From fernan@pi.iib.unsam.edu.ar  Thu Sep 30 19:49:01 2004
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Date: Thu, 30 Sep 2004 16:32:33 -0300 (ART)
From: Fernan Aguero <fernan@iib.unsam.edu.ar>
Reply-To: Fernan Aguero <fernan@iib.unsam.edu.ar>
To: FreeBSD-gnats-submit@freebsd.org
Cc: dbader@ece.unm.edu
Subject: update biology/phylip to 3.62
X-Send-Pr-Version: 3.113
X-GNATS-Notify:

>Number:         72212
>Category:       ports
>Synopsis:       update biology/phylip to 3.62
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    pav
>State:          closed
>Quarter:        
>Keywords:       
>Date-Required:  
>Class:          update
>Submitter-Id:   current-users
>Arrival-Date:   Thu Sep 30 19:50:19 GMT 2004
>Closed-Date:    Mon Oct 11 22:26:53 GMT 2004
>Last-Modified:  Mon Oct 11 22:26:53 GMT 2004
>Originator:     Fernan Aguero
>Release:        FreeBSD 4.10-RELEASE i386
>Organization:
IIB-UNSAM
>Environment:

FreeBSD pi.iib.unsam.edu.ar 4.10-RELEASE FreeBSD 4.10-RELEASE #0: Wed May 26 12:56:43 ART 2004 fernan@pi.iib.unsam.edu.ar:/usr/obj/usr/src/sys/PI  i386

	
>Description:
	

>How-To-Repeat:
	
	
>Fix:

	
	Apply the attached diff.


--- phylip.diff begins here ---
diff -ruN /usr/ports/biology/phylip/Makefile phylip/Makefile
--- /usr/ports/biology/phylip/Makefile	Sat Feb  7 01:04:34 2004
+++ phylip/Makefile	Thu Sep 30 16:24:01 2004
@@ -6,11 +6,9 @@
 #
 
 PORTNAME=	phylip
-PORTVERSION=	3.6.b
+PORTVERSION=	3.62
 CATEGORIES=	biology
-MASTER_SITES=	ftp://evolution.genetics.washington.edu/pub/phylip/phylip36/
-DISTNAME=	${PORTNAME}
-DIST_SUBDIR=	${PORTNAME}-${PORTVERSION}
+MASTER_SITES=	ftp://evolution.genetics.washington.edu/pub/phylip/
 
 MAINTAINER=	dbader@ece.unm.edu
 COMMENT=	A Phylogeny Inference Package
diff -ruN /usr/ports/biology/phylip/distinfo phylip/distinfo
--- /usr/ports/biology/phylip/distinfo	Sat Apr  3 01:03:36 2004
+++ phylip/distinfo	Thu Sep 30 16:16:45 2004
@@ -1,2 +1,2 @@
-MD5 (phylip-3.6.b/phylip.tar.gz) = ae6dd33ac51682527f5bf1fdcef6d050
-SIZE (phylip-3.6.b/phylip.tar.gz) = 831905
+MD5 (phylip-3.62.tar.gz) = 2f3858d2628e499cb6d7a817f359364b
+SIZE (phylip-3.62.tar.gz) = 1046539
--- phylip.diff ends here ---

>Release-Note:
>Audit-Trail:
State-Changed-From-To: open->feedback 
State-Changed-By: pav 
State-Changed-When: Fri Oct 1 19:32:08 GMT 2004 
State-Changed-Why:  
Asked maintainer for approval. 


Responsible-Changed-From-To: freebsd-ports-bugs->pav 
Responsible-Changed-By: pav 
Responsible-Changed-When: Fri Oct 1 19:32:08 GMT 2004 
Responsible-Changed-Why:  
Handle. 

http://www.freebsd.org/cgi/query-pr.cgi?pr=72212 

From: Pav Lucistnik <pav@FreeBSD.org>
To: freebsd-gnats-submit@FreeBSD.org, fernan@iib.unsam.edu.ar,
	dbader@ece.unm.edu
Cc:  
Subject: Re: ports/72212: update biology/phylip to 3.62
Date: Fri, 01 Oct 2004 21:32:05 +0200

 Dear maintainer of FreeBSD biology/phylip, please take a look at
 
 http://www.freebsd.org/cgi/query-pr.cgi?q=72212
 
 Do you approve this update?
 
 -- 
 Pav Lucistnik <pav@oook.cz>
               <pav@FreeBSD.org>
 
 You have acquired a scroll entitled 'irk gleknow mizk' (n).
 This is an IBM Manual scroll.
 You are permanently confused.

From: "David A. Bader" <dbader@ece.unm.edu>
To: pav@FreeBSD.org
Cc: freebsd-gnats-submit@FreeBSD.org, fernan@iib.unsam.edu.ar
Subject: Re: ports/72212: update biology/phylip to 3.62
Date: Fri, 01 Oct 2004 13:35:30 -0600

 Yes, I approve it,
 -david
 
 Pav Lucistnik wrote:
 
 >Dear maintainer of FreeBSD biology/phylip, please take a look at
 >
 >http://www.freebsd.org/cgi/query-pr.cgi?q=72212
 >
 >Do you approve this update?
 >
 >  
 >
 
 -- 
 David A. Bader                                  Office: 505-277-6724
 Associate Professor and Regents' Lecturer       FAX:    505-277-1439
 Electrical and Computer Engineering Department
 University of New Mexico                          dbader@ece.unm.edu
 Albuquerque, NM  87131                http://www.ece.unm.edu/~dbader
 
 
State-Changed-From-To: feedback->open 
State-Changed-By: pav 
State-Changed-When: Fri Oct 1 19:53:21 GMT 2004 
State-Changed-Why:  
Waiting for unfreeze 

http://www.freebsd.org/cgi/query-pr.cgi?pr=72212 

From: Fernan Aguero <fernan@iib.unsam.edu.ar>
To: Pav Lucistnik <pav@FreeBSD.org>
Cc: FreeBSD GNATS PR Submission <freebsd-gnats-submit@FreeBSD.org>,
	dbader@ece.unm.edu
Subject: Re: ports/72212: update biology/phylip to 3.62
Date: Wed, 6 Oct 2004 17:54:34 -0300

 --4Ckj6UjgE2iN1+kY
 Content-Type: text/plain; charset=us-ascii
 Content-Disposition: inline
 
 +----[ Pav Lucistnik <pav@FreeBSD.org> (01.Oct.2004 16:58):
 |
 | Synopsis: update biology/phylip to 3.62
 | 
 | State-Changed-From-To: feedback->open
 | State-Changed-By: pav
 | State-Changed-When: Fri Oct 1 19:53:21 GMT 2004
 | State-Changed-Why: 
 | Waiting for unfreeze
 | 
 | http://www.freebsd.org/cgi/query-pr.cgi?pr=72212
 |
 +----]
 
 Sorry to bother again. I've just found that the port is not
 installing the font files needed to use the drawtree and
 drawgram programs.
 
 Attached is a diff against the Makefile and pkg-plist 
 to fix this.
 
 The font files are installed in DATADIR.
 
 Fernan
 
 -- 
 Fernan Aguero -  fernan at iib.unsam.edu.ar
 Phone: +54 11 4580-7255/7 ext 310, Fax: +54 11 4752-9639
 Check http://genoma.unsam.edu.ar/~fernan for more info.
 
 --4Ckj6UjgE2iN1+kY
 Content-Type: text/plain; charset=us-ascii
 Content-Disposition: attachment; filename="Makefile.diff"
 
 --- /usr/ports/biology/phylip/Makefile	Sat Feb  7 01:04:34 2004
 +++ Makefile	Wed Oct  6 17:51:23 2004
 @@ -6,11 +6,9 @@
  #
  
  PORTNAME=	phylip
 -PORTVERSION=	3.6.b
 +PORTVERSION=	3.62
  CATEGORIES=	biology
 -MASTER_SITES=	ftp://evolution.genetics.washington.edu/pub/phylip/phylip36/
 -DISTNAME=	${PORTNAME}
 -DIST_SUBDIR=	${PORTNAME}-${PORTVERSION}
 +MASTER_SITES=	ftp://evolution.genetics.washington.edu/pub/phylip/
  
  MAINTAINER=	dbader@ece.unm.edu
  COMMENT=	A Phylogeny Inference Package
 @@ -37,10 +35,16 @@
  		pars.html penny.html phylip.gif proml.html promlk.html \
  		protdist.html protpars.html restdist.html restml.html \
  		retree.html seqboot.html sequence.html treedist.html
 +FONTFILES= font1 font2 font3 font4 font5 font6
  
  do-install:
  .for f in ${BINARIES}
  	${INSTALL_PROGRAM} ${BUILD_WRKSRC}/${f} ${PREFIX}/bin
 +.endfor
 +
 +	${MKDIR} ${DATADIR}
 +.for font in ${FONTFILES}
 +	${INSTALL_DATA} ${BUILD_WRKSRC}/${font} ${DATADIR}
  .endfor
  .if !defined(NOPORTDOCS)
  	${MKDIR} ${DOCSDIR}
 
 --4Ckj6UjgE2iN1+kY
 Content-Type: text/plain; charset=us-ascii
 Content-Disposition: attachment; filename="pkg-plist.diff"
 
 --- /usr/ports/biology/phylip/pkg-plist	Sat Oct 25 01:18:24 2003
 +++ pkg-plist	Wed Oct  6 17:52:19 2004
 @@ -75,4 +75,11 @@
  %%PORTDOCS%%%%DOCSDIR%%/seqboot.html
  %%PORTDOCS%%%%DOCSDIR%%/sequence.html
  %%PORTDOCS%%%%DOCSDIR%%/treedist.html
 +%%DATADIR%%/font1
 +%%DATADIR%%/font2
 +%%DATADIR%%/font3
 +%%DATADIR%%/font4
 +%%DATADIR%%/font5
 +%%DATADIR%%/font6
 +@dirrm %%DATADIR%%
  %%PORTDOCS%%@dirrm %%DOCSDIR%%
 
 --4Ckj6UjgE2iN1+kY--
State-Changed-From-To: open->closed 
State-Changed-By: pav 
State-Changed-When: Mon Oct 11 22:26:39 GMT 2004 
State-Changed-Why:  
Committed, thanks! 

http://www.freebsd.org/cgi/query-pr.cgi?pr=72212 
>Unformatted:
