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Message-Id: <4246A914.6070302@ece.unm.edu>
Date: Sun, 27 Mar 2005 05:37:40 -0700
From: "David A. Bader" <dbader@ece.unm.edu>
To: FreeBSD-gnats-submit@freebsd.org
Cc: arareko@yahoo.com, ben@algroup.co.uk
Subject: ports update net/mpich 1.2.5.2 -> 1.2.6

>Number:         79279
>Category:       ports
>Synopsis:       ports update net/mpich 1.2.5.2 -> 1.2.6
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    thierry
>State:          closed
>Quarter:        
>Keywords:       
>Date-Required:  
>Class:          maintainer-update
>Submitter-Id:   current-users
>Arrival-Date:   Sun Mar 27 12:40:02 GMT 2005
>Closed-Date:    Sat May 14 12:27:04 GMT 2005
>Last-Modified:  Sat May 14 12:27:04 GMT 2005
>Originator:     David A. Bader
>Release:        FreeBSD 5.2.1-RELEASE-p13 i386
>Organization:
University of New Mexico
>Environment:
 
 System: FreeBSD hostname22 5.2.1-RELEASE-p13 FreeBSD 5.2.1-RELEASE-p13 
 #0: Thu Dec 16 08:08:28 MST 2004 root@mage.theuncollec
 tive.com:/usr/src/sys/i386/compile/MAGE i386
 
>Description:
        
      The following patch updates /usr/ports/net/mpich from version 
 1.2.5.2 to 1.2.6 and fixes building problems by upgrading from jdk13 to 
 jdk14.
 
>How-To-Repeat:
        
>Fix:
 
 begin 644 mpich-patch.gz
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 J[H85BWK]EF07G3:0+O^(5]Y^04="WI`L/43./H';[_?^"XP]X*!4/0``
 `
 end
 
 -- 
 David A. Bader                                  Office: 505-277-6724
 Associate Professor and Regents' Lecturer       FAX:    505-277-1439
 Electrical and Computer Engineering Department
 University of New Mexico                          dbader@ece.unm.edu
 Albuquerque, NM  87131                http://www.ece.unm.edu/~dbader
 
 
>Release-Note:
>Audit-Trail:
Responsible-Changed-From-To: gnats-admin->freebsd-ports-bugs 
Responsible-Changed-By: thierry 
Responsible-Changed-When: Mon Mar 28 11:38:30 GMT 2005 
Responsible-Changed-Why:  

Rescue from pending requests. 


http://www.freebsd.org/cgi/query-pr.cgi?pr=79279 
Class-Changed-From-To: sw-bug->maintainer-update 
Class-Changed-By: linimon 
Class-Changed-When: Mon Apr 4 03:08:04 GMT 2005 
Class-Changed-Why:  
Reformat properly. 

http://www.freebsd.org/cgi/query-pr.cgi?pr=79279 

Adding to audit trail: see also ports/78922.
State-Changed-From-To: open->feedback 
State-Changed-By: thierry 
State-Changed-When: Wed Apr 6 21:47:34 GMT 2005 
State-Changed-Why:  

Hereunder is a patch with some modifications: 

- pet portlint; 

- use the new syntax for configure -cflags and -rsh; 

- define USE_JAVA; 

- fix ownership of installed files when built with !root; 

- add a test target; 

- fix plist; 

- don't try to build with java when PACKAGE_BUILDING, in order to 
package it. 

With this patch, it builds and run fine on 5.3 and 4.11. 
However, I have some questions: 

- this port uses libtool and install a .so file, but it only defines 
HAS_CONFIGURE; have you to tried to define USE_LIBTOOL_VER? 

- why don't you pass --enable-sharedlib to configure? 

- should we bump PORTREVISION of all ports depending on mpich? 

--- mpichPR.diff begins here --- 
diff -urN net/mpich.PR79279/Makefile net/mpich/Makefile 
--- net/mpich.PR79279/Makefile	Wed Apr  6 21:28:17 2005 
+++ net/mpich/Makefile	Wed Apr  6 23:14:28 2005 
@@ -11,13 +11,13 @@ 
MASTER_SITES=	ftp://ftp.mcs.anl.gov/pub/mpi/ 
DIST_SUBDIR=	mpich 

-MAINTAINER=	dbader@ece.unm.edu 
-COMMENT=	Message Passing Interface (MPI) Library 
- 
PATCH_SITES=	ftp://ftp.mcs.anl.gov/pub/mpi/patch/${PORTVERSION}/ 
PATCHFILES=	10039 10243 10246 

-CONFIGURE_ARGS=	-cflags="${CFLAGS}" -prefix=${PREFIX}/mpich 
+MAINTAINER=	dbader@ece.unm.edu 
+COMMENT=	Message Passing Interface (MPI) Library 
+ 
+CONFIGURE_ARGS=	-prefix=${PREFIX}/mpich 

.if defined(WITHOUT_X11) 
WITHOUT_TK=	yes 
@@ -39,39 +39,26 @@ 
PLIST_SUB+=	TK="" 
.endif 

-.if defined(WITHOUT_JAVA) 
-CONFIGURE_ARGS+= --without-java 
+.if defined(WITHOUT_JAVA) || defined(PACKAGE_BUILDING) 
+CONFIGURE_ARGS+=	--without-java 
PLIST_SUB+=	JAVA="@comment " 
.else 
-RUN_DEPENDS+=	javavm:${PORTSDIR}/java/javavmwrapper  
-		${LOCALBASE}/etc/javavms:${PORTSDIR}/java/jdk14 
-BUILD_DEPENDS+=	javavm:${PORTSDIR}/java/javavmwrapper  
-		${LOCALBASE}/etc/javavms:${PORTSDIR}/java/jdk14 
-PLIST_SUB+=     JAVA="" 
+USE_JAVA=	yes 
+JAVA_VERSION=	1.4+ 
+RUN_DEPENDS+=	javavm:${PORTSDIR}/java/javavmwrapper 
+BUILD_DEPENDS+=	javavm:${PORTSDIR}/java/javavmwrapper 
+PLIST_SUB+=	JAVA="" 
.endif 

HAS_CONFIGURE=	yes 

-.include <bsd.port.pre.mk> 
- 
-# To disable ssh client support, build with WITHOUT_SSH set. 
-# Use ssh instead of rsh 
-.if !defined(WITHOUT_SSH) 
-.if ${OSVERSION} >= 400016 && exists(/usr/bin/ssh) 
-CONFIGURE_ARGS+= -rsh="/usr/bin/ssh" 
-.elif defined(WITH_SSH) || exists(${LOCALBASE}/bin/ssh) 
-RUN_DEPENDS+=   ssh:${PORTSDIR}/security/ssh 
-CONFIGURE_ARGS+= -rsh="${LOCALBASE}/bin/ssh" 
-.endif 
-.endif 
- 
ALL_TARGET= 

MANPREFIX=	${PREFIX}/mpich 

-MAN1= 		MPI.1 cleanipcs.1 mpiCC.1 mpicc.1 mpif77.1 mpif90.1 mpiman.1		 
+MAN1=		MPI.1 cleanipcs.1 mpiCC.1 mpicc.1 mpif77.1 mpif90.1 mpiman.1		 
mpireconfig.1 mpirun.1 Jumpshots.1 chp4_servs.1 tstmachines.1 
-MAN3= 		MPI_File_get_position.3 MPI_File_preallocate.3				 
+MAN3=		MPI_File_get_position.3 MPI_File_preallocate.3				 
MPI_2DOUBLE_PRECISION.3 MPI_2INT.3 MPI_2INTEGER.3 MPI_2REAL.3		 
MPI_ANY_SOURCE.3 MPI_ANY_TAG.3 MPI_Abort.3 MPI_Address.3 MPI_Aint.3	 
MPI_Allgatherv.3 MPI_Allreduce.3 MPI_Alltoall.3 MPI_Alltoallv.3		 
@@ -169,7 +156,7 @@ 
MPI_File_read_at_all_end.3 MPI_File_seek_shared.3 MPI_File_set_view.3	 
MPI_File_write_ordered_begin.3 MPIO_Request_f2c.3			 
MPI_File_write_at_all_begin.3 
-MAN4= 		CLOG_Init.4 CLOG_commtype.4 CLOG_cput.4 CLOG_csync.4			 
+MAN4=		CLOG_Init.4 CLOG_commtype.4 CLOG_cput.4 CLOG_csync.4			 
CLOG_get_new_event.4 CLOG_get_new_state.4 CLOG_init_buffers.4		 
CLOG_mergelogs.4 CLOG_mergend.4 CLOG_msgtype.4 CLOG_procbuf.4 MPE.4	 
CLOG_newbuff.4 CLOG_reclen.4 CLOG_reinit_buff.4 CLOG_treesetup.4	 
@@ -188,6 +175,32 @@ 
CLOG_Output.4 CLOG_nodebuffer2disk.4 CLOG_rectype.4			 
MPE_Describe_event.4 MPE_Get_mouse_press.4 MPE_Make_color_array.4	 
MPE_Print_datatype_unpack_action.4 
-INSTALL_TARGET=	install 
+ 
+.include <bsd.port.pre.mk> 
+ 
+# To disable ssh client support, build with WITHOUT_SSH set. 
+# Use ssh instead of rsh 
+.if !defined(WITHOUT_SSH) 
+.if ${OSVERSION} >= 400016 && exists(/usr/bin/ssh) 
+CONFIGURE_ENV+=	RSHCOMMAND="/usr/bin/ssh" 
+.elif defined(WITH_SSH) || exists(${LOCALBASE}/bin/ssh) 
+RUN_DEPENDS+=	${LOCALBASE}/bin/ssh:${PORTSDIR}/security/ssh 
+CONFIGURE_ENV+=	RSHCOMMAND="${LOCALBASE}/bin/ssh" 
+.endif 
+.endif 
+ 
+post-install: 
+	${CHOWN} -R ${BINOWN}:${BINGRP} ${PREFIX}/mpich/bin ${PREFIX}/mpich/lib 
+	${CHOWN} -R ${SHAREOWN}:${SHAREGRP} ${PREFIX}/mpich/doc ${PREFIX}/mpich/include	 
+		${PREFIX}/mpich/share 
+.if ! defined(WITHOUT_JAVA) && ! defined(PACKAGE_BUILDING) 
+	${CHOWN} -R ${SHAREOWN}:${SHAREGRP} ${PREFIX}/mpich/logfiles 
+.endif 
+ 
+.if defined(MAINTAINER_MODE) 
+test:	build 
+	(cd ${WRKSRC}/examples/test ;	 
+	${MAKE} testing) 
+.endif 

.include <bsd.port.post.mk> 
diff -urN net/mpich.PR79279/pkg-plist net/mpich/pkg-plist 
--- net/mpich.PR79279/pkg-plist	Wed Apr  6 21:28:17 2005 
+++ net/mpich/pkg-plist	Wed Apr  6 23:35:33 2005 
@@ -1,6 +1,14 @@ 
+%%JAVA%%mpich/bin/clog2TOslog2 
mpich/bin/clog2alog 
+%%JAVA%%mpich/bin/clog2print 
+%%JAVA%%mpich/bin/clogTOslog2 
mpich/bin/clog_print 
+%%JAVA%%mpich/bin/clogprint 
+%%JAVA%%mpich/bin/jumpshot 
+%%JAVA%%mpich/bin/logconvertor 
mpich/bin/mpicc 
+mpich/bin/mpichversion 
+mpich/bin/mpicxx 
mpich/bin/mpif77 
mpich/bin/mpif90 
mpich/bin/mpiman 
@@ -19,19 +27,17 @@ 
mpich/bin/mpirun_dbg.ladebug 
mpich/bin/mpirun_dbg.totalview 
mpich/bin/mpirun_dbg.xxgdb 
+%%JAVA%%mpich/bin/rlogTOslog2 
+%%JAVA%%mpich/bin/rlog_check_timeorder 
+%%JAVA%%mpich/bin/rlog_print 
+%%JAVA%%mpich/bin/rlogprint 
mpich/bin/serv_p4 
+%%JAVA%%mpich/bin/slog2navigator 
+%%JAVA%%mpich/bin/slog2print 
mpich/bin/tarch 
mpich/bin/tdevice 
-mpich/bin/mpichversion 
-mpich/bin/mpicxx 
-mpich/bin/clogprint 
-mpich/bin/clogTOslog2 
-mpich/bin/clog2print 
-mpich/bin/clog2TOslog2 
-mpich/bin/slog2navigator 
-mpich/bin/slog2print 
-mpich/bin/logconvertor 
-%%JAVA%%mpich/bin/jumpshot 
+%%JAVA%%mpich/bin/traceTOslog2.in 
+%%JAVA%%mpich/bin/traceprint.in 
mpich/doc/mpeman.pdf 
mpich/doc/mpeman.ps.gz 
mpich/doc/mpichman-chp4.pdf 
@@ -264,19 +270,23 @@ 
%%JAVA%%mpich/lib/clogprint.jar 
%%JAVA%%mpich/lib/jumpshot.jar 
%%JAVA%%mpich/lib/jumpshot_launcher.jar 
+%%JAVA%%mpich/lib/libTraceInput.la 
+%%JAVA%%mpich/lib/libTraceInput.so 
%%JAVA%%mpich/lib/logconvertor.jar 
%%JAVA%%mpich/lib/slog2navigator.jar 
%%JAVA%%mpich/lib/slog2printrecur.jar 
%%JAVA%%mpich/lib/slog2printserial.jar 
%%JAVA%%mpich/lib/traceTOslog2.jar 
%%JAVA%%mpich/lib/traceprint.jar 
-mpich/logfiles/fpilog.clog 
-mpich/logfiles/fpilog.slog2 
+%%JAVA%%mpich/logfiles/barrier.rlog 
+%%JAVA%%mpich/logfiles/fpilog.clog 
+%%JAVA%%mpich/logfiles/fpilog.slog2 
mpich/man/mandesc 
mpich/sbin/chkserv 
mpich/sbin/chp4_servs 
mpich/sbin/cleanipcs 
mpich/sbin/mpiuninstall 
+@unexec rm %D/mpich/sbin/mpiuninstall.old >/dev/null 2>&1 || true 
mpich/sbin/tstmachines 
mpich/share/Makefile.sample 
mpich/share/examples/Makefile 
@@ -599,7 +609,7 @@ 
@dirrm mpich/man/man3 
@dirrm mpich/man/man1 
@dirrm mpich/man 
-@dirrm mpich/logfiles 
+%%JAVA%%@dirrm mpich/logfiles 
@dirrm mpich/lib/shared 
@dirrm mpich/lib 
@dirrm mpich/include/mpi2c++ 
--- mpichPR.diff ends here --- 



Responsible-Changed-From-To: freebsd-ports-bugs->thierry 
Responsible-Changed-By: thierry 
Responsible-Changed-When: Wed Apr 6 21:47:34 GMT 2005 
Responsible-Changed-Why:  

Take it. 


http://www.freebsd.org/cgi/query-pr.cgi?pr=79279 

From: "Peter C. Lai" <sirmoo@cowbert.2y.net>
To: bug-followup@FreeBSD.org, dbader@ece.unm.edu
Cc:  
Subject: Re: ports/79279: ports update net/mpich 1.2.5.2 -> 1.2.6
Date: Mon, 2 May 2005 20:59:58 -0400

 The second patch proposed by Thierry needs to be grabbed from the raw email,
 not whatever was pasted in the pr followup, because otherwise the patch
 is malformed (no spaces, etc.).
 Reference to http://www.freebsd.org/cgi/getmsg.cgi?fetch=1111965+1121282+/usr/local/www/db/text/2005/freebsd-ports-bugs/20050410.freebsd-ports-bugs+raw
 
 -- 
 Peter C. Lai
 University of Connecticut
 Dept. of Molecular and Cell Biology
 Yale University School of Medicine
 SenseLab | Research Assistant
 http://cowbert.2y.net/
 
State-Changed-From-To: feedback->closed 
State-Changed-By: thierry 
State-Changed-When: Sat May 14 12:17:16 GMT 2005 
State-Changed-Why:  

Committed, thanks! 

Note: NAKATA Maho has forwarded your approval to me, but 
there are some pending questions 

- this port uses libtool and install a .so file, but it only defines  
HAS_CONFIGURE; have you to tried to define USE_LIBTOOL_VER?  

- why don't you pass --enable-sharedlib to configure?  

- should we bump PORTREVISION of all ports depending on mpich? 


http://www.freebsd.org/cgi/query-pr.cgi?pr=79279 
>Unformatted:
