From fernan@pi.iib.unsam.edu.ar  Tue Aug 10 18:21:01 2004
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Date: Tue, 10 Aug 2004 15:12:10 -0300 (ART)
From: Fernan Aguero <fernan@iib.unsam.edu.ar>
Reply-To: Fernan Aguero <fernan@iib.unsam.edu.ar>
To: FreeBSD-gnats-submit@freebsd.org
Cc:
Subject: [new port] biology/finchtv a DNA sequence trace viewer
X-Send-Pr-Version: 3.113
X-GNATS-Notify:

>Number:         70271
>Category:       ports
>Synopsis:       [new port] biology/finchtv a DNA sequence trace viewer
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    thierry
>State:          closed
>Quarter:        
>Keywords:       
>Date-Required:  
>Class:          change-request
>Submitter-Id:   current-users
>Arrival-Date:   Tue Aug 10 18:30:26 GMT 2004
>Closed-Date:    Fri Mar 11 21:17:11 GMT 2005
>Last-Modified:  Fri Mar 11 21:17:11 GMT 2005
>Originator:     Fernan Aguero
>Release:        FreeBSD 4.10-RELEASE-p2 i386
>Organization:
IIB-UNSAM
>Environment:

FreeBSD pi.iib.unsam.edu.ar 4.10-RELEASE-p2 FreeBSD 4.10-RELEASE #0: Wed May 26 12:56:43 ART 2004 fernan@pi.iib.unsam.edu.ar:/usr/obj/usr/src/sys/PI  i386

	
>Description:
	
	It is a linux binary, it's running fine for me. It comes with
	three DNA sequence trace files (chromatograms) that anyone can
	open to test the program.
	
>How-To-Repeat:
	
	
>Fix:

	



--- finchtv.shar begins here ---
# This is a shell archive.  Save it in a file, remove anything before
# this line, and then unpack it by entering "sh file".  Note, it may
# create directories; files and directories will be owned by you and
# have default permissions.
#
# This archive contains:
#
#	finchtv
#	finchtv/Makefile
#	finchtv/pkg-descr
#	finchtv/distinfo
#	finchtv/pkg-plist
#
echo c - finchtv
mkdir -p finchtv > /dev/null 2>&1
echo x - finchtv/Makefile
sed 's/^X//' >finchtv/Makefile << 'END-of-finchtv/Makefile'
X# vim:ts=8:sw=8:number:nowrap
X# New ports collection makefile for:	FinchTV
X# Date created:		10 Aug 2004
X# Whom:	      		Fernan Aguero <fernan@iib.unsam.edu.ar>
X#
X# $FreeBSD$
X#
X
XPORTNAME=	finchtv
XPORTVERSION=	1.1.0
XCATEGORIES=	biology
XMASTER_SITES=	http://www.geospiza.com/finchtv/download/programs/linux/
XDISTNAME=	${PORTNAME}_${PORTVERSION}
X
XMAINTAINER=	fernan@iib.unsam.edu.ar
XCOMMENT=	A chromatogram trace viewer
X
XUSE_LINUX=	yes
XONLY_FOR_ARCHS=	i386
XNO_BUILD=	yes
X
XDOCS=	License.txt ReleaseNotes.txt FinchTV1-1Help.pdf
X
Xdo-install:
X
X.if !defined(NOPORTDOCS)
X	@ ${MKDIR} ${DOCSDIR}
X
X.for doc in ${DOCS}
X	${INSTALL_MAN} ${WRKSRC}/${doc} ${DOCSDIR}
X.endfor
X
X.endif
X
X	@ ${MKDIR} ${DATADIR}
X	${CP} -R ${WRKSRC}/SampleData/ ${DATADIR}
X
X	${INSTALL_PROGRAM} ${WRKSRC}/finchtv ${PREFIX}/bin
X	${BRANDELF} -t Linux ${PREFIX}/bin/finchtv
X
X.include <bsd.port.mk>
END-of-finchtv/Makefile
echo x - finchtv/pkg-descr
sed 's/^X//' >finchtv/pkg-descr << 'END-of-finchtv/pkg-descr'
XFinchTV is the popular way to view sequence traces on Linux, Mac OSX,
Xand Windows. FinchTV is the only trace viewer that can display an entire
Xtrace in a scalable multi-pane view.
X
XFinchTV reads chromatogram files from the most popular formats. In
Xaddition to displaying a multi-color sequence above the trace, FinchTV
Xdisplays quality values (when available). You can adjust the scale in
Xboth vertical and horizontal directions in either single or multipane
Xviews.
X
XFinchTV can:
Xo print traces (on a single page or control the number of panels printed)
Xo export sequences in FASTA format
Xo open gzipped files
Xo open files with drag and drop
Xo shows additional details about the file (sample ID, run start and stop
X  times, spacing, mobility, lane number, etc.)
X
XWWW: http://www.geospiza.com/finchtv/index.htm
END-of-finchtv/pkg-descr
echo x - finchtv/distinfo
sed 's/^X//' >finchtv/distinfo << 'END-of-finchtv/distinfo'
XMD5 (finchtv_1.1.0.tar.gz) = 8a5cd2333150ab2a4d81f04ed3939d63
XSIZE (finchtv_1.1.0.tar.gz) = 4949840
END-of-finchtv/distinfo
echo x - finchtv/pkg-plist
sed 's/^X//' >finchtv/pkg-plist << 'END-of-finchtv/pkg-plist'
Xbin/finchtv
X%%PORTDOCS%%%%DOCSDIR%%/License.txt
X%%PORTDOCS%%%%DOCSDIR%%/ReleaseNotes.txt
X%%PORTDOCS%%%%DOCSDIR%%/FinchTV1-1Help.pdf
X%%DATADIR%%/78I21_1101.y1.ab1
X%%DATADIR%%/G33P641RB11.scf.gz
X%%DATADIR%%/G33P771FF3.scf
X@dirrm %%DATADIR%%
X%%PORTDOCS%%@dirrm %%DOCSDIR%%
END-of-finchtv/pkg-plist
exit
--- finchtv.shar ends here ---

>Release-Note:
>Audit-Trail:

From: Fernan Aguero <fernan@iib.unsam.edu.ar>
To: FreeBSD GNATS PR Submission <freebsd-gnats-submit@freebsd.org>
Cc:  
Subject: Re: ports/70271: [new port] biology/finchtv a DNA sequence trace viewer
Date: Fri, 15 Oct 2004 17:18:24 -0300

 --oLBj+sq0vYjzfsbl
 Content-Type: text/plain; charset=us-ascii
 Content-Disposition: inline
 
 This PR is getting old!
 
 The attached Makefile and distinfo files bring FinchTV to
 1.2.0
 
 Fernan
 
 -- 
 Fernan Aguero -  fernan at iib.unsam.edu.ar
 Phone: +54 11 4580-7255/7 ext 310, Fax: +54 11 4752-9639
 Check http://genoma.unsam.edu.ar/~fernan for more info.
 
 --oLBj+sq0vYjzfsbl
 Content-Type: text/plain; charset=us-ascii
 Content-Disposition: attachment; filename=Makefile
 
 # vim:ts=8:sw=8:number:nowrap
 # New ports collection makefile for:	FinchTV
 # Date created:		10 Aug 2004
 # Whom:	      		Fernan Aguero <fernan@iib.unsam.edu.ar>
 #
 # $FreeBSD$
 #
 
 PORTNAME=	finchtv
 PORTVERSION=	1.2.0
 CATEGORIES=	biology
 MASTER_SITES=	http://www.geospiza.com/finchtv/download/programs/linux/
 DISTNAME=	${PORTNAME}_${PORTVERSION:S/./_/g}
 
 MAINTAINER=	fernan@iib.unsam.edu.ar
 COMMENT=	A chromatogram trace viewer
 
 USE_LINUX=	yes
 ONLY_FOR_ARCHS=	i386
 NO_BUILD=	yes
 
 DOCS=	License.txt ReleaseNotes.txt FinchTV1-1Help.pdf
 
 do-install:
 
 .if !defined(NOPORTDOCS)
 	@ ${MKDIR} ${DOCSDIR}
 
 .for doc in ${DOCS}
 	${INSTALL_MAN} ${WRKSRC}/${doc} ${DOCSDIR}
 .endfor
 
 .endif
 
 	@ ${MKDIR} ${DATADIR}
 	${CP} -R ${WRKSRC}/SampleData/ ${DATADIR}
 
 	${INSTALL_PROGRAM} ${WRKSRC}/finchtv ${PREFIX}/bin
 	${BRANDELF} -t Linux ${PREFIX}/bin/finchtv
 
 .include <bsd.port.mk>
 
 --oLBj+sq0vYjzfsbl
 Content-Type: text/plain; charset=us-ascii
 Content-Disposition: attachment; filename=distinfo
 
 MD5 (finchtv_1_2_0.tar.gz) = 3f65857c55470d8b8e464f152b0bc667
 SIZE (finchtv_1_2_0.tar.gz) = 7448323
 
 --oLBj+sq0vYjzfsbl--
State-Changed-From-To: open->feedback 
State-Changed-By: thierry 
State-Changed-When: Mon Feb 21 22:26:19 GMT 2005 
State-Changed-Why:  

It seems that this program requires emulators/linux_base-rh-9 
and it depends on several libraries: 

ldd finchtv 
finchtv: 
finchtv: /usr/lib/libstdc++.so.5: version `GLIBCPP_3.2.2' not found (required by finchtv) 
libXft.so.2 => /usr/X11R6/lib/libXft.so.2 (0x285d8000) 
libfreetype.so.6 => /usr/lib/libfreetype.so.6 (0x285ec000) 
libfontconfig.so.1 => /usr/lib/libfontconfig.so.1 (0x2864d000) 
libstdc++.so.5 => /usr/lib/libstdc++.so.5 (0x28672000) 
libexpat.so.0 => /usr/lib/libexpat.so.0 (0x28724000) 
libXt.so.6 => /usr/X11R6/lib/libXt.so.6 (0x28744000) 
libz.so.1 => /usr/lib/libz.so.1 (0x28797000) 
libXmu.so.6 => /usr/X11R6/lib/libXmu.so.6 (0x287a6000) 
libXrender.so.1 => /usr/X11R6/lib/libXrender.so.1 (0x287bc000) 
libXrandr.so.2 => /usr/X11R6/lib/libXrandr.so.2 (0x287c4000) 
libSM.so.6 => /usr/X11R6/lib/libSM.so.6 (0x287c8000) 
libICE.so.6 => /usr/X11R6/lib/libICE.so.6 (0x287d1000) 
libdl.so.2 => /lib/libdl.so.2 (0x287e9000) 
libXext.so.6 => /usr/X11R6/lib/libXext.so.6 (0x287ed000) 
libX11.so.6 => /usr/X11R6/lib/libX11.so.6 (0x287fc000) 
libm.so.6 => /lib/libm.so.6 (0x288f8000) 
libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x28919000) 
libc.so.6 => /lib/libc.so.6 (0x28921000) 
/lib/ld-linux.so.2 => /lib/ld-linux.so.2 (0x285c2000) 

Could you please precise its dependencies? 



Responsible-Changed-From-To: freebsd-ports-bugs->thierry 
Responsible-Changed-By: thierry 
Responsible-Changed-When: Mon Feb 21 22:26:19 GMT 2005 
Responsible-Changed-Why:  

Take it. 


http://www.freebsd.org/cgi/query-pr.cgi?pr=70271 

From: Fernan Aguero <fernan@iib.unsam.edu.ar>
To: Thierry Thomas <thierry@FreeBSD.org>
Cc: freebsd-gnats-submit@FreeBSD.org
Subject: Re: ports/70271: [new port] biology/finchtv a DNA sequence trace viewer
Date: Thu, 10 Mar 2005 12:04:43 -0300

 --9jxsPFA5p3P2qPhR
 Content-Type: text/plain; charset=us-ascii
 Content-Disposition: inline
 
 +----[ Thierry Thomas <thierry@FreeBSD.org> (21.Feb.2005 19:33):
 |
 | It seems that this program requires emulators/linux_base-rh-9
 | and it depends on several libraries:
 | 
 | ldd finchtv
 | finchtv:
 | finchtv: /usr/lib/libstdc++.so.5: version `GLIBCPP_3.2.2' not found (required by finchtv)
 | 	libXft.so.2 => /usr/X11R6/lib/libXft.so.2 (0x285d8000)
 
 	... [rest of list snipped ]
 
 | Could you please precise its dependencies?
 |
 +----]
 
 Thierry, the program is distributed as a static binary, all
 libraries are included. What happened with version 1.2.0 is
 that the authors forgot to include some library, which produced the
 error message that you mention above (GLIBCPP_3.2.2 not
 found). This was not the case for 1.1.0 (the one originally
 submitted in this PR, and is not the case for 1.3.0, the
 version I am submitting now in this followup.)
 
 The program is working for me using linux_base-8-8.0_4.
 Please test and let me know if something else needs to be
 fixed. 
 
 Fernan
 
 PS: see attached shar archive containing 1.3.0
 
 --9jxsPFA5p3P2qPhR
 Content-Type: text/plain; charset=us-ascii
 Content-Disposition: attachment; filename="finchtv.shar"
 
 # This is a shell archive.  Save it in a file, remove anything before
 # this line, and then unpack it by entering "sh file".  Note, it may
 # create directories; files and directories will be owned by you and
 # have default permissions.
 #
 # This archive contains:
 #
 #	finchtv
 #	finchtv/Makefile
 #	finchtv/pkg-descr
 #	finchtv/pkg-plist
 #	finchtv/distinfo
 #	finchtv/pkg-message
 #
 echo c - finchtv
 mkdir -p finchtv > /dev/null 2>&1
 echo x - finchtv/Makefile
 sed 's/^X//' >finchtv/Makefile << 'END-of-finchtv/Makefile'
 X# ex:ts=8
 X# New ports collection makefile for:	FinchTV
 X# Date created:		10 Aug 2004
 X# Whom:	      		Fernan Aguero <fernan@iib.unsam.edu.ar>
 X#
 X# $FreeBSD$
 X#
 X
 XPORTNAME=	finchtv
 XPORTVERSION=	1.3.0
 XCATEGORIES=	biology
 XMASTER_SITES=	http://www.geospiza.com/finchtv/download/programs/linux/
 XDISTNAME=	${PORTNAME}_${PORTVERSION:S/./_/g}
 X
 XMAINTAINER=	fernan@iib.unsam.edu.ar
 XCOMMENT=	A chromatogram trace viewer
 X
 XUSE_LINUX=	yes
 XONLY_FOR_ARCHS=	i386
 XNO_BUILD=	yes
 XPKGMESSAGE=	${WRKDIR}/pkg-message
 X
 Xdo-install:
 X
 X.if !defined(NOPORTDOCS)
 X	@ ${MKDIR} ${DOCSDIR}
 X	${INSTALL_MAN} ${WRKSRC}/License.txt ${DOCSDIR}
 X	${INSTALL_MAN} ${WRKSRC}/ReleaseNotes.txt ${DOCSDIR}
 X	${CP} -R ${WRKSRC}/Help ${DOCSDIR}
 X.endif
 X
 X	@ ${MKDIR} ${EXAMPLESDIR}
 X	${CP} -R ${WRKSRC}/SampleData/ ${EXAMPLESDIR}
 X
 X	${BRANDELF} -t Linux ${WRKSRC}/finchtv
 X	${INSTALL_PROGRAM} ${WRKSRC}/finchtv ${PREFIX}/bin
 X
 Xpost-install:
 X.if !defined(BATCH)
 X	@ ${SED} -e 's#%%DOCSDIR%%#${DOCSDIR}#' ${.CURDIR}/pkg-message > ${PKGMESSAGE}
 X	@ ${CAT} ${PKGMESSAGE}
 X.endif
 X
 X.include <bsd.port.mk>
 END-of-finchtv/Makefile
 echo x - finchtv/pkg-descr
 sed 's/^X//' >finchtv/pkg-descr << 'END-of-finchtv/pkg-descr'
 XFinchTV is the popular way to view sequence traces on Linux, Mac OSX,
 Xand Windows. FinchTV is the only trace viewer that can display an entire
 Xtrace in a scalable multi-pane view.
 X
 XFinchTV reads chromatogram files from the most popular formats. In
 Xaddition to displaying a multi-color sequence above the trace, FinchTV
 Xdisplays quality values (when available). You can adjust the scale in
 Xboth vertical and horizontal directions in either single or multipane
 Xviews.
 X
 XFinchTV can:
 Xo print traces (on a single page or control the number of panels printed)
 Xo export sequences in FASTA format
 Xo open gzipped files
 Xo open files with drag and drop
 Xo shows additional details about the file (sample ID, run start and stop
 X  times, spacing, mobility, lane number, etc.)
 X
 XWWW: http://www.geospiza.com/finchtv/index.htm
 END-of-finchtv/pkg-descr
 echo x - finchtv/pkg-plist
 sed 's/^X//' >finchtv/pkg-plist << 'END-of-finchtv/pkg-plist'
 Xbin/finchtv
 X%%PORTDOCS%%%%DOCSDIR%%/License.txt
 X%%PORTDOCS%%%%DOCSDIR%%/ReleaseNotes.txt
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/ToolBars-Toolbar.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/DataViews-Multi.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/DataViews-sMenu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/DataViews-Std.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/DataViews-ToolBar.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/DataViews-wMenu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/ResizingTheWindow.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/ScalingTraceData.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/Toolbars-Menu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/ContextualMenu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Toolsbars2.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/BaseCalls2.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/basePosNumbers.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/basePosNumbers2.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/contextualMenus.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Edit1.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/fileOpen1.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/fileOpen2.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/GoToBase.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Info1.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Info2.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/InfoDetails.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/InfoGen.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/InfoSeq.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Print.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Print2.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/PrintOptions.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/PrintOptions2.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/QuickStart.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Qvals1.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Qvals2.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/rangeSelection.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/save1.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/save2.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/save3.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Searches.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/SelectBases.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/StatusBar.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped1.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped2.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped3.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped4.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped5.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped6.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped7.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped8.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/toolbars1.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/BaseCalls1.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/SelectingBases.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/BLAST-menu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Basecalls-Menu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-BaseCalls.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Info-Menu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Info.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Q20.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Qualities-Menu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Qualities.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Raw.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-RawView.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-RC-menu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-RC.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/EditingData.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/ExportingData.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Info-Details.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Info-General.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Info-Seq.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Navigating-Compressed.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Navigating-Goto.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Navigating-Menu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Navigating-Numbers.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Navigating.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/OpeningChromats-Menu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/OpeningChromats.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/PrintingTraces-Menu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/PrintingTraces-Options-Menupng.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/PrintingTraces-OptionsDialog.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/PrintingTraces.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Save-Menu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Save.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Search-Findbox.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Search.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/SelectingBases-Status.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/BLAST-contextual.png
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 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Geospiza-32mmHlogo.psd
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 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Geospiza-smlogo.png
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 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/MenuLine.gif
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Title.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/VerNum.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/finch-bulllet.png
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 X%%PORTDOCS%%@dirrm %%DOCSDIR%%
 X@dirrm %%EXAMPLESDIR%%/finchtv
 X@dirrm %%EXAMPLESDIR%%
 END-of-finchtv/pkg-plist
 echo x - finchtv/distinfo
 sed 's/^X//' >finchtv/distinfo << 'END-of-finchtv/distinfo'
 XMD5 (finchtv_1_3_0.tar.gz) = c02ebd1274fda3c7974b8ee53d387239
 XSIZE (finchtv_1_3_0.tar.gz) = 6694746
 END-of-finchtv/distinfo
 echo x - finchtv/pkg-message
 sed 's/^X//' >finchtv/pkg-message << 'END-of-finchtv/pkg-message'
 X
 X----------------------------------------------------------------------------
 X
 X  As reported in the ReleaseNotes.txt file, the 'Online Help' menu may not 
 X  work. If you need to access the FinchTV help pages/documentation see
 X  below.
 X
 X  FinchTV Help pages are installed under
 X  %%DOCSDIR%%
 X  and can be accessed using the following URL:
 X  file://%%DOCSDIR%%/Help/index.htm
 X
 X  They are also available online at http://geospiza.com/finchtv/help
 X
 X----------------------------------------------------------------------------
 END-of-finchtv/pkg-message
 exit
 
 
 --9jxsPFA5p3P2qPhR--

From: Thierry Thomas <thierry@FreeBSD.org>
To: Fernan Aguero <fernan@iib.unsam.edu.ar>
Cc: freebsd-gnats-submit@FreeBSD.org
Subject: Re: ports/70271: [new port] biology/finchtv a DNA sequence trace viewer
Date: Thu, 10 Mar 2005 21:34:51 +0100

 --bg08WKrSYDhXBjb5
 Content-Type: text/plain; charset=iso-8859-1
 Content-Disposition: inline
 Content-Transfer-Encoding: quoted-printable
 
 Le Jeu 10 mar 05 =E0 16:04:43 +0100, Fernan Aguero <fernan@iib.unsam.edu.ar>
  =E9crivait=A0:
 > Thierry, the program is distributed as a static binary, all
 > libraries are included. What happened with version 1.2.0 is
 > that the authors forgot to include some library, which produced the
 > error message that you mention above (GLIBCPP_3.2.2 not
 > found). This was not the case for 1.1.0 (the one originally
 > submitted in this PR, and is not the case for 1.3.0, the
 > version I am submitting now in this followup.)
 
 OK. Thanks for the follow-up.
 
 > The program is working for me using linux_base-8-8.0_4.
 > Please test and let me know if something else needs to be
 > fixed.=20
 
 Unfortunately, it does not run on my machines (tested on FreeBSD-5.3 and
 FreeBSD-4.11), both of them running linux_base-8-8.0_6: it eats CPU
 cycles, and nothing appears.
 
 Here is the output of a truss session:
 
 $ truss finchtv
 settimeofday(0xbfbff8b0,0x1)			 ERR#1 'Operation not permitted'
 open("=83=C4=10=83=F8=FF=89=C3=0F=84U=01",0x8696920,00)		 ERR#2 'No such fi=
 le or directory'
 read(0x84b33a1,0x2,0xbfbffa40)			 ERR#9 'Bad file descriptor'
 close(2)					 =3D 0 (0x0)
 write(9,0x0,-1077937512)			 ERR#9 'Bad file descriptor'
 write(9,0x0,-1077937512)			 ERR#9 'Bad file descriptor'
 write(9,0x0,-1077937512)			 ERR#9 'Bad file descriptor'
 write(9,0x0,-1077937512)			 ERR#9 'Bad file descriptor'
 write(9,0x0,-1077937512)			 ERR#9 'Bad file descriptor'
 =2E..
 
 and then there is an infinite loop with these 'write'.
 
 Since I was here, I have made some minor modifications (pkg-message and
 pkg-plist), please see the attached shar file.
 
 Regards,
 --=20
 Th. Thomas.
 
 --bg08WKrSYDhXBjb5
 Content-Type: application/x-shar
 Content-Disposition: attachment; filename="finchtv.shar"
 Content-Transfer-Encoding: quoted-printable
 
 # This is a shell archive.  Save it in a file, remove anything before=0A# t=
 his line, and then unpack it by entering "sh file".  Note, it may=0A# creat=
 e directories; files and directories will be owned by you and=0A# have defa=
 ult permissions.=0A#=0A# This archive contains:=0A#=0A#	biology/finchtv=0A#=
 	biology/finchtv/Makefile=0A#	biology/finchtv/pkg-descr=0A#	biology/finchtv=
 /pkg-plist=0A#	biology/finchtv/distinfo=0A#	biology/finchtv/files=0A#	biolo=
 gy/finchtv/files/pkg-message.in=0A#=0Aecho c - biology/finchtv=0Amkdir -p b=
 iology/finchtv > /dev/null 2>&1=0Aecho x - biology/finchtv/Makefile=0Ased '=
 s/^X//' >biology/finchtv/Makefile << 'END-of-biology/finchtv/Makefile'=0AX#=
  ex:ts=3D8=0AX# New ports collection makefile for:	FinchTV=0AX# Date create=
 d:		10 Aug 2004=0AX# Whom:	      		Fernan Aguero <fernan@iib.unsam.edu.ar>=
 =0AX#=0AX# $FreeBSD$=0AX#=0AX=0AXPORTNAME=3D	finchtv=0AXPORTVERSION=3D	1.3.=
 0=0AXCATEGORIES=3D	biology=0AXMASTER_SITES=3D	http://www.geospiza.com/finch=
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 ${CP} -R ${WRKSRC}/Help ${DOCSDIR}=0AX.endif=0AX	@${MKDIR} ${EXAMPLESDIR}=
 =0AX	${CP} -R ${WRKSRC}/SampleData/ ${EXAMPLESDIR}=0AX	${BRANDELF} -t Linux=
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 =0Ased 's/^X//' >biology/finchtv/pkg-descr << 'END-of-biology/finchtv/pkg-d=
 escr'=0AXFinchTV is the popular way to view sequence traces on Linux, Mac O=
 SX,=0AXand Windows. FinchTV is the only trace viewer that can display an en=
 tire=0AXtrace in a scalable multi-pane view.=0AX=0AXFinchTV reads chromatog=
 ram files from the most popular formats. In=0AXaddition to displaying a mul=
 ti-color sequence above the trace, FinchTV=0AXdisplays quality values (when=
  available). You can adjust the scale in=0AXboth vertical and horizontal di=
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 rint traces (on a single page or control the number of panels printed)=0AXo=
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 ss the FinchTV help pages/documentation see=0AX  below.=0AX=0AX  FinchTV He=
 lp pages are installed under=0AX  %%DOCSDIR%%=0AX  and can be accessed usin=
 g the following URL:=0AX  file://%%DOCSDIR%%/Help/index.htm=0AX=0AX  They a=
 re also available online at http://geospiza.com/finchtv/help=0AX=0AX-------=
 ---------------------------------------------------------------------=0AEND=
 -of-biology/finchtv/files/pkg-message.in=0Aexit=0A=0A
 --bg08WKrSYDhXBjb5--

From: Fernan Aguero <fernan@iib.unsam.edu.ar>
To: Thierry Thomas <thierry@FreeBSD.org>
Cc: freebsd-gnats-submit@FreeBSD.org
Subject: Re: ports/70271: [new port] biology/finchtv a DNA sequence trace viewer
Date: Thu, 10 Mar 2005 19:58:13 -0300

 --r5Pyd7+fXNt84Ff3
 Content-Type: text/plain; charset=us-ascii
 Content-Disposition: inline
 
 +----[ Thierry Thomas <thierry@FreeBSD.org> (10.Mar.2005 17:39):
 |
 | > The program is working for me using linux_base-8-8.0_4.
 | > Please test and let me know if something else needs to be
 | > fixed. 
 | 
 | Unfortunately, it does not run on my machines (tested on FreeBSD-5.3 and
 | FreeBSD-4.11), both of them running linux_base-8-8.0_6: it eats CPU
 | cycles, and nothing appears.
 
 [ truss output snipped ]
 
 OK, yes I see the same behaviour with the binary that gets
 installed by the port (I should have tested this one before
 submitting). However, the binary that is in the
 distfile works fine after brandelf. Maybe the problem is
 with the stripping? This is the only difference I see
 between the two files. 
 
 I have corrected the port to install the binary without
 stripping and the installed executable works fine for me.
 
 Please test, but I think that it is ready to be committed
 this time!
 
 | Since I was here, I have made some minor modifications (pkg-message and
 | pkg-plist), please see the attached shar file.
 
 OK, thanks.
 
 | 
 | Regards,
 | -- 
 | Th. Thomas.
 |
 +----]
 
 --r5Pyd7+fXNt84Ff3
 Content-Type: text/plain; charset=us-ascii
 Content-Disposition: attachment; filename="finchtv.shar"
 
 # This is a shell archive.  Save it in a file, remove anything before
 # this line, and then unpack it by entering "sh file".  Note, it may
 # create directories; files and directories will be owned by you and
 # have default permissions.
 #
 # This archive contains:
 #
 #	finchtv
 #	finchtv/Makefile
 #	finchtv/pkg-descr
 #	finchtv/pkg-plist
 #	finchtv/distinfo
 #	finchtv/files
 #	finchtv/files/pkg-message.in
 #
 echo c - finchtv
 mkdir -p finchtv > /dev/null 2>&1
 echo x - finchtv/Makefile
 sed 's/^X//' >finchtv/Makefile << 'END-of-finchtv/Makefile'
 X# ex:ts=8
 X# New ports collection makefile for:	FinchTV
 X# Date created:		10 Aug 2004
 X# Whom:	      		Fernan Aguero <fernan@iib.unsam.edu.ar>
 X#
 X# $FreeBSD$
 X#
 X
 XPORTNAME=	finchtv
 XPORTVERSION=	1.3.0
 XCATEGORIES=	biology
 XMASTER_SITES=	http://www.geospiza.com/finchtv/download/programs/linux/
 XDISTNAME=	${PORTNAME}_${PORTVERSION:S/./_/g}
 X
 XMAINTAINER=	fernan@iib.unsam.edu.ar
 XCOMMENT=	A chromatogram trace viewer
 X
 XUSE_LINUX?=	yes
 XONLY_FOR_ARCHS=	i386
 XNO_BUILD=	yes
 XSUB_FILES=	pkg-message
 XSTRIP=
 X
 Xdo-install:
 X.if !defined(NOPORTDOCS)
 X	@${MKDIR} ${DOCSDIR}
 X	${INSTALL_DATA} ${WRKSRC}/License.txt ${DOCSDIR}
 X	${INSTALL_DATA} ${WRKSRC}/ReleaseNotes.txt ${DOCSDIR}
 X	${CP} -R ${WRKSRC}/Help ${DOCSDIR}
 X.endif
 X	@${MKDIR} ${EXAMPLESDIR}
 X	${CP} -R ${WRKSRC}/SampleData/ ${EXAMPLESDIR}
 X	${BRANDELF} -t Linux ${WRKSRC}/finchtv
 X	${INSTALL_PROGRAM} ${WRKSRC}/finchtv ${PREFIX}/bin
 X
 Xpost-install:
 X	@ ${CAT} ${PKGMESSAGE}
 X
 X.include <bsd.port.mk>
 END-of-finchtv/Makefile
 echo x - finchtv/pkg-descr
 sed 's/^X//' >finchtv/pkg-descr << 'END-of-finchtv/pkg-descr'
 XFinchTV is the popular way to view sequence traces on Linux, Mac OSX,
 Xand Windows. FinchTV is the only trace viewer that can display an entire
 Xtrace in a scalable multi-pane view.
 X
 XFinchTV reads chromatogram files from the most popular formats. In
 Xaddition to displaying a multi-color sequence above the trace, FinchTV
 Xdisplays quality values (when available). You can adjust the scale in
 Xboth vertical and horizontal directions in either single or multipane
 Xviews.
 X
 XFinchTV can:
 Xo print traces (on a single page or control the number of panels printed)
 Xo export sequences in FASTA format
 Xo open gzipped files
 Xo open files with drag and drop
 Xo shows additional details about the file (sample ID, run start and stop
 X  times, spacing, mobility, lane number, etc.)
 X
 XWWW: http://www.geospiza.com/finchtv/index.htm
 END-of-finchtv/pkg-descr
 echo x - finchtv/pkg-plist
 sed 's/^X//' >finchtv/pkg-plist << 'END-of-finchtv/pkg-plist'
 Xbin/finchtv
 X%%PORTDOCS%%%%DOCSDIR%%/License.txt
 X%%PORTDOCS%%%%DOCSDIR%%/ReleaseNotes.txt
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/ToolBars-Toolbar.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/DataViews-Multi.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/DataViews-sMenu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/DataViews-Std.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/DataViews-ToolBar.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/DataViews-wMenu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/ResizingTheWindow.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/ScalingTraceData.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/Toolbars-Menu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/B-FinchTV_Interface/ContextualMenu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Toolsbars2.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/BaseCalls2.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/basePosNumbers.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/basePosNumbers2.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/contextualMenus.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Edit1.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/fileOpen1.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/fileOpen2.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/GoToBase.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Info1.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Info2.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/InfoDetails.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/InfoGen.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/InfoSeq.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Print.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Print2.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/PrintOptions.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/PrintOptions2.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/QuickStart.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Qvals1.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Qvals2.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/rangeSelection.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/save1.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/save2.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/save3.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/Searches.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/SelectBases.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/StatusBar.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped1.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped2.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped3.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped4.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped5.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped6.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped7.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/stdWrapped8.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/toolbars1.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Screens/BaseCalls1.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/SelectingBases.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/BLAST-menu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Basecalls-Menu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-BaseCalls.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Info-Menu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Info.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Q20.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Qualities-Menu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Qualities.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-Raw.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-RawView.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-RC-menu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/DisplayingData-RC.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/EditingData.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/ExportingData.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Info-Details.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Info-General.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Info-Seq.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Navigating-Compressed.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Navigating-Goto.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Navigating-Menu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Navigating-Numbers.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Navigating.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/OpeningChromats-Menu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/OpeningChromats.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/PrintingTraces-Menu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/PrintingTraces-Options-Menupng.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/PrintingTraces-OptionsDialog.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/PrintingTraces.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Save-Menu.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Save.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Search-Findbox.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/Search.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/SelectingBases-Status.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/C-WorkingWithYourData/BLAST-contextual.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/A-Introduction/about.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Geospiza-32mmHlogo.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Geospiza-32mmHlogo.psd
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Geospiza-lglogo.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Geospiza-smlogo.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/HelpTitle.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/MenuLine.gif
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/Title.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/VerNum.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/finch-bulllet.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/FinchTV-cover.jpg
 X%%PORTDOCS%%%%DOCSDIR%%/Help/media/FinchTV_Mac_App.png
 X%%PORTDOCS%%%%DOCSDIR%%/Help/pages/A-Introduction/01-About.html
 X%%PORTDOCS%%%%DOCSDIR%%/Help/pages/A-Introduction/02-Features.html
 X%%PORTDOCS%%%%DOCSDIR%%/Help/pages/A-Introduction/03-QuickStart.html
 X%%PORTDOCS%%%%DOCSDIR%%/Help/pages/B-FinchTV_Interface/01-DataViews.html
 X%%PORTDOCS%%%%DOCSDIR%%/Help/pages/B-FinchTV_Interface/02-ScalingTraces.html
 X%%PORTDOCS%%%%DOCSDIR%%/Help/pages/B-FinchTV_Interface/03-ResizingTheWindow.html
 X%%PORTDOCS%%%%DOCSDIR%%/Help/pages/B-FinchTV_Interface/04-ToolBars.html
 X%%PORTDOCS%%%%DOCSDIR%%/Help/pages/B-FinchTV_Interface/05-ContextualMenus.html
 X%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/10-SavingData.html
 X%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/02-DisplayingData.html
 X%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/03-PrintingATrace.html
 X%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/04-ExportingData.html
 X%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/05-NavigatingInTraces.html
 X%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/06-SelectingData.html
 X%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/07-SearchingForSequences.html
 X%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/08-BLASTSearches.html
 X%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/09-EditingData.html
 X%%PORTDOCS%%%%DOCSDIR%%/Help/pages/C-WorkingWithYourData/01-OpenFiles.html
 X%%PORTDOCS%%%%DOCSDIR%%/Help/index.htm
 X%%PORTDOCS%%%%DOCSDIR%%/Help/style.css
 X%%EXAMPLESDIR%%/78I21_1101.y1.ab1
 X%%EXAMPLESDIR%%/G33P641RB11.scf.gz
 X%%EXAMPLESDIR%%/G33P771FF3.scf
 X%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/media/B-FinchTV_Interface
 X%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/media/Screens
 X%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/media/C-WorkingWithYourData
 X%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/media/A-Introduction
 X%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/media
 X%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/pages/A-Introduction
 X%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/pages/B-FinchTV_Interface
 X%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/pages/C-WorkingWithYourData
 X%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help/pages
 X%%PORTDOCS%%@dirrm %%DOCSDIR%%/Help
 X%%PORTDOCS%%@dirrm %%DOCSDIR%%
 X@dirrm %%EXAMPLESDIR%%
 END-of-finchtv/pkg-plist
 echo x - finchtv/distinfo
 sed 's/^X//' >finchtv/distinfo << 'END-of-finchtv/distinfo'
 XMD5 (finchtv_1_3_0.tar.gz) = c02ebd1274fda3c7974b8ee53d387239
 XSIZE (finchtv_1_3_0.tar.gz) = 6694746
 END-of-finchtv/distinfo
 echo c - finchtv/files
 mkdir -p finchtv/files > /dev/null 2>&1
 echo x - finchtv/files/pkg-message.in
 sed 's/^X//' >finchtv/files/pkg-message.in << 'END-of-finchtv/files/pkg-message.in'
 X
 X----------------------------------------------------------------------------
 X
 X  As reported in the ReleaseNotes.txt file, the 'Online Help' menu may not 
 X  work. If you need to access the FinchTV help pages/documentation see
 X  below.
 X
 X  FinchTV Help pages are installed under
 X  %%DOCSDIR%%
 X  and can be accessed using the following URL:
 X  file://%%DOCSDIR%%/Help/index.htm
 X
 X  They are also available online at http://geospiza.com/finchtv/help
 X
 X----------------------------------------------------------------------------
 END-of-finchtv/files/pkg-message.in
 exit
 
 
 --r5Pyd7+fXNt84Ff3--
State-Changed-From-To: feedback->closed 
State-Changed-By: thierry 
State-Changed-When: Fri Mar 11 21:16:39 GMT 2005 
State-Changed-Why:  

New port added, thanks! 


http://www.freebsd.org/cgi/query-pr.cgi?pr=70271 
>Unformatted:
