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Date: Mon, 11 Mar 2002 11:35:09 +1100 (EST)
From: Camson Huynh <chuynh@biolateral.com.au>
Reply-To: Camson Huynh <chuynh@biolateral.com.au>
To: FreeBSD-gnats-submit@freebsd.org
Cc:
Subject: New Port: biology/act
X-Send-Pr-Version: 3.113
X-GNATS-Notify:

>Number:         35753
>Category:       ports
>Synopsis:       New Port: biology/act
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          closed
>Quarter:        
>Keywords:       
>Date-Required:  
>Class:          change-request
>Submitter-Id:   current-users
>Arrival-Date:   Sun Mar 10 16:30:01 PST 2002
>Closed-Date:    Thu Jan 16 06:23:17 PST 2003
>Last-Modified:  Thu Jan 16 06:23:17 PST 2003
>Originator:     Camson Huynh
>Release:        FreeBSD 4.5-STABLE i386
>Organization:
Biolateral Pty Ltd
>Environment:
System: FreeBSD oasis.bio 4.5-STABLE FreeBSD 4.5-STABLE #0: Mon Mar 4 12:18:52 EST 2002 root@oasis.bio:/usr/obj/usr/src/sys/OASIS i386


	
>Description:
ACT (Artemis Comparison Tool) is a DNA sequence comparison viewer based on
Artemis. In common with Artemis, ACT is written in Java and runs on UNIX,
GNU/Linux, Macintosh and MS Windows systems. It can read complete EMBL
and GENBANK entries or sequence in FASTA or raw format. Extra sequence
features can be in EMBL, GENBANK or GFF format. ACT is distributed under the
same license as Artemis. 

The sequence comparison displayed by ACT is usually the result of a blastn or
tblastx search that has been processed by MSPcrunch. MSPcrunch must be run
with the -d flag for the output to be usable by ACT. 

WWW:  http://www.sanger.ac.uk/Software/Act/manual

>How-To-Repeat:
	
>Fix:

# This is a shell archive.  Save it in a file, remove anything before
# this line, and then unpack it by entering "sh file".  Note, it may
# create directories; files and directories will be owned by you and
# have default permissions.
#
# This archive contains:
#
#	act
#	act/pkg-descr
#	act/pkg-comment
#	act/distinfo
#	act/Makefile
#	act/pkg-plist
#
echo c - act
mkdir -p act > /dev/null 2>&1
echo x - act/pkg-descr
sed 's/^X//' >act/pkg-descr << 'END-of-act/pkg-descr'
XACT (Artemis Comparison Tool) is a DNA sequence comparison viewer based on
XArtemis. In common with Artemis, ACT is written in Java and runs on UNIX,
XGNU/Linux, Macintosh and MS Windows systems. It can read complete EMBL
Xand GENBANK entries or sequence in FASTA or raw format. Extra sequence
Xfeatures can be in EMBL, GENBANK or GFF format. ACT is distributed under the
Xsame license as Artemis. 
X
XThe sequence comparison displayed by ACT is usually the result of a blastn or
Xtblastx search that has been processed by MSPcrunch. MSPcrunch must be run
Xwith the -d flag for the output to be usable by ACT. 
X
XWWW:  http://www.sanger.ac.uk/Software/Act/manual
END-of-act/pkg-descr
echo x - act/pkg-comment
sed 's/^X//' >act/pkg-comment << 'END-of-act/pkg-comment'
XA DNA sequence comparison viewer based on Artemis
END-of-act/pkg-comment
echo x - act/distinfo
sed 's/^X//' >act/distinfo << 'END-of-act/distinfo'
XMD5 (act_compiled_v1.tar.gz) = 30e263c6507007d866a24b59c0767d77
END-of-act/distinfo
echo x - act/Makefile
sed 's/^X//' >act/Makefile << 'END-of-act/Makefile'
X# New ports collection makefile for:	artemis
X# Date created:				11 Mar 2002
X# Whom:					chuynh@bilateral.com.au
X#
X# $FreeBSD$
X#
X
XPORTNAME=	act
XPORTVERSION=	1.0
XCATEGORIES=	biology
XMASTER_SITES=	http://www.sanger.ac.uk/Software/Act/v1/
XDISTNAME=	act_compiled_v1
X
XMAINTAINER=	chuynh@biolateral.com.au
X
XRUN_DEPENDS=	${JAVA_COMMAND}:${PORTSDIR}/java/jdk13
X
XWRKSRC=		${WRKDIR}/${PORTNAME}
X
XJDK_VERSION=	1.3.1
XJDK_DIR=	${PREFIX}/jdk${JDK_VERSION}
XJAVA_COMMAND=	${JDK_DIR}/bin/java
X
XNO_BUILD=	yes
X
Xdo-install:
X	@${MKDIR} ${PREFIX}/${PORTNAME}-${PORTVERSION}
X	@${TAR} -C ${WRKSRC} -cf- . | ${TAR} -C ${PREFIX}/${PORTNAME}-${PORTVERSION} -xpf-
X	@${LN} -s ${PREFIX}/${PORTNAME}-${PORTVERSION}/act ${PREFIX}/bin/act
X
XPLIST_SUB=	PORTVERSION="${PORTVERSION}"
X
X.include <bsd.port.mk>
END-of-act/Makefile
echo x - act/pkg-plist
sed 's/^X//' >act/pkg-plist << 'END-of-act/pkg-plist'
Xact-1.0/CVS/Root
Xact-1.0/CVS/Repository
Xact-1.0/CVS/Entries
Xact-1.0/.cvsignore
Xact-1.0/AppGlobal.java
Xact-1.0/Dad.java
Xact-1.0/Makefile
Xact-1.0/act
Xact-1.0/META-INF/CVS/Root
Xact-1.0/META-INF/CVS/Repository
Xact-1.0/META-INF/CVS/Entries
Xact-1.0/META-INF/MANIFEST.MF
Xact-1.0/uk/CVS/Root
Xact-1.0/uk/CVS/Repository
Xact-1.0/uk/CVS/Entries
Xact-1.0/uk/ac/CVS/Root
Xact-1.0/uk/ac/CVS/Repository
Xact-1.0/uk/ac/CVS/Entries
Xact-1.0/uk/ac/sanger/CVS/Root
Xact-1.0/uk/ac/sanger/CVS/Repository
Xact-1.0/uk/ac/sanger/CVS/Entries
Xact-1.0/uk/ac/sanger/pathogens/CVS/Root
Xact-1.0/uk/ac/sanger/pathogens/CVS/Repository
Xact-1.0/uk/ac/sanger/pathogens/CVS/Entries
Xact-1.0/uk/ac/sanger/pathogens/Document.java
Xact-1.0/uk/ac/sanger/pathogens/FastVector.java
Xact-1.0/uk/ac/sanger/pathogens/FileDocument.java
Xact-1.0/uk/ac/sanger/pathogens/FileProgressDocument.java
Xact-1.0/uk/ac/sanger/pathogens/InputStreamProgressEvent.java
Xact-1.0/uk/ac/sanger/pathogens/InputStreamProgressListener.java
Xact-1.0/uk/ac/sanger/pathogens/OutOfRangeException.java
Xact-1.0/uk/ac/sanger/pathogens/ProgressInputStream.java
Xact-1.0/uk/ac/sanger/pathogens/ReadOnlyException.java
Xact-1.0/uk/ac/sanger/pathogens/StringVector.java
Xact-1.0/uk/ac/sanger/pathogens/URLDocument.java
Xact-1.0/uk/ac/sanger/pathogens/embl/CVS/Root
Xact-1.0/uk/ac/sanger/pathogens/embl/CVS/Repository
Xact-1.0/uk/ac/sanger/pathogens/embl/CVS/Entries
Xact-1.0/uk/ac/sanger/pathogens/embl/BetweenRange.java
Xact-1.0/uk/ac/sanger/pathogens/embl/ComparableFeature.java
Xact-1.0/uk/ac/sanger/pathogens/embl/CorbaEntry.java
Xact-1.0/uk/ac/sanger/pathogens/embl/CorbaFeature.java
Xact-1.0/uk/ac/sanger/pathogens/embl/CorbaSequence.java
Xact-1.0/uk/ac/sanger/pathogens/embl/DateStampFeature.java
Xact-1.0/uk/ac/sanger/pathogens/embl/DocumentEntry.java
Xact-1.0/uk/ac/sanger/pathogens/embl/DocumentEntryAutosaveThread.java
Xact-1.0/uk/ac/sanger/pathogens/embl/DocumentEntryFactory.java
Xact-1.0/uk/ac/sanger/pathogens/embl/DocumentFeature.java
Xact-1.0/uk/ac/sanger/pathogens/embl/EMBLObject.java
Xact-1.0/uk/ac/sanger/pathogens/embl/Entry.java
Xact-1.0/uk/ac/sanger/pathogens/embl/EmblDocumentEntry.java
Xact-1.0/uk/ac/sanger/pathogens/embl/EmblMisc.java
Xact-1.0/uk/ac/sanger/pathogens/embl/EmblStreamFeature.java
Xact-1.0/uk/ac/sanger/pathogens/embl/EmblStreamSequence.java
Xact-1.0/uk/ac/sanger/pathogens/embl/EnsemblCorbaEntry.java
Xact-1.0/uk/ac/sanger/pathogens/embl/EnsemblCorbaFeature.java
Xact-1.0/uk/ac/sanger/pathogens/embl/EnsemblCorbaSequence.java
Xact-1.0/uk/ac/sanger/pathogens/embl/EntryInformation.java
Xact-1.0/uk/ac/sanger/pathogens/embl/EntryInformationException.java
Xact-1.0/uk/ac/sanger/pathogens/embl/FastaStreamSequence.java
Xact-1.0/uk/ac/sanger/pathogens/embl/Feature.java
Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureComparator.java
Xact-1.0/uk/ac/sanger/pathogens/embl/Key.java
Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureEnumeration.java
Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureHeader.java
Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureTable.java
Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureTree.java
Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureVector.java
Xact-1.0/uk/ac/sanger/pathogens/embl/FuzzyRange.java
Xact-1.0/uk/ac/sanger/pathogens/embl/GFFDocumentEntry.java
Xact-1.0/uk/ac/sanger/pathogens/embl/GFFMisc.java
Xact-1.0/uk/ac/sanger/pathogens/embl/GFFEntryInformation.java
Xact-1.0/uk/ac/sanger/pathogens/embl/GFFStreamFeature.java
Xact-1.0/uk/ac/sanger/pathogens/embl/GenbankDocumentEntry.java
Xact-1.0/uk/ac/sanger/pathogens/embl/GenbankMisc.java
Xact-1.0/uk/ac/sanger/pathogens/embl/GenbankStreamFeature.java
Xact-1.0/uk/ac/sanger/pathogens/embl/GenbankStreamSequence.java
Xact-1.0/uk/ac/sanger/pathogens/embl/InvalidKeyException.java
Xact-1.0/uk/ac/sanger/pathogens/embl/InvalidQualifierException.java
Xact-1.0/uk/ac/sanger/pathogens/embl/InvalidRelationException.java
Xact-1.0/uk/ac/sanger/pathogens/embl/KeyVector.java
Xact-1.0/uk/ac/sanger/pathogens/embl/LineGroup.java
Xact-1.0/uk/ac/sanger/pathogens/embl/LineGroupVector.java
Xact-1.0/uk/ac/sanger/pathogens/embl/LinePushBackReader.java
Xact-1.0/uk/ac/sanger/pathogens/embl/Location.java
Xact-1.0/uk/ac/sanger/pathogens/embl/LocationLexer.java
Xact-1.0/uk/ac/sanger/pathogens/embl/Qualifier.java
Xact-1.0/uk/ac/sanger/pathogens/embl/LocationParseException.java
Xact-1.0/uk/ac/sanger/pathogens/embl/LocationParseNode.java
Xact-1.0/uk/ac/sanger/pathogens/embl/LocationParseNodeVector.java
Xact-1.0/uk/ac/sanger/pathogens/embl/LowerInteger.java
Xact-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchDocumentEntry.java
Xact-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchEntryInformation.java
Xact-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchStreamFeature.java
Xact-1.0/uk/ac/sanger/pathogens/embl/MiscLineGroup.java
Xact-1.0/uk/ac/sanger/pathogens/embl/OutOfDateException.java
Xact-1.0/uk/ac/sanger/pathogens/embl/PublicDBDocumentEntry.java
Xact-1.0/uk/ac/sanger/pathogens/embl/PublicDBStreamFeature.java
Xact-1.0/uk/ac/sanger/pathogens/embl/PushBackException.java
Xact-1.0/uk/ac/sanger/pathogens/embl/QualifierInfo.java
Xact-1.0/uk/ac/sanger/pathogens/embl/QualifierInfoException.java
Xact-1.0/uk/ac/sanger/pathogens/embl/QualifierInfoVector.java
Xact-1.0/uk/ac/sanger/pathogens/embl/QualifierParseException.java
Xact-1.0/uk/ac/sanger/pathogens/embl/QualifierVector.java
Xact-1.0/uk/ac/sanger/pathogens/embl/RWCorbaEntry.java
Xact-1.0/uk/ac/sanger/pathogens/embl/RWCorbaFeature.java
Xact-1.0/uk/ac/sanger/pathogens/embl/Range.java
Xact-1.0/uk/ac/sanger/pathogens/embl/RangeVector.java
Xact-1.0/uk/ac/sanger/pathogens/embl/RawStreamSequence.java
Xact-1.0/uk/ac/sanger/pathogens/embl/ReadFormatException.java
Xact-1.0/uk/ac/sanger/pathogens/embl/ReadOnlyEntry.java
Xact-1.0/uk/ac/sanger/pathogens/embl/Sequence.java
Xact-1.0/uk/ac/sanger/pathogens/embl/SimpleDocumentEntry.java
Xact-1.0/uk/ac/sanger/pathogens/embl/SimpleDocumentFeature.java
Xact-1.0/uk/ac/sanger/pathogens/embl/SimpleEntryInformation.java
Xact-1.0/uk/ac/sanger/pathogens/embl/StreamFeature.java
Xact-1.0/uk/ac/sanger/pathogens/embl/StreamFeatureTable.java
Xact-1.0/uk/ac/sanger/pathogens/embl/StreamQualifier.java
Xact-1.0/uk/ac/sanger/pathogens/embl/StreamSequence.java
Xact-1.0/uk/ac/sanger/pathogens/embl/StreamSequenceFactory.java
Xact-1.0/uk/ac/sanger/pathogens/embl/UpperInteger.java
Xact-1.0/uk/ac/sanger/pathogens/embl/embl.example
Xact-1.0/uk/ac/sanger/pathogens/embl/QualifierInfoVector.class
Xact-1.0/uk/ac/sanger/pathogens/embl/QualifierInfoException.class
Xact-1.0/uk/ac/sanger/pathogens/embl/EntryInformation.class
Xact-1.0/uk/ac/sanger/pathogens/embl/EntryInformationException.class
Xact-1.0/uk/ac/sanger/pathogens/embl/ReadFormatException.class
Xact-1.0/uk/ac/sanger/pathogens/embl/InvalidRelationException.class
Xact-1.0/uk/ac/sanger/pathogens/embl/DocumentEntryFactory.class
Xact-1.0/uk/ac/sanger/pathogens/embl/SimpleEntryInformation.class
Xact-1.0/uk/ac/sanger/pathogens/embl/QualifierInfo.class
Xact-1.0/uk/ac/sanger/pathogens/embl/Key.class
Xact-1.0/uk/ac/sanger/pathogens/embl/KeyVector.class
Xact-1.0/uk/ac/sanger/pathogens/embl/Qualifier.class
Xact-1.0/uk/ac/sanger/pathogens/embl/DocumentEntry.class
Xact-1.0/uk/ac/sanger/pathogens/embl/Entry.class
Xact-1.0/uk/ac/sanger/pathogens/embl/EmblDocumentEntry.class
Xact-1.0/uk/ac/sanger/pathogens/embl/PublicDBDocumentEntry.class
Xact-1.0/uk/ac/sanger/pathogens/embl/SimpleDocumentEntry.class
Xact-1.0/uk/ac/sanger/pathogens/embl/SimpleDocumentEntry$1.class
Xact-1.0/uk/ac/sanger/pathogens/embl/LineGroup.class
Xact-1.0/uk/ac/sanger/pathogens/embl/EMBLObject.class
Xact-1.0/uk/ac/sanger/pathogens/embl/LinePushBackReader.class
Xact-1.0/uk/ac/sanger/pathogens/embl/PushBackException.class
Xact-1.0/uk/ac/sanger/pathogens/embl/StreamSequenceFactory.class
Xact-1.0/uk/ac/sanger/pathogens/embl/StreamSequence.class
Xact-1.0/uk/ac/sanger/pathogens/embl/Sequence.class
Xact-1.0/uk/ac/sanger/pathogens/embl/EmblStreamFeature.class
Xact-1.0/uk/ac/sanger/pathogens/embl/PublicDBStreamFeature.class
Xact-1.0/uk/ac/sanger/pathogens/embl/SimpleDocumentFeature.class
Xact-1.0/uk/ac/sanger/pathogens/embl/DocumentFeature.class
Xact-1.0/uk/ac/sanger/pathogens/embl/Feature.class
Xact-1.0/uk/ac/sanger/pathogens/embl/StreamFeature.class
Xact-1.0/uk/ac/sanger/pathogens/embl/ComparableFeature.class
Xact-1.0/uk/ac/sanger/pathogens/embl/QualifierParseException.class
Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureHeader.class
Xact-1.0/uk/ac/sanger/pathogens/embl/EmblMisc.class
Xact-1.0/uk/ac/sanger/pathogens/embl/MiscLineGroup.class
Xact-1.0/uk/ac/sanger/pathogens/embl/GenbankStreamFeature.class
Xact-1.0/uk/ac/sanger/pathogens/embl/GFFStreamFeature.class
Xact-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchStreamFeature.class
Xact-1.0/uk/ac/sanger/pathogens/embl/GenbankMisc.class
Xact-1.0/uk/ac/sanger/pathogens/embl/GFFMisc.class
Xact-1.0/uk/ac/sanger/pathogens/embl/GFFDocumentEntry.class
Xact-1.0/uk/ac/sanger/pathogens/embl/GenbankDocumentEntry.class
Xact-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchDocumentEntry.class
Xact-1.0/uk/ac/sanger/pathogens/embl/InvalidKeyException.class
Xact-1.0/uk/ac/sanger/pathogens/embl/InvalidQualifierException.class
Xact-1.0/uk/ac/sanger/pathogens/embl/Range.class
Xact-1.0/uk/ac/sanger/pathogens/embl/EmblStreamSequence.class
Xact-1.0/uk/ac/sanger/pathogens/embl/RangeVector.class
Xact-1.0/uk/ac/sanger/pathogens/embl/Location.class
Xact-1.0/uk/ac/sanger/pathogens/embl/LocationLexer.class
Xact-1.0/uk/ac/sanger/pathogens/embl/LocationLexer$TokenEnumeration.class
Xact-1.0/uk/ac/sanger/pathogens/embl/LocationParseException.class
Xact-1.0/uk/ac/sanger/pathogens/embl/QualifierVector.class
Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureEnumeration.class
Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureVector.class
Xact-1.0/uk/ac/sanger/pathogens/embl/GenbankStreamSequence.class
Xact-1.0/uk/ac/sanger/pathogens/embl/LineGroupVector.class
Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureTable.class
Xact-1.0/uk/ac/sanger/pathogens/embl/RawStreamSequence.class
Xact-1.0/uk/ac/sanger/pathogens/embl/FastaStreamSequence.class
Xact-1.0/uk/ac/sanger/pathogens/embl/StreamFeatureTable.class
Xact-1.0/uk/ac/sanger/pathogens/embl/DocumentEntryAutosaveThread.class
Xact-1.0/uk/ac/sanger/pathogens/embl/LocationParseNode.class
Xact-1.0/uk/ac/sanger/pathogens/embl/StreamQualifier.class
Xact-1.0/uk/ac/sanger/pathogens/embl/GFFEntryInformation.class
Xact-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchEntryInformation.class
Xact-1.0/uk/ac/sanger/pathogens/embl/LowerInteger.class
Xact-1.0/uk/ac/sanger/pathogens/embl/UpperInteger.class
Xact-1.0/uk/ac/sanger/pathogens/embl/FuzzyRange.class
Xact-1.0/uk/ac/sanger/pathogens/embl/OutOfDateException.class
Xact-1.0/uk/ac/sanger/pathogens/embl/DateStampFeature.class
Xact-1.0/uk/ac/sanger/pathogens/embl/LocationParseNodeVector.class
Xact-1.0/uk/ac/sanger/pathogens/embl/BetweenRange.class
Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureTree.class
Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureTree$FeatureEnumerator.class
Xact-1.0/uk/ac/sanger/pathogens/embl/FeatureComparator.class
Xact-1.0/uk/ac/sanger/pathogens/OutOfRangeException.class
Xact-1.0/uk/ac/sanger/pathogens/StringVector.class
Xact-1.0/uk/ac/sanger/pathogens/StringVector$1.class
Xact-1.0/uk/ac/sanger/pathogens/ReadOnlyException.class
Xact-1.0/uk/ac/sanger/pathogens/Document.class
Xact-1.0/uk/ac/sanger/pathogens/InputStreamProgressListener.class
Xact-1.0/uk/ac/sanger/pathogens/FileDocument.class
Xact-1.0/uk/ac/sanger/pathogens/InputStreamProgressEvent.class
Xact-1.0/uk/ac/sanger/pathogens/FileProgressDocument.class
Xact-1.0/uk/ac/sanger/pathogens/FastVector.class
Xact-1.0/uk/ac/sanger/pathogens/ProgressInputStream.class
Xact-1.0/diana/CVS/Root
Xact-1.0/diana/CVS/Repository
Xact-1.0/diana/CVS/Entries
Xact-1.0/diana/AlignMatch.java
Xact-1.0/diana/AlignMatchVector.java
Xact-1.0/diana/ChangeEvent.java
Xact-1.0/diana/ChangeListener.java
Xact-1.0/diana/ClipBoard.java
Xact-1.0/diana/ComparisonData.java
Xact-1.0/diana/ComparisonDataFactory.java
Xact-1.0/diana/ComparisonDataParseException.java
Xact-1.0/diana/Entry.java
Xact-1.0/diana/EntryChangeEvent.java
Xact-1.0/diana/EntryChangeListener.java
Xact-1.0/diana/EntryGroup.java
Xact-1.0/diana/EntryGroupChangeEvent.java
Xact-1.0/diana/EntryGroupChangeListener.java
Xact-1.0/diana/EntrySource.java
Xact-1.0/diana/plot/CVS/Root
Xact-1.0/diana/plot/CVS/Repository
Xact-1.0/diana/plot/CVS/Entries
Xact-1.0/diana/plot/AGWindowAlgorithm.java
Xact-1.0/diana/plot/ATDeviationAlgorithm.java
Xact-1.0/diana/plot/Algorithm.java
Xact-1.0/diana/plot/BaseAlgorithm.java
Xact-1.0/diana/plot/Codon12CorrelationAlgorithm.java
Xact-1.0/diana/plot/CodonUsageAlgorithm.java
Xact-1.0/diana/plot/CodonUsageFormatException.java
Xact-1.0/diana/plot/CodonUsageWeight.java
Xact-1.0/diana/plot/CodonWeight.java
Xact-1.0/diana/plot/CoilFeatureAlgorithm.java
Xact-1.0/diana/plot/HydroAlgorithm.java
Xact-1.0/diana/plot/FeatureAlgorithm.java
Xact-1.0/diana/plot/GCDeviationAlgorithm.java
Xact-1.0/diana/plot/GCFrameAlgorithm.java
Xact-1.0/diana/plot/GCSDWindowAlgorithm.java
Xact-1.0/diana/plot/GCWindowAlgorithm.java
Xact-1.0/diana/plot/HydrophilicityAlgorithm.java
Xact-1.0/diana/plot/HydrophobicityAlgorithm.java
Xact-1.0/diana/plot/UserDataAlgorithm.java
Xact-1.0/diana/plot/BaseAlgorithm.class
Xact-1.0/diana/plot/Algorithm.class
Xact-1.0/diana/plot/Codon12CorrelationAlgorithm.class
Xact-1.0/diana/plot/GCWindowAlgorithm.class
Xact-1.0/diana/plot/GCSDWindowAlgorithm.class
Xact-1.0/diana/plot/AGWindowAlgorithm.class
Xact-1.0/diana/plot/GCFrameAlgorithm.class
Xact-1.0/diana/plot/GCDeviationAlgorithm.class
Xact-1.0/diana/plot/ATDeviationAlgorithm.class
Xact-1.0/diana/plot/UserDataAlgorithm.class
Xact-1.0/diana/plot/CodonUsageAlgorithm.class
Xact-1.0/diana/plot/CodonUsageWeight.class
Xact-1.0/diana/plot/CodonWeight.class
Xact-1.0/diana/plot/FeatureAlgorithm.class
Xact-1.0/diana/plot/HydrophobicityAlgorithm.class
Xact-1.0/diana/plot/HydroAlgorithm.class
Xact-1.0/diana/plot/HydrophilicityAlgorithm.class
Xact-1.0/diana/plot/CoilFeatureAlgorithm.class
Xact-1.0/diana/plot/CodonUsageFormatException.class
Xact-1.0/diana/EntrySourceVector.java
Xact-1.0/diana/EntryVector.java
Xact-1.0/diana/ExternalApplication.java
Xact-1.0/diana/ExternalProgram.java
Xact-1.0/diana/ExternalProgramException.java
Xact-1.0/diana/ExternalProgramVector.java
Xact-1.0/diana/ExternalSearchProgram.java
Xact-1.0/diana/Feature.java
Xact-1.0/diana/FeatureChangeEvent.java
Xact-1.0/diana/FeatureChangeListener.java
Xact-1.0/diana/FeatureEnumeration.java
Xact-1.0/diana/FeatureFromVectorPredicate.java
Xact-1.0/diana/FeatureKeyPredicate.java
Xact-1.0/diana/FeatureKeyQualifierPredicate.java
Xact-1.0/diana/FeatureSegment.java
Xact-1.0/diana/FeaturePredicate.java
Xact-1.0/diana/FeatureSegmentVector.java
Xact-1.0/diana/FeatureVector.java
Xact-1.0/diana/FilteredEntryGroup.java
Xact-1.0/diana/GotoEvent.java
Xact-1.0/diana/GotoEventSource.java
Xact-1.0/diana/GotoListener.java
Xact-1.0/diana/LastSegmentException.java
Xact-1.0/diana/Logger.java
Xact-1.0/diana/MSPcrunchComparisonData.java
Xact-1.0/diana/MUMmerComparisonData.java
Xact-1.0/diana/Options.java
Xact-1.0/diana/Selectable.java
Xact-1.0/diana/Selection.java
Xact-1.0/diana/SelectionChangeEvent.java
Xact-1.0/diana/SelectionChangeListener.java
Xact-1.0/diana/helix.gif
Xact-1.0/diana/SimpleComparisonData.java
Xact-1.0/diana/SimpleEntryGroup.java
Xact-1.0/diana/SimpleGotoEventSource.java
Xact-1.0/diana/sanger-centre.gif
Xact-1.0/diana/components/CVS/Root
Xact-1.0/diana/components/CVS/Repository
Xact-1.0/diana/components/CVS/Entries
Xact-1.0/diana/components/ActMain.java
Xact-1.0/diana/components/AddMenu.java
Xact-1.0/diana/components/AlignmentViewer.java
Xact-1.0/diana/components/ArtemisMain.java
Xact-1.0/diana/components/BasePlot.java
Xact-1.0/diana/components/BasePlotGroup.java
Xact-1.0/diana/components/CanvasPanel.java
Xact-1.0/diana/components/Comparator.java
Xact-1.0/diana/components/ComparatorDialog.java
Xact-1.0/diana/components/CorbaEntrySource.java
Xact-1.0/diana/components/DisplayAdjustmentEvent.java
Xact-1.0/diana/components/DisplayAdjustmentListener.java
Xact-1.0/diana/components/DisplayComponent.java
Xact-1.0/diana/components/EMBLCorbaEntrySource.java
Xact-1.0/diana/components/EditMenu.java
Xact-1.0/diana/components/EnsemblEntrySource.java
Xact-1.0/diana/components/EntryActionListener.java
Xact-1.0/diana/components/EntryEdit.java
Xact-1.0/diana/components/EntryEditVector.java
Xact-1.0/diana/components/EntryFileDialog.java
Xact-1.0/diana/components/EntryGroupDisplay.java
Xact-1.0/diana/components/EntryGroupInfoDisplay.java
Xact-1.0/diana/components/EntryGroupMenu.java
Xact-1.0/diana/components/EntryGroupPanel.java
Xact-1.0/diana/components/EntryHeaderEdit.java
Xact-1.0/diana/components/ExternalProgramOptions.java
Xact-1.0/diana/components/FeatureAminoAcidViewer.java
Xact-1.0/diana/components/FeatureBaseViewer.java
Xact-1.0/diana/components/FeatureDisplay.java
Xact-1.0/diana/components/FeatureDisplayOwner.java
Xact-1.0/diana/components/FeatureEdit.java
Xact-1.0/diana/components/FeatureInfo.java
Xact-1.0/diana/components/FeatureList.java
Xact-1.0/diana/components/FeatureListFrame.java
Xact-1.0/diana/components/FeaturePlot.java
Xact-1.0/diana/components/FeaturePlotGroup.java
Xact-1.0/diana/components/FeaturePopup.java
Xact-1.0/diana/components/FeatureViewer.java
Xact-1.0/diana/components/FileDialogEntrySource.java
Xact-1.0/diana/components/FileViewer.java
Xact-1.0/diana/components/GotoMenu.java
Xact-1.0/diana/components/KeyChoice.java
Xact-1.0/diana/components/KeyChooser.java
Xact-1.0/diana/components/ListDialog.java
Xact-1.0/diana/components/LogViewer.java
Xact-1.0/diana/components/MarkerRangeRequester.java
Xact-1.0/diana/components/MarkerRangeRequesterEvent.java
Xact-1.0/diana/components/MarkerRangeRequesterListener.java
Xact-1.0/diana/components/MessageDialog.java
Xact-1.0/diana/components/MessageFrame.java
Xact-1.0/diana/components/Navigator.java
Xact-1.0/diana/components/Plot.java
Xact-1.0/diana/components/PlotMouseListener.java
Xact-1.0/diana/components/ProcessWatcher.java
Xact-1.0/diana/components/ProcessWatcherEvent.java
Xact-1.0/diana/components/ProcessWatcherListener.java
Xact-1.0/diana/components/QualifierChoice.java
Xact-1.0/diana/components/RawFeatureEdit.java
Xact-1.0/diana/components/RunMenu.java
Xact-1.0/diana/components/ScoreChangeEvent.java
Xact-1.0/diana/components/ScoreChangeListener.java
Xact-1.0/diana/components/ScoreChanger.java
Xact-1.0/diana/components/ScoreScrollbar.java
Xact-1.0/diana/components/SearchResultViewer.java
Xact-1.0/diana/components/SelectMenu.java
Xact-1.0/diana/components/SelectionInfoDisplay.java
Xact-1.0/diana/components/SelectionMenu.java
Xact-1.0/diana/components/SelectionViewer.java
Xact-1.0/diana/components/Selector.java
Xact-1.0/diana/components/SequenceViewer.java
Xact-1.0/diana/components/Splash.java
Xact-1.0/diana/components/TextDialog.java
Xact-1.0/diana/components/TextRequester.java
Xact-1.0/diana/components/TextRequesterEvent.java
Xact-1.0/diana/components/TextRequesterListener.java
Xact-1.0/diana/components/ViewMenu.java
Xact-1.0/diana/components/WritableEMBLCorbaEntrySource.java
Xact-1.0/diana/components/WriteMenu.java
Xact-1.0/diana/components/Plot.class
Xact-1.0/diana/components/YesNoDialog.java
Xact-1.0/diana/components/ActMain.class
Xact-1.0/diana/components/ActMain$1.class
Xact-1.0/diana/components/ActMain$2.class
Xact-1.0/diana/components/Splash.class
Xact-1.0/diana/components/Splash$1.class
Xact-1.0/diana/components/Splash$2.class
Xact-1.0/diana/components/Splash$3.class
Xact-1.0/diana/components/MessageFrame.class
Xact-1.0/diana/components/MessageFrame$1.class
Xact-1.0/diana/components/MessageFrame$2.class
Xact-1.0/diana/components/MessageFrame$3.class
Xact-1.0/diana/components/LogViewer.class
Xact-1.0/diana/components/LogViewer$1.class
Xact-1.0/diana/components/EntryFileDialog.class
Xact-1.0/diana/components/Comparator.class
Xact-1.0/diana/components/Comparator$1.class
Xact-1.0/diana/components/Comparator$2.class
Xact-1.0/diana/components/Comparator$3.class
Xact-1.0/diana/components/Comparator$4.class
Xact-1.0/diana/components/Comparator$5.class
Xact-1.0/diana/components/Comparator$6.class
Xact-1.0/diana/components/Comparator$7.class
Xact-1.0/diana/components/Comparator$8.class
Xact-1.0/diana/components/Comparator$9.class
Xact-1.0/diana/components/Comparator$10.class
Xact-1.0/diana/components/Comparator$11.class
Xact-1.0/diana/components/Comparator$12.class
Xact-1.0/diana/components/Comparator$13.class
Xact-1.0/diana/components/Comparator$14.class
Xact-1.0/diana/components/Comparator$15.class
Xact-1.0/diana/components/FeatureDisplayOwner.class
Xact-1.0/diana/components/ComparatorDialog.class
Xact-1.0/diana/components/ComparatorDialog$1.class
Xact-1.0/diana/components/ComparatorDialog$2.class
Xact-1.0/diana/components/ComparatorDialog$3.class
Xact-1.0/diana/components/ComparatorDialog$4.class
Xact-1.0/diana/components/ComparatorDialog$5.class
Xact-1.0/diana/components/ComparatorDialog$6.class
Xact-1.0/diana/components/FileViewer.class
Xact-1.0/diana/components/FileDialogEntrySource.class
Xact-1.0/diana/components/FileViewer$1.class
Xact-1.0/diana/components/FileViewer$2.class
Xact-1.0/diana/components/FileViewer$3.class
Xact-1.0/diana/components/MessageDialog.class
Xact-1.0/diana/components/MessageDialog$1.class
Xact-1.0/diana/components/MessageDialog$2.class
Xact-1.0/diana/components/MessageDialog$3.class
Xact-1.0/diana/components/YesNoDialog.class
Xact-1.0/diana/components/YesNoDialog$1.class
Xact-1.0/diana/components/YesNoDialog$2.class
Xact-1.0/diana/components/YesNoDialog$3.class
Xact-1.0/diana/components/BasePlotGroup.class
Xact-1.0/diana/components/BasePlot.class
Xact-1.0/diana/components/DisplayAdjustmentListener.class
Xact-1.0/diana/components/FeatureDisplay.class
Xact-1.0/diana/components/FeatureDisplay$1.class
Xact-1.0/diana/components/FeatureDisplay$2.class
Xact-1.0/diana/components/FeatureDisplay$3.class
Xact-1.0/diana/components/FeatureDisplay$4.class
Xact-1.0/diana/components/FeatureDisplay$5.class
Xact-1.0/diana/components/FeatureDisplay$6.class
Xact-1.0/diana/components/EntryGroupPanel.class
Xact-1.0/diana/components/DisplayComponent.class
Xact-1.0/diana/components/EntryGroupPanel$1.class
Xact-1.0/diana/components/CanvasPanel.class
Xact-1.0/diana/components/CanvasPanel$1.class
Xact-1.0/diana/components/AlignmentViewer.class
Xact-1.0/diana/components/AlignmentViewer$1.class
Xact-1.0/diana/components/AlignmentViewer$2.class
Xact-1.0/diana/components/AlignmentViewer$3.class
Xact-1.0/diana/components/AlignmentViewer$4.class
Xact-1.0/diana/components/AlignmentViewer$5.class
Xact-1.0/diana/components/DisplayAdjustmentEvent.class
Xact-1.0/diana/components/BasePlot$1.class
Xact-1.0/diana/components/Plot$1.class
Xact-1.0/diana/components/Plot$2.class
Xact-1.0/diana/components/Plot$3.class
Xact-1.0/diana/components/Plot$4.class
Xact-1.0/diana/components/Plot$5.class
Xact-1.0/diana/components/Plot$6.class
Xact-1.0/diana/components/Plot$7.class
Xact-1.0/diana/components/FeaturePopup.class
Xact-1.0/diana/components/FeaturePopup$1.class
Xact-1.0/diana/components/FeaturePopup$2.class
Xact-1.0/diana/components/FeaturePopup$3.class
Xact-1.0/diana/components/FeaturePopup$4.class
Xact-1.0/diana/components/FeaturePopup$5.class
Xact-1.0/diana/components/FeaturePopup$6.class
Xact-1.0/diana/components/FeaturePopup$7.class
Xact-1.0/diana/components/EditMenu.class
Xact-1.0/diana/components/FeaturePopup$8.class
Xact-1.0/diana/components/FeaturePopup$9.class
Xact-1.0/diana/components/FeaturePopup$10.class
Xact-1.0/diana/components/FeaturePopup$11.class
Xact-1.0/diana/components/FeaturePopup$12.class
Xact-1.0/diana/components/FeaturePopup$13.class
Xact-1.0/diana/components/FeaturePopup$14.class
Xact-1.0/diana/components/FeaturePopup$15.class
Xact-1.0/diana/components/FeaturePopup$16.class
Xact-1.0/diana/components/FeaturePopup$17.class
Xact-1.0/diana/components/FeaturePopup$18.class
Xact-1.0/diana/components/FeaturePopup$19.class
Xact-1.0/diana/components/FeaturePopup$20.class
Xact-1.0/diana/components/FeaturePopup$21.class
Xact-1.0/diana/components/FeatureEdit.class
Xact-1.0/diana/components/FeatureEdit$1.class
Xact-1.0/diana/components/FeatureEdit$2.class
Xact-1.0/diana/components/FeatureEdit$3.class
Xact-1.0/diana/components/FeatureEdit$4.class
Xact-1.0/diana/components/FeatureEdit$5.class
Xact-1.0/diana/components/FeatureEdit$6.class
Xact-1.0/diana/components/FeatureEdit$7.class
Xact-1.0/diana/components/FeatureEdit$8.class
Xact-1.0/diana/components/FeatureEdit$9.class
Xact-1.0/diana/components/FeatureEdit$10.class
Xact-1.0/diana/components/EditMenu$1.class
Xact-1.0/diana/components/EditMenu$2.class
Xact-1.0/diana/components/EditMenu$3.class
Xact-1.0/diana/components/EditMenu$4.class
Xact-1.0/diana/components/EditMenu$5.class
Xact-1.0/diana/components/EditMenu$6.class
Xact-1.0/diana/components/EditMenu$7.class
Xact-1.0/diana/components/EditMenu$8.class
Xact-1.0/diana/components/EditMenu$9.class
Xact-1.0/diana/components/EditMenu$10.class
Xact-1.0/diana/components/EditMenu$11.class
Xact-1.0/diana/components/EditMenu$12.class
Xact-1.0/diana/components/EditMenu$13.class
Xact-1.0/diana/components/EditMenu$14.class
Xact-1.0/diana/components/EditMenu$15.class
Xact-1.0/diana/components/EditMenu$16.class
Xact-1.0/diana/components/EditMenu$17.class
Xact-1.0/diana/components/EditMenu$18.class
Xact-1.0/diana/components/EditMenu$19.class
Xact-1.0/diana/components/EditMenu$20.class
Xact-1.0/diana/components/EditMenu$21.class
Xact-1.0/diana/components/EditMenu$22.class
Xact-1.0/diana/components/SelectionMenu.class
Xact-1.0/diana/components/EntryEdit.class
Xact-1.0/diana/components/EntryEdit$1.class
Xact-1.0/diana/components/EntryEdit$2.class
Xact-1.0/diana/components/EntryEdit$3.class
Xact-1.0/diana/components/EntryEdit$4.class
Xact-1.0/diana/components/EntryEdit$5.class
Xact-1.0/diana/components/EntryEdit$6.class
Xact-1.0/diana/components/EntryEdit$7.class
Xact-1.0/diana/components/EntryEdit$8.class
Xact-1.0/diana/components/EntryEdit$9.class
Xact-1.0/diana/components/EntryEdit$10.class
Xact-1.0/diana/components/EntryEdit$11.class
Xact-1.0/diana/components/EntryEdit$12.class
Xact-1.0/diana/components/EntryEdit$13.class
Xact-1.0/diana/components/EntryEdit$14.class
Xact-1.0/diana/components/EntryEdit$15.class
Xact-1.0/diana/components/ReadFeaturesActionListener.class
Xact-1.0/diana/components/SaveEntryActionListener.class
Xact-1.0/diana/components/SaveEntryAsActionListener.class
Xact-1.0/diana/components/EntryHeaderEdit.class
Xact-1.0/diana/components/SaveEntryAsEMBLActionListener.class
Xact-1.0/diana/components/SaveEntryAsGenbankActionListener.class
Xact-1.0/diana/components/SaveEntryAsGFFActionListener.class
Xact-1.0/diana/components/SaveEntryAsSubmissionActionListener.class
Xact-1.0/diana/components/EntryHeaderEdit$1.class
Xact-1.0/diana/components/FeatureListFrame.class
Xact-1.0/diana/components/FeatureListFrame$1.class
Xact-1.0/diana/components/FeatureListFrame$2.class
Xact-1.0/diana/components/FeatureListFrame$3.class
Xact-1.0/diana/components/TextRequester.class
Xact-1.0/diana/components/TextRequester$1.class
Xact-1.0/diana/components/TextRequester$2.class
Xact-1.0/diana/components/TextRequester$3.class
Xact-1.0/diana/components/ViewMenu.class
Xact-1.0/diana/components/TextRequesterListener.class
Xact-1.0/diana/components/TextRequesterEvent.class
Xact-1.0/diana/components/ViewMenu$1.class
Xact-1.0/diana/components/ViewMenu$2.class
Xact-1.0/diana/components/ViewMenu$3.class
Xact-1.0/diana/components/ViewMenu$4.class
Xact-1.0/diana/components/ViewMenu$5.class
Xact-1.0/diana/components/ViewMenu$6.class
Xact-1.0/diana/components/ViewMenu$7.class
Xact-1.0/diana/components/ViewMenu$8.class
Xact-1.0/diana/components/ViewMenu$9.class
Xact-1.0/diana/components/ViewMenu$10.class
Xact-1.0/diana/components/ViewMenu$11.class
Xact-1.0/diana/components/ViewMenu$12.class
Xact-1.0/diana/components/ViewMenu$13.class
Xact-1.0/diana/components/ViewMenu$14.class
Xact-1.0/diana/components/ViewMenu$15.class
Xact-1.0/diana/components/ViewMenu$16.class
Xact-1.0/diana/components/ViewMenu$17.class
Xact-1.0/diana/components/ViewMenu$18.class
Xact-1.0/diana/components/ViewMenu$19.class
Xact-1.0/diana/components/ViewMenu$20.class
Xact-1.0/diana/components/ViewMenu$21.class
Xact-1.0/diana/components/ViewMenu$22.class
Xact-1.0/diana/components/ViewMenu$23.class
Xact-1.0/diana/components/ViewMenu$24.class
Xact-1.0/diana/components/ViewMenu$25.class
Xact-1.0/diana/components/ViewMenu$26.class
Xact-1.0/diana/components/ViewMenu$27.class
Xact-1.0/diana/components/ViewMenu$28.class
Xact-1.0/diana/components/ViewMenu$29.class
Xact-1.0/diana/components/SelectionViewer.class
Xact-1.0/diana/components/SelectionViewer$1.class
Xact-1.0/diana/components/EntryGroupInfoDisplay.class
Xact-1.0/diana/components/EntryGroupInfoDisplay$1.class
Xact-1.0/diana/components/EntryGroupInfoDisplay$2.class
Xact-1.0/diana/components/FeatureList.class
Xact-1.0/diana/components/EntryGroupInfoDisplay$3.class
Xact-1.0/diana/components/FeatureList$1.class
Xact-1.0/diana/components/FeatureList$2.class
Xact-1.0/diana/components/FeatureList$3.class
Xact-1.0/diana/components/KeyChooser.class
Xact-1.0/diana/components/KeyChooser$1.class
Xact-1.0/diana/components/KeyChooser$2.class
Xact-1.0/diana/components/KeyChooser$3.class
Xact-1.0/diana/components/KeyChooser$4.class
Xact-1.0/diana/components/KeyChoice.class
Xact-1.0/diana/components/KeyChoice$1.class
Xact-1.0/diana/components/FeatureViewer.class
Xact-1.0/diana/components/FeatureViewer$1.class
Xact-1.0/diana/components/GotoMenu.class
Xact-1.0/diana/components/FeaturePlotGroup.class
Xact-1.0/diana/components/FeaturePlotGroup$1.class
Xact-1.0/diana/components/FeaturePlotGroup$2.class
Xact-1.0/diana/components/FeaturePlotGroup$3.class
Xact-1.0/diana/components/FeaturePlotGroup$4.class
Xact-1.0/diana/components/FeaturePlotGroup$5.class
Xact-1.0/diana/components/SearchResultViewer.class
Xact-1.0/diana/components/SearchResultViewer$1.class
Xact-1.0/diana/components/FeatureInfo.class
Xact-1.0/diana/components/FeatureInfo$1.class
Xact-1.0/diana/components/FeatureInfo$2.class
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Xact-1.0/diana/components/FeatureBaseViewer$1.class
Xact-1.0/diana/components/FeatureAminoAcidViewer.class
Xact-1.0/diana/components/ScoreChangeListener.class
Xact-1.0/diana/components/FeatureAminoAcidViewer$1.class
Xact-1.0/diana/components/ScoreChangeEvent.class
Xact-1.0/diana/components/ScoreChanger.class
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Xact-1.0/diana/components/ScoreChanger$4.class
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Xact-1.0/diana/components/PlotMouseListener.class
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Xact-1.0/diana/components/EntryGroupMenu$4.class
Xact-1.0/diana/components/EntryGroupMenu$5.class
Xact-1.0/diana/components/SelectMenu.class
Xact-1.0/diana/components/EntryGroupMenu$6.class
Xact-1.0/diana/components/SelectMenu$1.class
Xact-1.0/diana/components/SelectMenu$2.class
Xact-1.0/diana/components/SelectMenu$3.class
Xact-1.0/diana/components/SelectMenu$4.class
Xact-1.0/diana/components/SelectMenu$5.class
Xact-1.0/diana/components/SelectMenu$6.class
Xact-1.0/diana/components/SelectMenu$7.class
Xact-1.0/diana/components/SelectMenu$8.class
Xact-1.0/diana/components/SelectMenu$9.class
Xact-1.0/diana/components/SelectMenu$10.class
Xact-1.0/diana/components/SelectMenu$11.class
Xact-1.0/diana/components/SelectMenu$12.class
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Xact-1.0/diana/components/SelectMenu$14.class
Xact-1.0/diana/components/SelectMenu$15.class
Xact-1.0/diana/components/SelectMenu$16.class
Xact-1.0/diana/components/GotoMenu$1.class
Xact-1.0/diana/components/GotoMenu$2.class
Xact-1.0/diana/components/GotoMenu$3.class
Xact-1.0/diana/components/GotoMenu$4.class
Xact-1.0/diana/components/GotoMenu$5.class
Xact-1.0/diana/components/GotoMenu$6.class
Xact-1.0/diana/components/GotoMenu$7.class
Xact-1.0/diana/components/GotoMenu$8.class
Xact-1.0/diana/components/GotoMenu$9.class
Xact-1.0/diana/components/GotoMenu$10.class
Xact-1.0/diana/components/AddMenu.class
Xact-1.0/diana/components/AddMenu$1.class
Xact-1.0/diana/components/AddMenu$2.class
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Xact-1.0/diana/components/AddMenu$4.class
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Xact-1.0/diana/components/ProcessWatcher.class
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Xact-1.0/diana/sequence/BasePattern.java
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Xact-1.0/diana/sequence/Bases.java
Xact-1.0/diana/sequence/Marker.java
Xact-1.0/diana/sequence/MarkerChangeEvent.java
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Xact-1.0/diana/sequence/MarkerRange.java
Xact-1.0/diana/sequence/MarkerRangeVector.java
Xact-1.0/diana/sequence/NoSequenceException.java
Xact-1.0/diana/sequence/SequenceChangeEvent.java
Xact-1.0/diana/sequence/SequenceChangeListener.java
Xact-1.0/diana/sequence/Strand.java
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Xact-1.0/collections/Assertable.java
Xact-1.0/collections/Bag.java
Xact-1.0/collections/BinaryFunction.java
Xact-1.0/collections/CEImpl.java
Xact-1.0/collections/CLCell.java
Xact-1.0/collections/CLEnumeration.java
Xact-1.0/collections/Cell.java
Xact-1.0/collections/CheckedBag.java
Xact-1.0/collections/CheckedCollection.java
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Xact-1.0/collections/CheckedSeq.java
Xact-1.0/collections/CheckedSet.java
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Xact-1.0/collections/CircularList.java
Xact-1.0/collections/Collection.java
Xact-1.0/collections/CollectionEnumeration.java
Xact-1.0/collections/Comparator.java
Xact-1.0/collections/Dynarray.java
Xact-1.0/collections/CorruptedEnumerationException.java
Xact-1.0/collections/DAEnumeration.java
Xact-1.0/collections/DefaultComparator.java
Xact-1.0/collections/DefaultImplementations.java
Xact-1.0/collections/ElementSortedCollection.java
Xact-1.0/collections/FilteringEnumeration.java
Xact-1.0/collections/Function.java
Xact-1.0/collections/HTEnumeration.java
Xact-1.0/collections/HTPairEnumeration.java
Xact-1.0/collections/HashTableParams.java
Xact-1.0/collections/HashedMap.java
Xact-1.0/collections/HashedSet.java
Xact-1.0/collections/IllegalElementException.java
Xact-1.0/collections/Immutable.java
Xact-1.0/collections/ImplementationCheckable.java
Xact-1.0/collections/IncrBag.java
Xact-1.0/collections/ImplementationError.java
Xact-1.0/collections/IncrCollectionEnumeration.java
Xact-1.0/collections/IncrImpl.java
Xact-1.0/collections/IncrMap.java
Xact-1.0/collections/IncrSeq.java
Xact-1.0/collections/IncrSet.java
Xact-1.0/collections/InterleavingEnumeration.java
Xact-1.0/collections/KeySortedCollection.java
Xact-1.0/collections/LBEnumeration.java
Xact-1.0/collections/LLCell.java
Xact-1.0/collections/LLCellEnumeration.java
Xact-1.0/collections/LLMap.java
Xact-1.0/collections/LLPair.java
Xact-1.0/collections/LLPairEnumeration.java
Xact-1.0/collections/LinkedBuffer.java
Xact-1.0/collections/LinkedList.java
Xact-1.0/collections/Map.java
Xact-1.0/collections/MappingEnumeration.java
Xact-1.0/collections/Pair.java
Xact-1.0/collections/Predicate.java
Xact-1.0/collections/Procedure.java
Xact-1.0/collections/RBCell.java
Xact-1.0/collections/RBCellEnumeration.java
Xact-1.0/collections/RBMap.java
Xact-1.0/collections/RBPair.java
Xact-1.0/collections/RBPairEnumeration.java
Xact-1.0/collections/RBTree.java
Xact-1.0/collections/Seq.java
Xact-1.0/collections/Set.java
Xact-1.0/collections/SimpleTest.java
Xact-1.0/collections/SortableCollection.java
Xact-1.0/collections/UpdatableBag.java
Xact-1.0/collections/UpdatableBagImpl.java
Xact-1.0/collections/UpdatableCollection.java
Xact-1.0/collections/UpdatableImpl.java
Xact-1.0/collections/UpdatableMap.java
Xact-1.0/collections/UpdatableMapImpl.java
Xact-1.0/collections/javaMake
Xact-1.0/collections/UpdatableSeq.java
Xact-1.0/collections/UpdatableSeqImpl.java
Xact-1.0/collections/UpdatableSet.java
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Xact-1.0/collections/Dynarray.class
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Xact-1.0/collections/SortableCollection.class
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Xact-1.0/collections/UpdatableCollection.class
Xact-1.0/collections/IllegalElementException.class
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Xact-1.0/collections/ElementSortedCollection.class
Xact-1.0/collections/Bag.class
Xact-1.0/collections/Set.class
Xact-1.0/collections/RBTree.class
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Xact-1.0/collections/Cell.class
Xact-1.0/collections/DefaultComparator.class
Xact-1.0/collections/RBCellEnumeration.class
Xact-1.0/collections/Keyed.class
Xact-1.0/Dad.class
Xact-1.0/AppGlobal.class
Xbin/act
X@dirrm act-1.0/CVS
X@dirrm act-1.0/META-INF/CVS
X@dirrm act-1.0/META-INF
X@dirrm act-1.0/uk/CVS
X@dirrm act-1.0/uk/ac/CVS
X@dirrm act-1.0/uk/ac/sanger/CVS
X@dirrm act-1.0/uk/ac/sanger/pathogens/CVS
X@dirrm act-1.0/uk/ac/sanger/pathogens/embl/CVS
X@dirrm act-1.0/uk/ac/sanger/pathogens/embl
X@dirrm act-1.0/uk/ac/sanger/pathogens
X@dirrm act-1.0/uk/ac/sanger
X@dirrm act-1.0/uk/ac
X@dirrm act-1.0/uk
X@dirrm act-1.0/diana/CVS
X@dirrm act-1.0/diana/plot/CVS
X@dirrm act-1.0/diana/plot
X@dirrm act-1.0/diana/components/CVS
X@dirrm act-1.0/diana/components
X@dirrm act-1.0/diana/sequence/CVS
X@dirrm act-1.0/diana/sequence
X@dirrm act-1.0/diana
X@dirrm act-1.0/etc/CVS
X@dirrm act-1.0/etc
X@dirrm act-1.0/collections/CVS
X@dirrm act-1.0/collections
X@dirrm act-1.0
END-of-act/pkg-plist
exit

>Release-Note:
>Audit-Trail:

From: Camson Huynh <chuynh@biolateral.com.au>
To: freebsd-gnats-submit@FreeBSD.org, chuynh@biolateral.com.au
Cc:  
Subject: Re: ports/35753: New Port: biology/act
Date: Wed, 17 Apr 2002 09:26:51 +1000

 diff -ruN act.orig/Makefile act/Makefile
 --- act.orig/Makefile   Wed Apr 17 09:23:47 2002
 +++ act/Makefile        Wed Apr 17 09:22:50 2002
 @@ -7,8 +7,9 @@
 
  PORTNAME=      act
  PORTVERSION=   1.0
 +PORTREVISION=  0
  CATEGORIES=    biology
 -MASTER_SITES=  http://www.sanger.ac.uk/Software/Act/v1/
 +MASTER_SITES=  http://www.sanger.ac.uk/Software/ACT/v1/
  DISTNAME=      act_compiled_v1
 
  MAINTAINER=    chuynh@biolateral.com.au
 diff -ruN act.orig/pkg-descr act/pkg-descr
 --- act.orig/pkg-descr  Wed Apr 17 09:23:47 2002
 +++ act/pkg-descr       Wed Apr 17 09:24:29 2002
 @@ -9,4 +9,4 @@
  tblastx search that has been processed by MSPcrunch. MSPcrunch must be
 run
  with the -d flag for the output to be usable by ACT.
 
 -WWW:  http://www.sanger.ac.uk/Software/Act/manual
 +WWW:  http://www.sanger.ac.uk/Software/ACT/manual
 
 
 --
 Camson Huynh - Senior Systems Administrator   BioLateral Pty Ltd
 Email:  chuynh@biolateral.com.au              Level 5, 92 Parramatta Rd,
 Phone:  +61 2 9036 3002                       Camperdown NSW 2050 Australia
 Mobile: +61 413 919 233                       http://www.biolateral.com.au/
 
 
 
State-Changed-From-To: open->closed 
State-Changed-By: edwin 
State-Changed-When: Thu Jan 16 06:23:01 PST 2003 
State-Changed-Why:  
Commited, thanks! 
(sorry for the delay) 

http://www.freebsd.org/cgi/query-pr.cgi?pr=35753 
>Unformatted:
