From fernan@pi.iib.unsam.edu.ar  Mon Dec  5 14:48:59 2005
Return-Path: <fernan@pi.iib.unsam.edu.ar>
Received: from mx1.FreeBSD.org (mx1.freebsd.org [216.136.204.125])
	by hub.freebsd.org (Postfix) with ESMTP id 3AF9716A41F
	for <FreeBSD-gnats-submit@freebsd.org>; Mon,  5 Dec 2005 14:48:59 +0000 (GMT)
	(envelope-from fernan@pi.iib.unsam.edu.ar)
Received: from smtp.unsam.edu.ar (smtp.unsam.edu.ar [170.210.48.3])
	by mx1.FreeBSD.org (Postfix) with ESMTP id 7458F43D68
	for <FreeBSD-gnats-submit@freebsd.org>; Mon,  5 Dec 2005 14:48:56 +0000 (GMT)
	(envelope-from fernan@pi.iib.unsam.edu.ar)
Received: from pi.iib.unsam.edu.ar (pi.iib.unsam.edu.ar [192.168.10.11])
	by smtp.unsam.edu.ar (8.12.6/8.12.6) with ESMTP id jB5EmU1N028443;
	Mon, 5 Dec 2005 11:48:30 -0300 (ART)
	(envelope-from fernan@pi.iib.unsam.edu.ar)
Received: from pi.iib.unsam.edu.ar (localhost [127.0.0.1])
	by pi.iib.unsam.edu.ar (8.13.1/8.13.1) with ESMTP id jB5EmX1D069087;
	Mon, 5 Dec 2005 11:48:33 -0300 (ART)
	(envelope-from fernan@pi.iib.unsam.edu.ar)
Received: (from fernan@localhost)
	by pi.iib.unsam.edu.ar (8.13.1/8.13.1/Submit) id jB5EmXno069086;
	Mon, 5 Dec 2005 11:48:33 -0300 (ART)
	(envelope-from fernan)
Message-Id: <200512051448.jB5EmXno069086@pi.iib.unsam.edu.ar>
Date: Mon, 5 Dec 2005 11:48:33 -0300 (ART)
From: Fernan Aguero <fernan@iib.unsam.edu.ar>
Reply-To: Fernan Aguero <fernan@iib.unsam.edu.ar>
To: FreeBSD-gnats-submit@freebsd.org
Cc: Kris Kennaway <kris@obsecurity.org>
Subject: unbreak biology/t_coffee
X-Send-Pr-Version: 3.113
X-GNATS-Notify:

>Number:         89977
>Category:       ports
>Synopsis:       unbreak biology/t_coffee
>Confidential:   no
>Severity:       serious
>Priority:       medium
>Responsible:    tdb
>State:          closed
>Quarter:        
>Keywords:       
>Date-Required:  
>Class:          maintainer-update
>Submitter-Id:   current-users
>Arrival-Date:   Mon Dec 05 14:50:02 GMT 2005
>Closed-Date:    Tue Dec 06 15:14:40 GMT 2005
>Last-Modified:  Tue Dec 06 15:14:40 GMT 2005
>Originator:     Fernan Aguero
>Release:        FreeBSD 4.10-RELEASE i386
>Organization:
IIB-UNSAM
>Environment:

FreeBSD pi.iib.unsam.edu.ar 4.10-RELEASE FreeBSD 4.10-RELEASE #0: Wed May 26 12:56:43 ART 2004 fernan@pi.iib.unsam.edu.ar:/usr/obj/usr/src/sys/PI  i386

	
>Description:
	

	Update t_coffee to 3.18 and fix the fetch problems.

	CC goes to Kris because of:
	[ports-i386@pointyhat.freebsd.org: t_coffee-3.14 failed on i386 7]
	
>How-To-Repeat:
	
	
>Fix:

	



--- t_coffee.diff begins here ---
diff -ruN /usr/ports/biology/t_coffee/Makefile t_coffee/Makefile
--- /usr/ports/biology/t_coffee/Makefile	Sun Dec  4 09:56:09 2005
+++ t_coffee/Makefile	Mon Dec  5 08:43:09 2005
@@ -7,7 +7,7 @@
 #
 
 PORTNAME=	t_coffee
-PORTVERSION=	3.14
+PORTVERSION=	3.18
 CATEGORIES=	biology
 MASTER_SITES=	http://igs-server.cnrs-mrs.fr/~cnotred/Packages/
 DISTNAME=	T-COFFEE_distribution_Version_${PORTVERSION}
@@ -17,8 +17,6 @@
 
 BUILD_DEPENDS=	clustalw:${PORTSDIR}/biology/clustalw
 RUN_DEPENDS=	${BUILD_DEPENDS}
-
-BROKEN=		Unfetchable
 
 BUILD_WRKSRC=	${WRKSRC}/t_coffee_source
 MAKE_ENV=	MV=${MV} USER_BIN=${PREFIX}/bin \
diff -ruN /usr/ports/biology/t_coffee/distinfo t_coffee/distinfo
--- /usr/ports/biology/t_coffee/distinfo	Mon Oct 17 05:23:15 2005
+++ t_coffee/distinfo	Mon Dec  5 08:45:26 2005
@@ -1,2 +1,2 @@
-MD5 (T-COFFEE_distribution_Version_3.14.tar.gz) = ad467933434fbe7137b08aea30a79922
-SIZE (T-COFFEE_distribution_Version_3.14.tar.gz) = 1533171
+MD5 (T-COFFEE_distribution_Version_3.18.tar.gz) = e671383b9e6b90ded56c615acd2f51c4
+SIZE (T-COFFEE_distribution_Version_3.18.tar.gz) = 1540558
--- t_coffee.diff ends here ---

>Release-Note:
>Audit-Trail:
Responsible-Changed-From-To: freebsd-ports-bugs->tdb 
Responsible-Changed-By: tdb 
Responsible-Changed-When: Mon Dec 5 18:20:02 GMT 2005 
Responsible-Changed-Why:  
I'll look at this. 

http://www.freebsd.org/cgi/query-pr.cgi?pr=89977 
State-Changed-From-To: open->closed 
State-Changed-By: tdb 
State-Changed-When: Tue Dec 6 15:14:26 GMT 2005 
State-Changed-Why:  
Committed with (approved) modifications. Thanks! 

http://www.freebsd.org/cgi/query-pr.cgi?pr=89977 
>Unformatted:
