Medical College of Wisconsin
 8701 Watertown Plank Rd
 Room MFRC 4037
 Milwaukee, WI 53226
 (414) 456-5881
 (414) 456-6562 FAX
 
 --Boundary-00=_0cyrD0ObHn8JQAP
 Content-Type: text/plain;
   charset="iso-8859-1";
   name="afni.tree"
 Content-Transfer-Encoding: 7bit
 Content-Disposition: attachment;
 	filename="afni.tree"
 
 # This is a shell archive.  Save it in a file, remove anything before
 # this line, and then unpack it by entering "sh file".  Note, it may
 # create directories; files and directories will be owned by you and
 # have default permissions.
 #
 # This archive contains:
 #
 #	science/afni
 #	science/afni/Makefile
 #	science/afni/pkg-descr
 #	science/afni/distinfo
 #	science/afni/pkg-message
 #	science/afni/pkg-plist
 #
 echo c - science/afni
 mkdir -p science/afni > /dev/null 2>&1
 echo x - science/afni/Makefile
 sed 's/^X//' >science/afni/Makefile << 'END-of-science/afni/Makefile'
 X############################################################################
 X# New ports collection Makefile for:   afni
 X# Date created:        11 Jan 2005
 X# Whom:                jbacon
 X#
 X# $FreeBSD$
 X#
 X
 X############################################################################
 X# www.neuro.mcw.edu has the latest source distribution from which this port
 X# is built.  It will be updated as time permits and necessiaty requires.
 X#
 X# afni.nimh.nih.gov is the ultimate source for AFNI, and will always
 X# contain the latest source release.  If this port is not up to date,
 X# you can download the latest sources and build manually using
 X# Makefile.BSD, which is included in the source distribution.  If the
 X# Makefile.BSD in the afni source distribution is out of date, as
 X# occasionally happens, you can download the latest from www.neuro.mcw.edu.
 X# I regularly submit updates to NIH, but it sometimes takes a while for them
 X# to get into the distribution.
 X
 XPORTNAME=	afni
 XPORTVERSION=	2005.11.18.1920
 XCATEGORIES=	science graphics biology
 XMASTER_SITES=	http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/ \
 X		http://afni.nimh.nih.gov/pub/dist/tgz/
 XDISTFILES=	afni_src.tgz afni_doc.tgz afni.1 \
 X		Makefile.BSD TTatlas+tlrc.BRIK.gz TTatlas+tlrc.HEAD
 XDIST_SUBDIR=	AFNI
 XEXTRACT_ONLY=	afni_src.tgz afni_doc.tgz
 X
 XMAINTAINER=	jbacon@mcw.edu
 XCOMMENT=	Advanced Functional Neuro Imaging
 X
 XLIB_DEPENDS=	Xm.3:${PORTSDIR}/x11-toolkits/open-motif
 X
 XUSE_GMAKE=	yes
 XMAKE_ENV=	CC="${CC}"
 XMAN1=		afni.1
 X
 X# Build parameters
 XWRKSRC=		${WRKDIR}/afni_src
 XMAKEFILE=	Makefile.BSD
 XALL_TARGET=	vastness suma
 X
 X# Install parameters
 XSTRIP=
 XPREFIX=		${LOCALBASE}/mri/afni
 XMANCOMPRESSED=	yes
 XNO_MTREE=	yes
 X
 Xpost-extract:
 X	${CP} -f ${DISTDIR}/${DIST_SUBDIR}/Makefile.BSD ${WRKSRC}
 X
 Xdo-install:
 X	${MKDIR} ${PREFIX}/bin ${PREFIX}/afni_doc
 X	${INSTALL_PROGRAM} ${WRKSRC}/BSD/* ${PREFIX}/bin
 X	${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/TTatlas* ${PREFIX}/bin
 X	${INSTALL_MAN} ${WRKDIR}/afni_doc/* ${PREFIX}/afni_doc
 X	${INSTALL_MAN} ${DISTDIR}/${DIST_SUBDIR}/afni.1 ${LOCALBASE}/man/man1
 X	${GZIP_CMD} ${LOCALBASE}/man/man1/afni.1
 X
 Xpost-install:
 X	${CAT} pkg-message
 X
 X.include <bsd.port.mk>
 END-of-science/afni/Makefile
 echo x - science/afni/pkg-descr
 sed 's/^X//' >science/afni/pkg-descr << 'END-of-science/afni/pkg-descr'
 XThis is a port of afni, Advanced Functional Neuro Imaging
 X
 XWWW: http://www.neuro.mcw.edu/~bacon
 X
 X- Jason
 Xjbacon@mcw.edu
 END-of-science/afni/pkg-descr
 echo x - science/afni/distinfo
 sed 's/^X//' >science/afni/distinfo << 'END-of-science/afni/distinfo'
 XMD5 (AFNI/afni_src.tgz) = 8f118f55721573feee6efa7bfff64456
 XSIZE (AFNI/afni_src.tgz) = 10481603
 XMD5 (AFNI/afni_doc.tgz) = 3b085de85fc46908652ae287d1cceb38
 XSIZE (AFNI/afni_doc.tgz) = 3267095
 XMD5 (AFNI/afni.1) = 39c9a1a39b207cd957f0f0d5ec220e4e
 XSIZE (AFNI/afni.1) = 1103
 XMD5 (AFNI/Makefile.BSD) = 765ec1dddb0063fbd5310214c065463e
 XSIZE (AFNI/Makefile.BSD) = 3625
 XMD5 (AFNI/TTatlas+tlrc.BRIK.gz) = f5a107b049bc426af5342565f4e5beee
 XSIZE (AFNI/TTatlas+tlrc.BRIK.gz) = 159912
 XMD5 (AFNI/TTatlas+tlrc.HEAD) = a0ca787a2996d7e66548176808503ac5
 XSIZE (AFNI/TTatlas+tlrc.HEAD) = 1750
 END-of-science/afni/distinfo
 echo x - science/afni/pkg-message
 sed 's/^X//' >science/afni/pkg-message << 'END-of-science/afni/pkg-message'
 X
 X=============================================================================
 XUsers will need to have ${PREFIX}/bin in their PATH in order
 Xto run programs in the AFNI distribution.
 X
 XDocumentation can be found in ${PREFIX}/afni_doc.
 X
 XThe environment AFNI_PLUGIN_PATH must also be set to the bin directory
 Xin order to run AFNI plugins.
 X
 XEach user is advised to create a .afnirc file in their home directory
 Xto customize settings.
 X
 XFor questions or comments regarding this port, please contact the
 Xport maintainer: jbacon@mcw.edu
 X
 XFor AFNI usage, please visit the AFNI WEB site at http://afni.nimh.nih.gov.
 X=============================================================================
 END-of-science/afni/pkg-message
 echo x - science/afni/pkg-plist
 sed 's/^X//' >science/afni/pkg-plist << 'END-of-science/afni/pkg-plist'
 Xafni_doc/1dplot.ps
 Xafni_doc/24swap.ps
 Xafni_doc/2dImReg.ps
 Xafni_doc/2swap.ps
 Xafni_doc/3T_toafni.ps
 Xafni_doc/3dANOVA.ps
 Xafni_doc/3dANOVA2.ps
 Xafni_doc/3dANOVA3.ps
 Xafni_doc/3dDeconvolve.ps
 Xafni_doc/3dExtrema.ps
 Xafni_doc/3dFDR.ps
 Xafni_doc/3dFWHM.ps
 Xafni_doc/3dFriedman.ps
 Xafni_doc/3dIntracranial.ps
 Xafni_doc/3dKruskalWallis.ps
 Xafni_doc/3dMannWhitney.ps
 Xafni_doc/3dNLfim.ps
 Xafni_doc/3dRegAna.ps
 Xafni_doc/3dStatClust.ps
 Xafni_doc/3dTSgen.ps
 Xafni_doc/3dTcat.ps
 Xafni_doc/3dTsmooth.ps
 Xafni_doc/3dWavelets.ps
 Xafni_doc/3dWilcoxon.ps
 Xafni_doc/3daxialize.ps
 Xafni_doc/3dbuc2fim.ps
 Xafni_doc/3dbucket.ps
 Xafni_doc/3dcalc.ps
 Xafni_doc/3dclust.ps
 Xafni_doc/3dcolon.ps
 Xafni_doc/3ddup.ps
 Xafni_doc/3dfim+.ps
 Xafni_doc/3dfim.ps
 Xafni_doc/3dfractionize.ps
 Xafni_doc/3dhistog.ps
 Xafni_doc/3dinfo.ps
 Xafni_doc/3dmaskave.ps
 Xafni_doc/3dmerge.ps
 Xafni_doc/3dnewid.ps
 Xafni_doc/3dnoise.ps
 Xafni_doc/3dnvals.ps
 Xafni_doc/3dpc.ps
 Xafni_doc/3dproject.ps
 Xafni_doc/3drefit.ps
 Xafni_doc/3drotate.ps
 Xafni_doc/3dttest.ps
 Xafni_doc/3dvolreg.ps
 Xafni_doc/4swap.ps
 Xafni_doc/AFNI.changes.cox
 Xafni_doc/AFNI.changes.rhammett
 Xafni_doc/AFNI.changes.rickr
 Xafni_doc/AlphaSim.ps
 Xafni_doc/AlphaSim_fig.ps
 Xafni_doc/FD2.ps
 Xafni_doc/Nonparametric.ps
 Xafni_doc/README
 Xafni_doc/README.Ifile
 Xafni_doc/README.attributes
 Xafni_doc/README.bzip2
 Xafni_doc/README.changes
 Xafni_doc/README.compression
 Xafni_doc/README.copyright
 Xafni_doc/README.driver
 Xafni_doc/README.environment
 Xafni_doc/README.func_types
 Xafni_doc/README.notes
 Xafni_doc/README.roi
 Xafni_doc/README.permtest
 Xafni_doc/README.plugouts
 Xafni_doc/README.realtime
 Xafni_doc/README.registration
 Xafni_doc/README.render_scripts
 Xafni_doc/README.setup
 Xafni_doc/README.volreg
 Xafni_doc/README.web
 Xafni_doc/README.ziad
 Xafni_doc/RSFgen.ps
 Xafni_doc/Table.ps
 Xafni_doc/abut.ps
 Xafni_doc/adwarp.ps
 Xafni_doc/afni200.ps
 Xafni_doc/afni_aux.ps
 Xafni_doc/afni_plugins.ps
 Xafni_doc/afni_register.ps
 Xafni_doc/buckets.ps
 Xafni_doc/byteorder.ps
 Xafni_doc/ccalc.ps
 Xafni_doc/cdf.ps
 Xafni_doc/count.ps
 Xafni_doc/fim2.ps
 Xafni_doc/float_scan.ps
 Xafni_doc/from3d.ps
 Xafni_doc/ftosh.ps
 Xafni_doc/imand.ps
 Xafni_doc/imaver.ps
 Xafni_doc/imcalc.ps
 Xafni_doc/imdump.ps
 Xafni_doc/immask.ps
 Xafni_doc/imreg.ps
 Xafni_doc/imrotate.ps
 Xafni_doc/imstack.ps
 Xafni_doc/imstat.ps
 Xafni_doc/imupsam.ps
 Xafni_doc/mritopgm.ps
 Xafni_doc/nsize.ps
 Xafni_doc/p2t.ps
 Xafni_doc/sfim.ps
 Xafni_doc/sqwave.ps
 Xafni_doc/tfim.ps
 Xafni_doc/to3d.ps
 Xafni_doc/waver.ps
 Xbin/1dcat
 Xbin/1ddot
 Xbin/1deval
 Xbin/1dfft
 Xbin/1dgrayplot
 Xbin/1dnorm
 Xbin/1dplot
 Xbin/1dsum
 Xbin/1dsvd
 Xbin/1dtranspose
 Xbin/24swap
 Xbin/2dImReg
 Xbin/2swap
 Xbin/3T_toafni
 Xbin/3dAFNIto3D
 Xbin/3dAFNItoANALYZE
 Xbin/3dAFNItoMINC
 Xbin/3dAFNItoNIFTI
 Xbin/3dAFNItoNIML
 Xbin/3dAFNItoRaw
 Xbin/3dANALYZEtoAFNI
 Xbin/3dANOVA
 Xbin/3dANOVA2
 Xbin/3dANOVA3
 Xbin/3dAnatNudge
 Xbin/3dCM
 Xbin/3dAnhist
 Xbin/3dAttribute
 Xbin/3dAutoTcorrelate
 Xbin/3dAutobox
 Xbin/3dAutomask
 Xbin/3dBRAIN_VOYAGERtoAFNI
 Xbin/3dCRUISEtoAFNI
 Xbin/3dClipLevel
 Xbin/3dConvolve
 Xbin/3dDTeig
 Xbin/3dDWItoDT
 Xbin/3dDeconvolve
 Xbin/3dDeconvolve_f
 Xbin/3dDespike
 Xbin/3dDetrend
 Xbin/3dEntropy
 Xbin/3dExtrema
 Xbin/3dFDR
 Xbin/3dFWHM
 Xbin/3dFourier
 Xbin/3dFriedman
 Xbin/3dIntracranial
 Xbin/3dKruskalWallis
 Xbin/3dLRflip
 Xbin/3dLocalstat
 Xbin/3dMINCtoAFNI
 Xbin/3dMannWhitney
 Xbin/3dMax
 Xbin/3dMean
 Xbin/3dMedianFilter
 Xbin/3dNLfim
 Xbin/3dNotes
 Xbin/3dOverlap
 Xbin/3dROIstats
 Xbin/3dRegAna
 Xbin/3dRowFillin
 Xbin/3dSkullStrip
 Xbin/3dSpatNorm
 Xbin/3dStatClust
 Xbin/3dSurf2Vol
 Xbin/3dSurfMask
 Xbin/3dTSgen
 Xbin/3dTagalign
 Xbin/3dTcat
 Xbin/3dTcorrelate
 Xbin/3dThreetoRGB
 Xbin/3dToutcount
 Xbin/3dTqual
 Xbin/3dTshift
 Xbin/3dTstat
 Xbin/3dTsmooth
 Xbin/3dUndump
 Xbin/3dUniformize
 Xbin/3dVol2Surf
 Xbin/3dWarp
 Xbin/3dWarpDrive
 Xbin/3dWavelets
 Xbin/3dWilcoxon
 Xbin/3dWinsor
 Xbin/3dZcat
 Xbin/3dZcutup
 Xbin/3dZeropad
 Xbin/3dZregrid
 Xbin/3danisosmooth
 Xbin/3daxialize
 Xbin/3dbuc2fim
 Xbin/3dbucket
 Xbin/3dcalc
 Xbin/3dclust
 Xbin/3dcopy
 Xbin/3ddata.h
 Xbin/3ddelay
 Xbin/3ddot
 Xbin/3ddup
 Xbin/3dedge3
 Xbin/3dfim
 Xbin/3dfim+
 Xbin/3dfractionize
 Xbin/3dhistog
 Xbin/3dinfo
 Xbin/3dmaskave
 Xbin/3dmaskdump
 Xbin/3dmaxima
 Xbin/3dmerge
 Xbin/3dnewid
 Xbin/3dnoise
 Xbin/3dnvals
 Xbin/3dpc
 Xbin/3dproject
 Xbin/3drefit
 Xbin/3drename
 Xbin/3dresample
 Xbin/3dretroicor
 Xbin/3drotate
 Xbin/3dttest
 Xbin/3dvolreg
 Xbin/4swap
 Xbin/@4Daverage
 Xbin/@AfniOrient2RAImap
 Xbin/@AfniOrientSign
 Xbin/@Align_Centers
 Xbin/@Center_Distance
 Xbin/@FromRAI
 Xbin/@CheckForAfniDset
 Xbin/@CommandGlobb
 Xbin/@DTI_studio_reposition
 Xbin/@GetAfniOrient
 Xbin/@GetAfniPrefix
 Xbin/@GetAfniView
 Xbin/@NoExt
 Xbin/@Purify_1D
 Xbin/@RenamePanga
 Xbin/@SUMA_AlignToExperiment
 Xbin/@SUMA_Make_Spec_FS
 Xbin/@SUMA_Make_Spec_SF
 Xbin/@ToRAI
 Xbin/@UpdateAfni
 Xbin/@VolCenter
 Xbin/@align_partial_oblique
 Xbin/@auto_align
 Xbin/@auto_tlrc
 Xbin/@clip_volume
 Xbin/@fix_FSsphere
 Xbin/@make_stim_file
 Xbin/@parse_afni_name
 Xbin/@parse_name
 Xbin/AlphaSim
 Xbin/CompareSurfaces
 Xbin/ConvertDset
 Xbin/ConvertSurface
 Xbin/ConvexHull
 Xbin/CreateIcosahedron
 Xbin/DTIStudioFibertoSegments
 Xbin/Dimon
 Xbin/FD2
 Xbin/FSread_annot
 Xbin/Ifile
 Xbin/Imon
 Xbin/IsoSurface
 Xbin/MakeColorMap
 Xbin/MapIcosahedron
 Xbin/ROI2dataset
 Xbin/ROIgrow
 Xbin/RSFgen
 Xbin/SUMA_glxdino
 Xbin/SUMA_paperplane
 Xbin/SUMA_pixmap2eps
 Xbin/Vecwarp
 Xbin/SampBias
 Xbin/ScaleToMap
 Xbin/SurfClust
 Xbin/SurfMeasures
 Xbin/SurfPatch
 Xbin/SurfQual
 Xbin/SurfSmooth
 Xbin/SurfToSurf
 Xbin/SurfaceMetrics
 Xbin/Xphace
 Xbin/abut
 Xbin/adwarp
 Xbin/afni
 Xbin/afni_environ.h
 Xbin/afni_vcheck
 Xbin/afni_warp.h
 Xbin/aiv
 Xbin/byteorder
 Xbin/cat_matvec
 Xbin/ccalc
 Xbin/cdf
 Xbin/cdflib.h
 Xbin/cjpeg
 Xbin/count
 Xbin/coxplot.h
 Xbin/cs.h
 Xbin/cs_sort_template.h
 Xbin/dicom_hdr
 Xbin/dicom_to_raw
 Xbin/djpeg
 Xbin/editvol.h
 Xbin/eispack.h
 Xbin/ent16
 Xbin/f2c.h
 Xbin/face_JimEliassen.jpg
 Xbin/face_JohannaBaas.jpg
 Xbin/face_SalloumJB.jpg
 Xbin/face_ZangYF.jpg
 Xbin/face_aclark.jpg
 Xbin/face_adij_mannheim.jpg
 Xbin/face_afniman.jpg
 Xbin/face_agoldman.jpg
 Xbin/face_ahammett.jpg
 Xbin/face_anewmanetal.jpg
 Xbin/face_anugent.jpg
 Xbin/face_asanders.jpg
 Xbin/face_ashackman.jpg
 Xbin/face_athomas.jpg
 Xbin/face_bandettini.jpg
 Xbin/face_barbaracd.jpg
 Xbin/face_bargall.jpg
 Xbin/face_bea.jpg
 Xbin/face_becky.jpg
 Xbin/face_bmcnamee.jpg
 Xbin/face_bodurka.jpg
 Xbin/face_bprogers.jpg
 Xbin/face_bridget.jpg
 Xbin/face_brodmann.jpg
 Xbin/face_browndyke.jpg
 Xbin/face_carol.jpg
 Xbin/face_cbikle.jpg
 Xbin/face_claudio.jpg
 Xbin/face_cmoritz.jpg
 Xbin/face_cmyers.jpg
 Xbin/face_csenior.jpg
 Xbin/face_cwettig.jpg
 Xbin/face_dglen.jpg
 Xbin/face_einstein.jpg
 Xbin/face_eli.jpg
 Xbin/face_ernv.jpg
 Xbin/face_eteoh.jpg
 Xbin/face_faustalui.jpg
 Xbin/face_ftam.jpg
 Xbin/face_gambero.jpg
 Xbin/face_gangchen.jpg
 Xbin/face_gganis.jpg
 Xbin/face_ggiulietti.jpg
 Xbin/face_glarkin.jpg
 Xbin/face_grant.jpg
 Xbin/face_hanlon.jpg
 Xbin/face_heekeren.jpg
 Xbin/face_hoffmangobbini.jpg
 Xbin/face_ibitter.jpg
 Xbin/face_ilevy.jpg
 Xbin/face_imukai.jpg
 Xbin/fftest
 Xbin/face_jbinder.jpg
 Xbin/face_jbjork.jpg
 Xbin/face_jchoi.jpg
 Xbin/face_jigokudani.jpg
 Xbin/face_jkurata.jpg
 Xbin/face_jskipper.jpg
 Xbin/face_jweisberg.jpg
 Xbin/face_kastnerlab.jpg
 Xbin/face_kebb.jpg
 Xbin/face_kkwong.jpg
 Xbin/face_kropella.jpg
 Xbin/face_kschreiber.jpg
 Xbin/face_kuba.jpg
 Xbin/face_lask.jpg
 Xbin/face_laura.jpg
 Xbin/face_lincoln1.jpg
 Xbin/face_lincoln2.jpg
 Xbin/face_lindachao.jpg
 Xbin/face_lizyoder.jpg
 Xbin/face_ljcox.jpg
 Xbin/face_llatour.jpg
 Xbin/face_lmccall.jpg
 Xbin/face_locikidsucsd.jpg
 Xbin/face_lukas.jpg
 Xbin/face_mamann.jpg
 Xbin/face_maxwell.jpg
 Xbin/face_mbeauchamp.jpg
 Xbin/face_mbelmonte.jpg
 Xbin/face_megcrew.jpg
 Xbin/face_mgarolera.jpg
 Xbin/face_mkenney.jpg
 Xbin/face_mmaieron.jpg
 Xbin/face_mmk.jpg
 Xbin/face_mpinsk.jpg
 Xbin/face_mruppe.jpg
 Xbin/face_mscohen.jpg
 Xbin/face_notspm.jpg
 Xbin/face_pchristidis.jpg
 Xbin/face_phoebechan.jpg
 Xbin/face_prowser.jpg
 Xbin/face_psfb.jpg
 Xbin/face_qiulin.jpg
 Xbin/face_rabeauchamp.jpg
 Xbin/face_rbirn.jpg
 Xbin/face_rhammett.jpg
 Xbin/face_rhenderson.jpg
 Xbin/face_rhoge.jpg
 Xbin/face_richd.jpg
 Xbin/face_rjsquirrel.jpg
 Xbin/face_rprost.jpg
 Xbin/face_rreynolds.jpg
 Xbin/face_rwcox.jpg
 Xbin/face_rwcox2.jpg
 Xbin/face_rwcox3.jpg
 Xbin/face_rwcox4.jpg
 Xbin/face_rwcox5.jpg
 Xbin/face_rwcox6.jpg
 Xbin/face_sjapee.jpg
 Xbin/face_saccanch.jpg
 Xbin/face_skammy.jpg
 Xbin/face_skapdoskar.jpg
 Xbin/face_smarrett.jpg
 Xbin/face_ssaad.jpg
 Xbin/face_ssmall.jpg
 Xbin/face_steverao.jpg
 Xbin/face_tolkien.jpg
 Xbin/face_vhradil.jpg
 Xbin/face_vincent1.jpg
 Xbin/face_vincent2.jpg
 Xbin/face_vincent3.jpg
 Xbin/face_vincent4.jpg
 Xbin/face_vnapadow.jpg
 Xbin/face_wapostman1.jpg
 Xbin/face_wapostman2.jpg
 Xbin/face_wmluh.jpg
 Xbin/face_wpostman.jpg
 Xbin/face_zsaad.jpg
 Xbin/face_zzzdini.jpg
 Xbin/face_zzzsunbrain.jpg
 Xbin/file_tool
 Xbin/fim2
 Xbin/float_scan
 Xbin/from3d
 Xbin/ftosh
 Xbin/ge_header
 Xbin/im2niml
 Xbin/imand
 Xbin/imaver
 Xbin/imcalc
 Xbin/imcutup
 Xbin/imdump
 Xbin/immask
 Xbin/imreg
 Xbin/imrotate
 Xbin/imstack
 Xbin/imstat
 Xbin/imupsam
 Xbin/inspec
 Xbin/killer.h
 Xbin/libSUMA.a
 Xbin/libcoxplot.a
 Xbin/libf2c.a
 Xbin/libmri.a
 Xbin/libmrix.a
 Xbin/libvolpack.a
 Xbin/machdep.h
 Xbin/mayo_analyze
 Xbin/mcw_glob.h
 Xbin/mcw_malloc.h
 Xbin/model_beta.so
 Xbin/model_constant.so
 Xbin/model_convgamma.so
 Xbin/model_convgamma2a.so
 Xbin/model_diffexp.so
 Xbin/model_diffusion.so
 Xbin/model_gammavar.so
 Xbin/model_linear.so
 Xbin/model_null.so
 Xbin/model_quadratic.so
 Xbin/model_sinewave_ap.so
 Xbin/model_sinewave_apf.so
 Xbin/model_squarewave_ap.so
 Xbin/model_squarewave_apf.so
 Xbin/model_trnglwave_ap.so
 Xbin/model_trnglwave_apf.so
 Xbin/mpeg_encode
 Xbin/mpegtoppm
 Xbin/mrilib.h
 Xbin/mritopgm
 Xbin/multivector.h
 Xbin/myget
 Xbin/nicat
 Xbin/nifti1_test
 Xbin/nifti_stats
 Xbin/nifti_tool
 Xbin/niml.h
 Xbin/nsize
 Xbin/p2t
 Xbin/plug_3Ddump_V2.so
 Xbin/plug_3ddot.so
 Xbin/plug_3ddup.so
 Xbin/plug_4Ddump.so
 Xbin/plug_L1fit.so
 Xbin/plug_betafit.so
 Xbin/plug_clust.so
 Xbin/plug_compress.so
 Xbin/plug_coorder.so
 Xbin/plug_copy.so
 Xbin/plug_crender.so
 Xbin/plug_deconvolve.so
 Xbin/plug_delay_V2.so
 Xbin/plug_drawdset.so
 Xbin/plug_edit.so
 Xbin/plug_extract.so
 Xbin/plug_fourier.so
 Xbin/plug_hemisub.so
 Xbin/plug_histog.so
 Xbin/plug_imreg.so
 Xbin/plug_lsqfit.so
 Xbin/plug_maskave.so
 Xbin/plug_maskcalc.so
 Xbin/plug_maxima.so
 Xbin/plug_nlfit.so
 Xbin/plug_notes.so
 Xbin/plug_nth_dataset.so
 Xbin/plug_nudge.so
 Xbin/rmz
 Xbin/plug_permtest.so
 Xbin/plug_power.so
 Xbin/plug_realtime.so
 Xbin/plug_rename.so
 Xbin/plug_render.so
 Xbin/plug_reorder.so
 Xbin/plug_retroicor.so
 Xbin/plug_roiedit.so
 Xbin/plug_roiplot.so
 Xbin/plug_scatplot.so
 Xbin/plug_second_dataset.so
 Xbin/plug_stats.so
 Xbin/plug_stavg.so
 Xbin/plug_tag.so
 Xbin/plug_threshold.so
 Xbin/plug_ttget.so
 Xbin/plug_vol2surf.so
 Xbin/plug_volreg.so
 Xbin/plug_wavelets.so
 Xbin/plug_zeropad.so
 Xbin/plugout_drive
 Xbin/plugout_ijk
 Xbin/plugout_tt
 Xbin/plugout_tta
 Xbin/poem_bj1.txt
 Xbin/poem_eapoe1.txt
 Xbin/poem_em.txt
 Xbin/poem_ghm3.txt
 Xbin/poem_gmh1.txt
 Xbin/poem_gmh2.txt
 Xbin/poem_gmh3.txt
 Xbin/poem_jm1.txt
 Xbin/poem_pbs1.txt
 Xbin/poem_pbs2.txt
 Xbin/poem_rf1.txt
 Xbin/poem_rk1.txt
 Xbin/poem_rls1.txt
 Xbin/poem_ww1.txt
 Xbin/poem_ww2.txt
 Xbin/qhull
 Xbin/quickspec
 Xbin/rotcom
 Xbin/rtfeedme
 Xbin/serial_helper
 Xbin/sfim
 Xbin/siemens_vision
 Xbin/splash_bobkarl.jpg
 Xbin/splash_earth.jpg
 Xbin/splash_emars.jpg
 Xbin/splash_kebb.jpg
 Xbin/splash_marsalbor.jpg
 Xbin/splash_mcw03.jpg
 Xbin/splash_sscc03.jpg
 Xbin/splash_vincent.jpg
 Xbin/sqwave
 Xbin/strblast
 Xbin/suma
 Xbin/suma_change_spec
 Xbin/tagset.h
 Xbin/tfim
 Xbin/thd_compress.h
 Xbin/thd_iochan.h
 Xbin/thd_maker.h
 Xbin/to3d
 Xbin/vecmat.h
 Xbin/vol2surf.h
 Xbin/volpack.h
 Xbin/waver
 Xbin/whereami
 Xbin/whirlgif
 Xbin/TTatlas+tlrc.BRIK.gz
 Xbin/TTatlas+tlrc.HEAD
 X@dirrm bin
 X@dirrm afni_doc
 END-of-science/afni/pkg-plist
 exit
 
 
 --Boundary-00=_0cyrD0ObHn8JQAP--

From: Emanuel Haupt <ehaupt@FreeBSD.org>
To: Jason Bacon <jbacon@mcw.edu>
Cc: bug-followup@FreeBSD.org
Subject: Re: ports/90752: New port: science/afni Analysis of Fucntional
 NeuroImages
Date: Mon, 26 Dec 2005 16:19:50 +0100

 --Signature=_Mon__26_Dec_2005_16_19_50_+0100_9dX33hb7_xL7wsGi
 Content-Type: text/plain; charset=US-ASCII
 Content-Disposition: inline
 Content-Transfer-Encoding: quoted-printable
 
 Hi Jason
 
 > [snip]
 >
 > > The port does not respect CC [1] and CFLAGS [2].=20
 >=20
 > I assume you're referring to Makefile.BSD here, which I've updated to
 > respect  CC.  This is the only thing in the AFNI distribution that I
 > can tamper with,  and it must be maintained in a format usable outside
 > the FreeBSD ports system  for those who choose to build manually.=20
 > Note that most of the work in  building AFNI is done by
 > Makefile.INCLUDE, the universal portion of the AFNI  make setup that
 > Makefile.BSD, et. al. set the environment for.  It ignores  CFLAGS
 > entirely, and suggesting any changes to it is not likely to be=20
 > fruitful, so I had to tack flags directly onto CC in Makefile.BSD.=20
 > This may  seem a little kludgey, but I don't see a better solution at
 > the moment.
 
 You can either modify 'Makefile.INCLUDE' with a REINPLACE_CMD statement
 in the post-patch section or if the modifications are more complex with
 a unified patch (diff -uN) in 'files/'. If standard CFLAGS should fail
 for any reason try to figure out if you maybe can fix the problem
 otherwise (or ask me) if not, try to figure out if it fails to build on
 4.x/5.x/6.x and add non-standard CFLAGS for the according version only.
 A good way to test this is adding something like -DYEAHWERESPECTCFLAGS
 to CFLAGS in /etc/make.conf.
 
 > > If your port needs=20
 > > gmake you need to pass CC to MAKE_ENV.=20
 >=20
 > Added this to the port Makefile.
 
 This alone does not solve the CC ignorance (see [1] -> 'VAR=3Dfoo' vs
 'VAR+=3Dfoo').
 
 > > distinfo should now also contain=20
 > > SHA256 checksums. You can use 'make makesum' to calculate them.
 >=20
 > Had already done that.  Did you run into checksum problems?
 
 No, your distinfo file only contains MD5 checksum, new ports also need
 SHA256 hashes.
 
 > > Attention, using distfile names without a version in it are
 > > generally dangerous, once you re-roll the tarball or update them the
 > > port will fail due to a checksum mismatch.
 >=20
 > I'd already thought of this, but I'm not sure what the best solution
 > would be. =20
 >=20
 > I doubt the author of AFNI will want to start adding version numbers
 > on his  site.  I *could* remove it from MASTER_SITES and list only my
 > own copy, with  version numbers added.  Would it be acceptable not
 > having the original  download site in MASTER_SITES?
 
 This would be acceptable. Another solution would be mirroring the files
 without renaming them and add your mirror as second master site. That
 way modifications on the authors mastersite will cause the port to try
 the second mastersite. Some of our distfile furies or fenners distfile
 survey [2] will then notify you in case you don't notice it first :-)
 
 > > Finally please install portlint (devel/portlint) and run it with the
 > > '-A' option and eradicate the fatal warnings.
 >=20
 > Done.
 
 Thanks in advance for a new shell archive.
 
 Happy holidays to you too,
 Emanuel
 
 
 References:
 
 [1] http://www.freebsd.org/doc/en_US.ISO8859-1/books/porters-handbook/dads-=
 cc.html
 [2] http://people.freebsd.org/~fenner/portsurvey/
 
 --=20
 GnuPG key id: 0x55E67774         Download: http://pgp.mit.edu:11371
 Key fingerprint: 17B3 FD8F BA68 4AB4 10FD  A9D1 AD52 6588 55E6 7774
 
 --Signature=_Mon__26_Dec_2005_16_19_50_+0100_9dX33hb7_xL7wsGi
 Content-Type: application/pgp-signature
 
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v1.4.2 (FreeBSD)
 
 iD8DBQFDsAoarVJliFXmd3QRAt5PAJ0ZWXNyjyX1UmwdqK3ZAbSCwPGuIQCgqp9v
 T1MnVIf4McUSY0f/RC0Oo9A=
 =aWh+
 -----END PGP SIGNATURE-----
 
 --Signature=_Mon__26_Dec_2005_16_19_50_+0100_9dX33hb7_xL7wsGi--
State-Changed-From-To: feedback->open 
State-Changed-By: ehaupt 
State-Changed-When: Fri Jan 6 20:16:15 CET 2006 
State-Changed-Why:  
Feedback received. 

http://www.freebsd.org/cgi/query-pr.cgi?pr=90752 
State-Changed-From-To: open->feedback 
State-Changed-By: ehaupt 
State-Changed-When: Sun Jan 8 01:44:00 CET 2006 
State-Changed-Why:  
Awaiting maintainer feedback. 

http://www.freebsd.org/cgi/query-pr.cgi?pr=90752 
Responsible-Changed-From-To: ehaupt->freebsd-ports-bugs 
Responsible-Changed-By: ehaupt 
Responsible-Changed-When: Sat Jan 14 15:09:55 CET 2006 
Responsible-Changed-Why:  
Back to the queue, I will be away for the next 3 weeks. 

http://www.freebsd.org/cgi/query-pr.cgi?pr=90752 

From: Jason Bacon <jbacon@mcw.edu>
To: Emanuel Haupt <ehaupt@FreeBSD.org>
Cc: bug-followup@FreeBSD.org
Subject: Re: ports/90752: New port: science/afni Analysis of Fucntional NeuroImages
Date: Mon, 23 Jan 2006 23:19:52 -0600

 --Boundary-00=_5jb1DZHX13yoXJe
 Content-Type: text/plain;
   charset="iso-8859-1"
 Content-Transfer-Encoding: 7bit
 Content-Disposition: inline
 
 
 Alrightythen...  The attached shar file should be pretty close, if not there.  
 It comes up clean with portlint -A, and I tested it on 4.11, 5.4, and 6.0, 
 and made sure deinstall cleans up completely.
 
 I still use a ${PREFIX} of ${LOCALBASE}/mri/afni, since the MRI research 
 community is accustomed to software installations having their own 
 directories.
 
 If you think it's more important to follow ports convention and have it 
 default to ${LOCALBASE}, it should be OK.  I've done my best to eliminate any 
 potential collisions in bin and lib.
 
 Thanks,
 
 	Jason
 
 -- 
 Jason W. Bacon
 Systems Manager, fMRI Research Labs
 Medical College of Wisconsin
 8701 Watertown Plank Rd
 Room MFRC 4037
 Milwaukee, WI 53226
 (414) 456-5881
 (414) 456-6562 FAX
 
 --Boundary-00=_5jb1DZHX13yoXJe
 Content-Type: text/plain;
   charset="iso-8859-1";
   name="afni.shar"
 Content-Transfer-Encoding: 7bit
 Content-Disposition: attachment;
 	filename="afni.shar"
 
 # This is a shell archive.  Save it in a file, remove anything before
 # this line, and then unpack it by entering "sh file".  Note, it may
 # create directories; files and directories will be owned by you and
 # have default permissions.
 #
 # This archive contains:
 #
 #	afni
 #	afni/Makefile
 #	afni/distinfo
 #	afni/pkg-descr
 #	afni/pkg-message
 #	afni/pkg-plist
 #
 echo c - afni
 mkdir -p afni > /dev/null 2>&1
 echo x - afni/Makefile
 sed 's/^X//' >afni/Makefile << 'END-of-afni/Makefile'
 X############################################################################
 X# Ports collection Makefile for:   afni
 X# Date created:        11 Jan 2005
 X# Whom:                bacon@smithers.neuro.mcw.edu
 X#
 X# $FreeBSD$
 X#
 X
 X############################################################################
 X# www.neuro.mcw.edu has the latest source distribution from which this port
 X# is built.  It will be updated as time permits.
 X#
 X# afni.nimh.nih.gov is the ultimate source for AFNI, and will always
 X# contain the latest source release.  If this port is not up to date,
 X# you can download the latest sources and build manually using
 X# Makefile.BSD, which is included in the source distribution.
 X
 XPORTNAME=	afni
 XPORTVERSION=	2005.12.30.0934
 XCATEGORIES=	science biology graphics
 XMASTER_SITES=	http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/
 XDISTFILES=	afni_src.tgz afni_doc.tgz afni.1 \
 X		Makefile.FreeBSD_PORT TTatlas+tlrc.BRIK.gz TTatlas+tlrc.HEAD
 XDIST_SUBDIR=	AFNI
 XEXTRACT_ONLY=	afni_src.tgz afni_doc.tgz
 X
 XMAINTAINER=	bacon@smithers.neuro.mcw.edu
 XCOMMENT=	Advanced Functional Neuro Imaging
 X
 XBUILD_DEPENDS=	gettext:${PORTSDIR}/devel/gettext
 XRUN_DEPENDS=	cjpeg:${PORTSDIR}/graphics/jpeg \
 X		mpeg_encode:${PORTSDIR}/multimedia/mpeg_encode \
 X		whirlgif:${PORTSDIR}/graphics/whirlgif
 X
 XUSE_GMAKE=	yes
 XUSE_ICONV=	yes
 XUSE_MOTIF=	yes
 XMAKE_ENV=	CC="${CC}"
 X
 XWRKSRC=		${WRKDIR}/afni_src
 XMAKEFILE=	Makefile.FreeBSD_PORT
 XALL_TARGET=	vastness suma
 X
 X###########################################################################
 X# Install parameters
 X
 X# Stop INSTALL_PROGRAM from stripping debug info from binaries.
 XSTRIP=
 XPREFIX=		${LOCALBASE}/mri/afni
 XMANCOMPRESSED=	no
 XMAN1=		afni.1
 X
 XINSTALL_WRKSRC=	${WRKSRC}/BSD
 XINSTALL_TEMP=	${WRKSRC}/Backup.BSD
 XNO_MTREE=	yes
 X
 Xpost-extract:
 X	${CP} -f ${DISTDIR}/${DIST_SUBDIR}/Makefile.FreeBSD_PORT ${WRKSRC}
 X
 Xdo-install:
 X	${MKDIR} ${PREFIX}/bin ${PREFIX}/man/man1 ${PREFIX}/lib \
 X		${PREFIX}/include ${DATADIR} ${DOCSDIR} ${INSTALL_TEMP}
 X	${MV}	${INSTALL_WRKSRC}/libf2c.a ${INSTALL_TEMP}
 X	${INSTALL_DATA} ${INSTALL_WRKSRC}/*.so ${INSTALL_WRKSRC}/*.a \
 X		${PREFIX}/lib
 X	${INSTALL_DATA} ${INSTALL_WRKSRC}/*.h ${PREFIX}/include
 X	${INSTALL_DATA} ${INSTALL_WRKSRC}/*.jpg ${INSTALL_WRKSRC}/*.txt \
 X		${DATADIR}
 X	${MV}	${INSTALL_WRKSRC}/*.so \
 X		${INSTALL_WRKSRC}/*.a \
 X		${INSTALL_WRKSRC}/*.h \
 X		${INSTALL_WRKSRC}/*.jpg \
 X		${INSTALL_WRKSRC}/*.txt \
 X	 	${INSTALL_WRKSRC}/cjpeg \
 X		${INSTALL_WRKSRC}/djpeg \
 X		${INSTALL_WRKSRC}/mpeg_encode \
 X		${INSTALL_WRKSRC}/whirlgif \
 X		${INSTALL_TEMP}
 X	${INSTALL_PROGRAM} ${INSTALL_WRKSRC}/* ${PREFIX}/bin
 X	${MV} ${INSTALL_TEMP}/* ${INSTALL_WRKSRC}
 X	${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/TTatlas* ${DATADIR}
 X	${INSTALL_MAN} ${DISTDIR}/${DIST_SUBDIR}/afni.1 ${PREFIX}/man/man1
 X.if !defined(NOPORTDOCS)
 X	${INSTALL_DATA} ${WRKDIR}/afni_doc/* ${DOCSDIR}
 X.endif
 X
 Xpost-install:
 X	${CAT} pkg-message
 X
 X.include <bsd.port.mk>
 END-of-afni/Makefile
 echo x - afni/distinfo
 sed 's/^X//' >afni/distinfo << 'END-of-afni/distinfo'
 XMD5 (AFNI/afni_src.tgz) = e6daf296ad9c5dd0284239e934ea701e
 XSHA256 (AFNI/afni_src.tgz) = 949a6960e89f2b140207e61fd45b265b03232c4956aaa57271779dcd492aff89
 XSIZE (AFNI/afni_src.tgz) = 10512539
 XMD5 (AFNI/afni_doc.tgz) = 3b085de85fc46908652ae287d1cceb38
 XSHA256 (AFNI/afni_doc.tgz) = 28bfcb085d97f63a7e6b753d784908d7f90d9d3ba735d96b18c1e893af4d6cd1
 XSIZE (AFNI/afni_doc.tgz) = 3267095
 XMD5 (AFNI/afni.1) = 39c9a1a39b207cd957f0f0d5ec220e4e
 XSHA256 (AFNI/afni.1) = f14991934a8b78f2497cd1d0f48b849c1a6debef01c666eafd70993ba63c99da
 XSIZE (AFNI/afni.1) = 1103
 XMD5 (AFNI/Makefile.FreeBSD_PORT) = 5a22ac13683686b6919415bef3784af1
 XSHA256 (AFNI/Makefile.FreeBSD_PORT) = 0adbd36cedfc2dac76535fe621349a45e9812709eb5b2768427fffda9b42c628
 XSIZE (AFNI/Makefile.FreeBSD_PORT) = 3002
 XMD5 (AFNI/TTatlas+tlrc.BRIK.gz) = f5a107b049bc426af5342565f4e5beee
 XSHA256 (AFNI/TTatlas+tlrc.BRIK.gz) = 0b5b087006e07e05c5f0c8306acaade955924f744457cec0c00844cc2e9e67cd
 XSIZE (AFNI/TTatlas+tlrc.BRIK.gz) = 159912
 XMD5 (AFNI/TTatlas+tlrc.HEAD) = a0ca787a2996d7e66548176808503ac5
 XSHA256 (AFNI/TTatlas+tlrc.HEAD) = 51c3fb158990616f355fea56886fc7c85d80ac96779f5a65a8f69207c2a85919
 XSIZE (AFNI/TTatlas+tlrc.HEAD) = 1750
 END-of-afni/distinfo
 echo x - afni/pkg-descr
 sed 's/^X//' >afni/pkg-descr << 'END-of-afni/pkg-descr'
 XThis is a port of AFNI, Advanced Functional Neuro Imaging.  AFNI is
 Xa tool for analyzing 3 dimensional images, especially functional MRI
 Ximages used in brain mapping research.
 X
 XWWW: http://afni.nimh.nih.gov/
 X
 XPort maintainer: 
 X    Jason W. Bacon
 X    bacon@smithers.neuro.mcw.edu
 END-of-afni/pkg-descr
 echo x - afni/pkg-message
 sed 's/^X//' >afni/pkg-message << 'END-of-afni/pkg-message'
 X=============================================================================
 XUsers must have ${PREFIX}/bin in their PATH in order
 Xto run programs in the AFNI distribution.
 X
 X${PREFIX}/man must be in MANPATH for the afni man page to be viewable.
 X
 XPostscript documentation and READMEs can be found in ${DOCSDIR}.
 X
 XThe environment variable AFNI_PLUGIN_PATH must contain
 X"${PREFIX}/lib:${PREFIX}/share/afni" in order to run AFNI plugins
 Xand view splash images.
 X
 XFor questions or comments regarding the FreeBSD port, please contact the
 Xport maintainer: 
 X
 Xbacon@smithers.neuro.mcw.edu
 X
 XFor AFNI configuration and usage, please visit the AFNI WEB site at 
 X
 Xhttp://afni.nimh.nih.gov.
 X=============================================================================
 END-of-afni/pkg-message
 echo x - afni/pkg-plist
 sed 's/^X//' >afni/pkg-plist << 'END-of-afni/pkg-plist'
 Xbin/1dcat
 Xbin/1ddot
 Xbin/1deval
 Xbin/1dfft
 Xbin/1dgrayplot
 Xbin/1dnorm
 Xbin/1dplot
 Xbin/1dsum
 Xbin/1dsvd
 Xbin/1dtranspose
 Xbin/24swap
 Xbin/2dImReg
 Xbin/2swap
 Xbin/3T_toafni
 Xbin/3dAFNIto3D
 Xbin/3dAFNItoANALYZE
 Xbin/3dAFNItoMINC
 Xbin/3dAFNItoNIFTI
 Xbin/3dAFNItoNIML
 Xbin/3dAFNItoRaw
 Xbin/3dANALYZEtoAFNI
 Xbin/3dANOVA
 Xbin/3dANOVA2
 Xbin/3dANOVA3
 Xbin/3dAnatNudge
 Xbin/3dAnhist
 Xbin/3dAttribute
 Xbin/3dAutoTcorrelate
 Xbin/3dAutobox
 Xbin/3dAutomask
 Xbin/3dBRAIN_VOYAGERtoAFNI
 Xbin/3dCM
 Xbin/3dCRUISEtoAFNI
 Xbin/3dClipLevel
 Xbin/3dConvolve
 Xbin/3dDTeig
 Xbin/3dDWItoDT
 Xbin/3dDeconvolve
 Xbin/3dDeconvolve_f
 Xbin/3dDespike
 Xbin/3dDetrend
 Xbin/3dEntropy
 Xbin/3dExtrema
 Xbin/3dFDR
 Xbin/3dFWHM
 Xbin/3dFourier
 Xbin/3dFriedman
 Xbin/3dIntracranial
 Xbin/3dKruskalWallis
 Xbin/3dLRflip
 Xbin/3dLocalstat
 Xbin/3dMINCtoAFNI
 Xbin/3dMannWhitney
 Xbin/3dMax
 Xbin/3dMean
 Xbin/3dMedianFilter
 Xbin/3dNLfim
 Xbin/3dNotes
 Xbin/3dOverlap
 Xbin/3dROIstats
 Xbin/3dRegAna
 Xbin/3dRowFillin
 Xbin/3dSkullStrip
 Xbin/3dSpatNorm
 Xbin/3dStatClust
 Xbin/3dSurf2Vol
 Xbin/3dSurfMask
 Xbin/3dTSgen
 Xbin/3dTagalign
 Xbin/3dTcat
 Xbin/3dTcorrelate
 Xbin/3dThreetoRGB
 Xbin/3dToutcount
 Xbin/3dTqual
 Xbin/3dTshift
 Xbin/3dTsmooth
 Xbin/3dTstat
 Xbin/3dUndump
 Xbin/3dUniformize
 Xbin/3dVol2Surf
 Xbin/3dWarp
 Xbin/3dWarpDrive
 Xbin/3dWavelets
 Xbin/3dWilcoxon
 Xbin/3dWinsor
 Xbin/3dZcat
 Xbin/3dZcutup
 Xbin/3dZeropad
 Xbin/3dZregrid
 Xbin/3danisosmooth
 Xbin/3daxialize
 Xbin/3dbuc2fim
 Xbin/3dbucket
 Xbin/3dcalc
 Xbin/3dclust
 Xbin/3dcopy
 Xbin/3ddelay
 Xbin/3ddot
 Xbin/3ddup
 Xbin/3dedge3
 Xbin/3dfim
 Xbin/3dfim+
 Xbin/3dfractionize
 Xbin/3dhistog
 Xbin/3dinfo
 Xbin/3dmaskave
 Xbin/3dmaskdump
 Xbin/3dmaxima
 Xbin/3dmerge
 Xbin/3dnewid
 Xbin/3dnoise
 Xbin/3dnvals
 Xbin/3dpc
 Xbin/3dproject
 Xbin/3drefit
 Xbin/3drename
 Xbin/3dresample
 Xbin/3dretroicor
 Xbin/3drotate
 Xbin/3dttest
 Xbin/3dvolreg
 Xbin/4swap
 Xbin/@2dwarper
 Xbin/@4Daverage
 Xbin/@AfniOrient2RAImap
 Xbin/@AfniOrientSign
 Xbin/@Align_Centers
 Xbin/@Center_Distance
 Xbin/@CheckForAfniDset
 Xbin/@CommandGlobb
 Xbin/@DTI_studio_reposition
 Xbin/@FromRAI
 Xbin/@GetAfniOrient
 Xbin/@GetAfniPrefix
 Xbin/@GetAfniView
 Xbin/@NoExt
 Xbin/@Purify_1D
 Xbin/@RenamePanga
 Xbin/@SUMA_AlignToExperiment
 Xbin/@SUMA_Make_Spec_FS
 Xbin/@SUMA_Make_Spec_SF
 Xbin/@ToRAI
 Xbin/@UpdateAfni
 Xbin/@VolCenter
 Xbin/@align_partial_oblique
 Xbin/@auto_align
 Xbin/@auto_tlrc
 Xbin/@clip_volume
 Xbin/@fix_FSsphere
 Xbin/@make_stim_file
 Xbin/@parse_afni_name
 Xbin/@parse_name
 Xbin/AlphaSim
 Xbin/CompareSurfaces
 Xbin/ConvertDset
 Xbin/ConvertSurface
 Xbin/ConvexHull
 Xbin/CreateIcosahedron
 Xbin/DTIStudioFibertoSegments
 Xbin/Dimon
 Xbin/FD2
 Xbin/FSread_annot
 Xbin/Ifile
 Xbin/Imon
 Xbin/IsoSurface
 Xbin/MakeColorMap
 Xbin/MapIcosahedron
 Xbin/ROI2dataset
 Xbin/ROIgrow
 Xbin/RSFgen
 Xbin/SUMA_glxdino
 Xbin/SUMA_paperplane
 Xbin/SUMA_pixmap2eps
 Xbin/SampBias
 Xbin/ScaleToMap
 Xbin/SurfClust
 Xbin/SurfMeasures
 Xbin/SurfPatch
 Xbin/SurfQual
 Xbin/SurfSmooth
 Xbin/SurfToSurf
 Xbin/SurfaceMetrics
 Xbin/Vecwarp
 Xbin/Xphace
 Xbin/abut
 Xbin/adwarp
 Xbin/afni
 Xbin/afni_vcheck
 Xbin/aiv
 Xbin/byteorder
 Xbin/cat_matvec
 Xbin/ccalc
 Xbin/cdf
 Xbin/count
 Xbin/dicom_hdr
 Xbin/dicom_to_raw
 Xbin/ent16
 Xbin/fftest
 Xbin/file_tool
 Xbin/fim2
 Xbin/float_scan
 Xbin/from3d
 Xbin/ftosh
 Xbin/ge_header
 Xbin/im2niml
 Xbin/imand
 Xbin/imaver
 Xbin/imcalc
 Xbin/imcutup
 Xbin/imdump
 Xbin/immask
 Xbin/imreg
 Xbin/imrotate
 Xbin/imstack
 Xbin/imstat
 Xbin/imupsam
 Xbin/inspec
 Xbin/mayo_analyze
 Xbin/mpegtoppm
 Xbin/mritopgm
 Xbin/myget
 Xbin/nicat
 Xbin/nifti1_test
 Xbin/nifti_stats
 Xbin/nifti_tool
 Xbin/nsize
 Xbin/p2t
 Xbin/plugout_drive
 Xbin/plugout_ijk
 Xbin/plugout_tt
 Xbin/plugout_tta
 Xbin/qhull
 Xbin/quickspec
 Xbin/rmz
 Xbin/rotcom
 Xbin/rtfeedme
 Xbin/serial_helper
 Xbin/sfim
 Xbin/siemens_vision
 Xbin/sqwave
 Xbin/strblast
 Xbin/suma
 Xbin/suma_change_spec
 Xbin/tfim
 Xbin/to3d
 Xbin/waver
 Xbin/whereami
 Xinclude/3ddata.h
 Xinclude/afni_environ.h
 Xinclude/afni_warp.h
 Xinclude/cdflib.h
 Xinclude/coxplot.h
 Xinclude/cs.h
 Xinclude/cs_sort_template.h
 Xinclude/editvol.h
 Xinclude/eispack.h
 Xinclude/f2c.h
 Xinclude/killer.h
 Xinclude/machdep.h
 Xinclude/mcw_glob.h
 Xinclude/mcw_malloc.h
 Xinclude/mrilib.h
 Xinclude/multivector.h
 Xinclude/niml.h
 Xinclude/tagset.h
 Xinclude/thd_compress.h
 Xinclude/thd_iochan.h
 Xinclude/thd_maker.h
 Xinclude/vecmat.h
 Xinclude/vol2surf.h
 Xinclude/volpack.h
 Xlib/libSUMA.a
 Xlib/libcoxplot.a
 Xlib/libmri.a
 Xlib/libmrix.a
 Xlib/libvolpack.a
 Xlib/model_beta.so
 Xlib/model_constant.so
 Xlib/model_convgamma.so
 Xlib/model_convgamma2a.so
 Xlib/model_diffexp.so
 Xlib/model_diffusion.so
 Xlib/model_gammavar.so
 Xlib/model_linear.so
 Xlib/model_null.so
 Xlib/model_quadratic.so
 Xlib/model_sinewave_ap.so
 Xlib/model_sinewave_apf.so
 Xlib/model_squarewave_ap.so
 Xlib/model_squarewave_apf.so
 Xlib/model_trnglwave_ap.so
 Xlib/model_trnglwave_apf.so
 Xlib/plug_3Ddump_V2.so
 Xlib/plug_3ddot.so
 Xlib/plug_3ddup.so
 Xlib/plug_4Ddump.so
 Xlib/plug_L1fit.so
 Xlib/plug_betafit.so
 Xlib/plug_clust.so
 Xlib/plug_compress.so
 Xlib/plug_coorder.so
 Xlib/plug_copy.so
 Xlib/plug_crender.so
 Xlib/plug_deconvolve.so
 Xlib/plug_delay_V2.so
 Xlib/plug_drawdset.so
 Xlib/plug_edit.so
 Xlib/plug_extract.so
 Xlib/plug_fourier.so
 Xlib/plug_hemisub.so
 Xlib/plug_histog.so
 Xlib/plug_imreg.so
 Xlib/plug_lsqfit.so
 Xlib/plug_maskave.so
 Xlib/plug_maskcalc.so
 Xlib/plug_maxima.so
 Xlib/plug_nlfit.so
 Xlib/plug_notes.so
 Xlib/plug_nth_dataset.so
 Xlib/plug_nudge.so
 Xlib/plug_permtest.so
 Xlib/plug_power.so
 Xlib/plug_realtime.so
 Xlib/plug_rename.so
 Xlib/plug_render.so
 Xlib/plug_reorder.so
 Xlib/plug_retroicor.so
 Xlib/plug_roiedit.so
 Xlib/plug_roiplot.so
 Xlib/plug_scatplot.so
 Xlib/plug_second_dataset.so
 Xlib/plug_stats.so
 Xlib/plug_stavg.so
 Xlib/plug_tag.so
 Xlib/plug_threshold.so
 Xlib/plug_ttget.so
 Xlib/plug_vol2surf.so
 Xlib/plug_volreg.so
 Xlib/plug_wavelets.so
 Xlib/plug_zeropad.so
 X%%DATADIR%%/TTatlas+tlrc.BRIK.gz
 X%%DATADIR%%/TTatlas+tlrc.HEAD
 X%%DATADIR%%/face_JimEliassen.jpg
 X%%DATADIR%%/face_JohannaBaas.jpg
 X%%DATADIR%%/face_SalloumJB.jpg
 X%%DATADIR%%/face_ZangYF.jpg
 X%%DATADIR%%/face_aclark.jpg
 X%%DATADIR%%/face_adij_mannheim.jpg
 X%%DATADIR%%/face_afniman.jpg
 X%%DATADIR%%/face_agoldman.jpg
 X%%DATADIR%%/face_ahammett.jpg
 X%%DATADIR%%/face_anewmanetal.jpg
 X%%DATADIR%%/face_anugent.jpg
 X%%DATADIR%%/face_asanders.jpg
 X%%DATADIR%%/face_ashackman.jpg
 X%%DATADIR%%/face_athomas.jpg
 X%%DATADIR%%/face_bandettini.jpg
 X%%DATADIR%%/face_barbaracd.jpg
 X%%DATADIR%%/face_bargall.jpg
 X%%DATADIR%%/face_bea.jpg
 X%%DATADIR%%/face_becky.jpg
 X%%DATADIR%%/face_bmcnamee.jpg
 X%%DATADIR%%/face_bodurka.jpg
 X%%DATADIR%%/face_bprogers.jpg
 X%%DATADIR%%/face_bridget.jpg
 X%%DATADIR%%/face_brodmann.jpg
 X%%DATADIR%%/face_browndyke.jpg
 X%%DATADIR%%/face_carol.jpg
 X%%DATADIR%%/face_cbikle.jpg
 X%%DATADIR%%/face_claudio.jpg
 X%%DATADIR%%/face_cmoritz.jpg
 X%%DATADIR%%/face_cmyers.jpg
 X%%DATADIR%%/face_csenior.jpg
 X%%DATADIR%%/face_cwettig.jpg
 X%%DATADIR%%/face_dglen.jpg
 X%%DATADIR%%/face_einstein.jpg
 X%%DATADIR%%/face_eli.jpg
 X%%DATADIR%%/face_ernv.jpg
 X%%DATADIR%%/face_eteoh.jpg
 X%%DATADIR%%/face_faustalui.jpg
 X%%DATADIR%%/face_ftam.jpg
 X%%DATADIR%%/face_gambero.jpg
 X%%DATADIR%%/face_gangchen.jpg
 X%%DATADIR%%/face_gganis.jpg
 X%%DATADIR%%/face_ggiulietti.jpg
 X%%DATADIR%%/face_glarkin.jpg
 X%%DATADIR%%/face_grant.jpg
 X%%DATADIR%%/face_hanlon.jpg
 X%%DATADIR%%/face_heekeren.jpg
 X%%DATADIR%%/face_hoffmangobbini.jpg
 X%%DATADIR%%/face_ibitter.jpg
 X%%DATADIR%%/face_ilevy.jpg
 X%%DATADIR%%/face_imukai.jpg
 X%%DATADIR%%/face_jbinder.jpg
 X%%DATADIR%%/face_jbjork.jpg
 X%%DATADIR%%/face_jchoi.jpg
 X%%DATADIR%%/face_jigokudani.jpg
 X%%DATADIR%%/face_jkurata.jpg
 X%%DATADIR%%/face_jskipper.jpg
 X%%DATADIR%%/face_jweisberg.jpg
 X%%DATADIR%%/face_kastnerlab.jpg
 X%%DATADIR%%/face_kebb.jpg
 X%%DATADIR%%/face_kkwong.jpg
 X%%DATADIR%%/face_kropella.jpg
 X%%DATADIR%%/face_kschreiber.jpg
 X%%DATADIR%%/face_kuba.jpg
 X%%DATADIR%%/face_lask.jpg
 X%%DATADIR%%/face_laura.jpg
 X%%DATADIR%%/face_lincoln1.jpg
 X%%DATADIR%%/face_lincoln2.jpg
 X%%DATADIR%%/face_lindachao.jpg
 X%%DATADIR%%/face_lizyoder.jpg
 X%%DATADIR%%/face_ljcox.jpg
 X%%DATADIR%%/face_llatour.jpg
 X%%DATADIR%%/face_lmccall.jpg
 X%%DATADIR%%/face_locikidsucsd.jpg
 X%%DATADIR%%/face_lukas.jpg
 X%%DATADIR%%/face_mamann.jpg
 X%%DATADIR%%/face_maxwell.jpg
 X%%DATADIR%%/face_mbeauchamp.jpg
 X%%DATADIR%%/face_mbelmonte.jpg
 X%%DATADIR%%/face_megcrew.jpg
 X%%DATADIR%%/face_mgarolera.jpg
 X%%DATADIR%%/face_mkenney.jpg
 X%%DATADIR%%/face_mmaieron.jpg
 X%%DATADIR%%/face_mmk.jpg
 X%%DATADIR%%/face_mpinsk.jpg
 X%%DATADIR%%/face_mruppe.jpg
 X%%DATADIR%%/face_mscohen.jpg
 X%%DATADIR%%/face_notspm.jpg
 X%%DATADIR%%/face_pchristidis.jpg
 X%%DATADIR%%/face_phoebechan.jpg
 X%%DATADIR%%/face_prowser.jpg
 X%%DATADIR%%/face_psfb.jpg
 X%%DATADIR%%/face_qiulin.jpg
 X%%DATADIR%%/face_rabeauchamp.jpg
 X%%DATADIR%%/face_rbirn.jpg
 X%%DATADIR%%/face_rhammett.jpg
 X%%DATADIR%%/face_rhenderson.jpg
 X%%DATADIR%%/face_rhoge.jpg
 X%%DATADIR%%/face_richd.jpg
 X%%DATADIR%%/face_rjsquirrel.jpg
 X%%DATADIR%%/face_rprost.jpg
 X%%DATADIR%%/face_rreynolds.jpg
 X%%DATADIR%%/face_rwcox.jpg
 X%%DATADIR%%/face_rwcox2.jpg
 X%%DATADIR%%/face_rwcox3.jpg
 X%%DATADIR%%/face_rwcox4.jpg
 X%%DATADIR%%/face_rwcox5.jpg
 X%%DATADIR%%/face_rwcox6.jpg
 X%%DATADIR%%/face_saccanch.jpg
 X%%DATADIR%%/face_sjapee.jpg
 X%%DATADIR%%/face_skammy.jpg
 X%%DATADIR%%/face_skapdoskar.jpg
 X%%DATADIR%%/face_smarrett.jpg
 X%%DATADIR%%/face_ssaad.jpg
 X%%DATADIR%%/face_ssmall.jpg
 X%%DATADIR%%/face_steverao.jpg
 X%%DATADIR%%/face_tieshan.jpg
 X%%DATADIR%%/face_tolkien.jpg
 X%%DATADIR%%/face_vhradil.jpg
 X%%DATADIR%%/face_vincent1.jpg
 X%%DATADIR%%/face_vincent2.jpg
 X%%DATADIR%%/face_vincent3.jpg
 X%%DATADIR%%/face_vincent4.jpg
 X%%DATADIR%%/face_vnapadow.jpg
 X%%DATADIR%%/face_wapostman1.jpg
 X%%DATADIR%%/face_wapostman2.jpg
 X%%DATADIR%%/face_wmluh.jpg
 X%%DATADIR%%/face_wpostman.jpg
 X%%DATADIR%%/face_zsaad.jpg
 X%%DATADIR%%/face_zzzdini.jpg
 X%%DATADIR%%/face_zzzsunbrain.jpg
 X%%DATADIR%%/poem_bj1.txt
 X%%DATADIR%%/poem_eapoe1.txt
 X%%DATADIR%%/poem_em.txt
 X%%DATADIR%%/poem_ghm3.txt
 X%%DATADIR%%/poem_gmh1.txt
 X%%DATADIR%%/poem_gmh2.txt
 X%%DATADIR%%/poem_gmh3.txt
 X%%DATADIR%%/poem_jm1.txt
 X%%DATADIR%%/poem_pbs1.txt
 X%%DATADIR%%/poem_pbs2.txt
 X%%DATADIR%%/poem_rf1.txt
 X%%DATADIR%%/poem_rk1.txt
 X%%DATADIR%%/poem_rls1.txt
 X%%DATADIR%%/poem_ww1.txt
 X%%DATADIR%%/poem_ww2.txt
 X%%DATADIR%%/splash_bobkarl.jpg
 X%%DATADIR%%/splash_earth.jpg
 X%%DATADIR%%/splash_emars.jpg
 X%%DATADIR%%/splash_kebb.jpg
 X%%DATADIR%%/splash_marsalbor.jpg
 X%%DATADIR%%/splash_mcw03.jpg
 X%%DATADIR%%/splash_sscc03.jpg
 X%%DATADIR%%/splash_vincent.jpg
 X%%DOCSDIR%%/1dplot.ps
 X%%DOCSDIR%%/24swap.ps
 X%%DOCSDIR%%/2dImReg.ps
 X%%DOCSDIR%%/2swap.ps
 X%%DOCSDIR%%/3T_toafni.ps
 X%%DOCSDIR%%/3dANOVA.ps
 X%%DOCSDIR%%/3dANOVA2.ps
 X%%DOCSDIR%%/3dANOVA3.ps
 X%%DOCSDIR%%/3dDeconvolve.ps
 X%%DOCSDIR%%/3dExtrema.ps
 X%%DOCSDIR%%/3dFDR.ps
 X%%DOCSDIR%%/3dFWHM.ps
 X%%DOCSDIR%%/3dFriedman.ps
 X%%DOCSDIR%%/3dIntracranial.ps
 X%%DOCSDIR%%/3dKruskalWallis.ps
 X%%DOCSDIR%%/3dMannWhitney.ps
 X%%DOCSDIR%%/3dNLfim.ps
 X%%DOCSDIR%%/3dRegAna.ps
 X%%DOCSDIR%%/3dStatClust.ps
 X%%DOCSDIR%%/3dTSgen.ps
 X%%DOCSDIR%%/3dTcat.ps
 X%%DOCSDIR%%/3dTsmooth.ps
 X%%DOCSDIR%%/3dWavelets.ps
 X%%DOCSDIR%%/3dWilcoxon.ps
 X%%DOCSDIR%%/3daxialize.ps
 X%%DOCSDIR%%/3dbuc2fim.ps
 X%%DOCSDIR%%/3dbucket.ps
 X%%DOCSDIR%%/3dcalc.ps
 X%%DOCSDIR%%/3dclust.ps
 X%%DOCSDIR%%/3dcolon.ps
 X%%DOCSDIR%%/3ddup.ps
 X%%DOCSDIR%%/3dfim+.ps
 X%%DOCSDIR%%/3dfim.ps
 X%%DOCSDIR%%/3dfractionize.ps
 X%%DOCSDIR%%/3dhistog.ps
 X%%DOCSDIR%%/3dinfo.ps
 X%%DOCSDIR%%/3dmaskave.ps
 X%%DOCSDIR%%/3dmerge.ps
 X%%DOCSDIR%%/3dnewid.ps
 X%%DOCSDIR%%/3dnoise.ps
 X%%DOCSDIR%%/3dnvals.ps
 X%%DOCSDIR%%/3dpc.ps
 X%%DOCSDIR%%/3dproject.ps
 X%%DOCSDIR%%/3drefit.ps
 X%%DOCSDIR%%/3drotate.ps
 X%%DOCSDIR%%/3dttest.ps
 X%%DOCSDIR%%/3dvolreg.ps
 X%%DOCSDIR%%/4swap.ps
 X%%DOCSDIR%%/AFNI.changes.cox
 X%%DOCSDIR%%/AFNI.changes.rhammett
 X%%DOCSDIR%%/AFNI.changes.rickr
 X%%DOCSDIR%%/AlphaSim.ps
 X%%DOCSDIR%%/AlphaSim_fig.ps
 X%%DOCSDIR%%/FD2.ps
 X%%DOCSDIR%%/Nonparametric.ps
 X%%DOCSDIR%%/README
 X%%DOCSDIR%%/README.Ifile
 X%%DOCSDIR%%/README.attributes
 X%%DOCSDIR%%/README.bzip2
 X%%DOCSDIR%%/README.changes
 X%%DOCSDIR%%/README.compression
 X%%DOCSDIR%%/README.copyright
 X%%DOCSDIR%%/README.driver
 X%%DOCSDIR%%/README.environment
 X%%DOCSDIR%%/README.func_types
 X%%DOCSDIR%%/README.notes
 X%%DOCSDIR%%/README.permtest
 X%%DOCSDIR%%/README.plugouts
 X%%DOCSDIR%%/README.realtime
 X%%DOCSDIR%%/README.registration
 X%%DOCSDIR%%/README.render_scripts
 X%%DOCSDIR%%/README.roi
 X%%DOCSDIR%%/README.setup
 X%%DOCSDIR%%/README.volreg
 X%%DOCSDIR%%/README.web
 X%%DOCSDIR%%/README.ziad
 X%%DOCSDIR%%/RSFgen.ps
 X%%DOCSDIR%%/Table.ps
 X%%DOCSDIR%%/abut.ps
 X%%DOCSDIR%%/adwarp.ps
 X%%DOCSDIR%%/afni200.ps
 X%%DOCSDIR%%/afni_aux.ps
 X%%DOCSDIR%%/afni_plugins.ps
 X%%DOCSDIR%%/afni_register.ps
 X%%DOCSDIR%%/buckets.ps
 X%%DOCSDIR%%/byteorder.ps
 X%%DOCSDIR%%/ccalc.ps
 X%%DOCSDIR%%/cdf.ps
 X%%DOCSDIR%%/count.ps
 X%%DOCSDIR%%/fim2.ps
 X%%DOCSDIR%%/float_scan.ps
 X%%DOCSDIR%%/from3d.ps
 X%%DOCSDIR%%/ftosh.ps
 X%%DOCSDIR%%/imand.ps
 X%%DOCSDIR%%/imaver.ps
 X%%DOCSDIR%%/imcalc.ps
 X%%DOCSDIR%%/imdump.ps
 X%%DOCSDIR%%/immask.ps
 X%%DOCSDIR%%/imreg.ps
 X%%DOCSDIR%%/imrotate.ps
 X%%DOCSDIR%%/imstack.ps
 X%%DOCSDIR%%/imstat.ps
 X%%DOCSDIR%%/imupsam.ps
 X%%DOCSDIR%%/mritopgm.ps
 X%%DOCSDIR%%/nsize.ps
 X%%DOCSDIR%%/p2t.ps
 X%%DOCSDIR%%/sfim.ps
 X%%DOCSDIR%%/sqwave.ps
 X%%DOCSDIR%%/tfim.ps
 X%%DOCSDIR%%/to3d.ps
 X%%DOCSDIR%%/waver.ps
 X@dirrm %%DOCSDIR%%
 X@dirrm %%DATADIR%%
 END-of-afni/pkg-plist
 exit
 
 
 --Boundary-00=_5jb1DZHX13yoXJe--
Responsible-Changed-From-To: freebsd-ports-bugs->vd 
Responsible-Changed-By: vd 
Responsible-Changed-When: Tue Jan 24 10:15:23 UTC 2006 
Responsible-Changed-Why:  
I will take it 

http://www.freebsd.org/cgi/query-pr.cgi?pr=90752 
State-Changed-From-To: feedback->closed 
State-Changed-By: vd 
State-Changed-When: Wed Jan 25 17:52:12 UTC 2006 
State-Changed-Why:  
New port added with slight modifications, thanks! 

http://www.freebsd.org/cgi/query-pr.cgi?pr=90752 

>Unformatted:
