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Message-Id: <20140226025203.e5d7cada62bd416b13276cb8@yahoo.com>
Date: Wed, 26 Feb 2014 02:52:03 +0900
From: KATO Tsuguru <tkato432@yahoo.com>
To: FreeBSD-gnats-submit@FreeBSD.org
Subject: biology/seaview: Update to version 4.4.3

>Number:         187041
>Category:       ports
>Synopsis:       biology/seaview: Update to version 4.4.3
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    miwi
>State:          closed
>Quarter:        
>Keywords:       
>Date-Required:  
>Class:          change-request
>Submitter-Id:   current-users
>Arrival-Date:   Tue Feb 25 18:10:01 UTC 2014
>Closed-Date:    Thu Feb 27 08:46:44 UTC 2014
>Last-Modified:  Thu Feb 27 08:50:05 UTC 2014
>Originator:     KATO Tsuguru
>Release:        FreeBSD 8.4-RELEASE-p7 i386
>Organization:
>Environment:
>Description:
- Update to version 4.4.3

>How-To-Repeat:
>Fix:

diff -urN /usr/ports/biology/seaview/Makefile biology/seaview/Makefile
--- /usr/ports/biology/seaview/Makefile	2013-12-12 02:41:38.000000000 +0900
+++ biology/seaview/Makefile	2014-02-26 00:00:00.000000000 +0900
@@ -2,7 +2,7 @@
 # $FreeBSD: head/biology/seaview/Makefile 336171 2013-12-11 14:43:51Z bapt $
 
 PORTNAME=	seaview
-PORTVERSION=	4.4.2
+PORTVERSION=	4.4.3
 PORTEPOCH=	1
 CATEGORIES=	biology
 MASTER_SITES=	http://pbil.univ-lyon1.fr/software/seaview_data/archive/
@@ -13,14 +13,10 @@
 
 LIB_DEPENDS=	libfltk.so:${PORTSDIR}/x11-toolkits/fltk
 
-OPTIONS_DEFINE=	PDFLIB
-OPTIONS_DEFAULT=PDFLIB
-PDFLIB_DESC=	PDFlib support
-
 WRKSRC=		${WRKDIR}/${PORTNAME}
 
+USES=		gmake
 USE_XORG=	xext xft xinerama
-USE_GMAKE=	yes
 MAKE_ENV=	HELPFILE='-DDEFAULT_HELPFILE=\"${DATADIR}/seaview.html\"' \
 		PHYMLNAME='-DPHYMLNAME=\"phyml\"' \
 		IFLTK='-I${LOCALBASE}/include' \
@@ -29,21 +25,18 @@
 		OPT="${CFLAGS}"
 ALL_TARGET=	${PORTNAME}
 
-PLIST_FILES=	bin/seaview %%DATADIR%%/seaview.html
+PLIST_FILES=	bin/seaview man/man1/seaview.1.gz %%DATADIR%%/seaview.html
 PLIST_DIRS=	%%DATADIR%%
 
 DESKTOP_ENTRIES="SeaView" "${COMMENT}" "" \
 		"${PORTNAME}" "Biology;Science;" "true"
 
-NO_STAGE=	yes
-.include <bsd.port.options.mk>
-
-.if ${PORT_OPTIONS:MPDFLIB}
-LIB_DEPENDS+=	libpdf.so:${PORTSDIR}/print/pdflib
-MAKE_ENV+=	LPDF='-L${LOCALBASE}/lib -lpdf'
-.else
-MAKE_ENV+=	PDF_PS_FLAGS='-DNO_PDF'
-.endif
+OPTIONS_DEFINE=		PDFLIB
+OPTIONS_DEFAULT=	PDFLIB
+PDFLIB_DESC=		PDFlib support
+PDFLIB_LIB_DEPENDS=	libpdf.so:${PORTSDIR}/print/pdflib
+PDFLIB_MAKE_ENV=	LPDF='-L${LOCALBASE}/lib -lpdf'
+PDFLIB_MAKE_ENV_OFF=	PDF_PS_FLAGS='-DNO_PDF'
 
 post-patch:
 	@${REINPLACE_CMD} -e \
@@ -56,8 +49,12 @@
 		 s|-lpthread|-pthread|' ${WRKSRC}/Makefile
 
 do-install:
-	(cd ${WRKSRC} && ${INSTALL_PROGRAM} seaview ${PREFIX}/bin)
-	@${MKDIR} ${DATADIR}
-	(cd ${WRKSRC} && ${INSTALL_DATA} seaview.html ${DATADIR})
+	(cd ${WRKSRC} && ${INSTALL_PROGRAM} seaview \
+		${STAGEDIR}${PREFIX}/bin)
+	(cd ${WRKSRC} && ${INSTALL_MAN} seaview.1 \
+		${STAGEDIR}${MANPREFIX}/man/man1)
+	@${MKDIR} ${STAGEDIR}${DATADIR}
+	(cd ${WRKSRC} && ${INSTALL_DATA} seaview.html \
+		${STAGEDIR}${DATADIR})
 
 .include <bsd.port.mk>
diff -urN /usr/ports/biology/seaview/distinfo biology/seaview/distinfo
--- /usr/ports/biology/seaview/distinfo	2013-11-06 22:05:44.000000000 +0900
+++ biology/seaview/distinfo	2014-02-26 00:00:00.000000000 +0900
@@ -1,2 +1,2 @@
-SHA256 (seaview_4.4.2.tar.gz) = 8f51c865556d447d34e5a1e2e9760fc309e9ca62b4ac43ea3e0aa648b5972800
-SIZE (seaview_4.4.2.tar.gz) = 323856
+SHA256 (seaview_4.4.3.tar.gz) = cf547cd5d81b85da3bf5c9446c514250d2253714ad66cabbeaa320f416e79d43
+SIZE (seaview_4.4.3.tar.gz) = 325513
>Release-Note:
>Audit-Trail:
Responsible-Changed-From-To: freebsd-ports-bugs->miwi 
Responsible-Changed-By: edwin 
Responsible-Changed-When: Tue Feb 25 18:10:32 UTC 2014 
Responsible-Changed-Why:  
miwi@ wants this submitter's PRs (via the GNATS Auto Assign Tool) 

http://www.freebsd.org/cgi/query-pr.cgi?pr=187041 
State-Changed-From-To: open->closed 
State-Changed-By: miwi 
State-Changed-When: Thu Feb 27 08:46:44 UTC 2014 
State-Changed-Why:  
Committed. Thanks! 

http://www.freebsd.org/cgi/query-pr.cgi?pr=187041 

From: dfilter@FreeBSD.ORG (dfilter service)
To: bug-followup@FreeBSD.org
Cc:  
Subject: Re: ports/187041: commit references a PR
Date: Thu, 27 Feb 2014 08:46:50 +0000 (UTC)

 Author: miwi
 Date: Thu Feb 27 08:46:42 2014
 New Revision: 346262
 URL: http://svnweb.freebsd.org/changeset/ports/346262
 QAT: https://qat.redports.org/buildarchive/r346262/
 
 Log:
   - Stage support
   - Update to version 4.4.3
   
   PR:		187041
   Submitted by:	ports fury
 
 Modified:
   head/biology/seaview/Makefile
   head/biology/seaview/distinfo
 
 Modified: head/biology/seaview/Makefile
 ==============================================================================
 --- head/biology/seaview/Makefile	Thu Feb 27 08:45:16 2014	(r346261)
 +++ head/biology/seaview/Makefile	Thu Feb 27 08:46:42 2014	(r346262)
 @@ -2,7 +2,7 @@
  # $FreeBSD$
  
  PORTNAME=	seaview
 -PORTVERSION=	4.4.2
 +PORTVERSION=	4.4.3
  PORTEPOCH=	1
  CATEGORIES=	biology
  MASTER_SITES=	http://pbil.univ-lyon1.fr/software/seaview_data/archive/
 @@ -13,14 +13,10 @@ COMMENT=	Multiple DNA/protein sequence a
  
  LIB_DEPENDS=	libfltk.so:${PORTSDIR}/x11-toolkits/fltk
  
 -OPTIONS_DEFINE=	PDFLIB
 -OPTIONS_DEFAULT=PDFLIB
 -PDFLIB_DESC=	PDFlib support
 -
  WRKSRC=		${WRKDIR}/${PORTNAME}
  
 +USES=		gmake
  USE_XORG=	xext xft xinerama
 -USE_GMAKE=	yes
  MAKE_ENV=	HELPFILE='-DDEFAULT_HELPFILE=\"${DATADIR}/seaview.html\"' \
  		PHYMLNAME='-DPHYMLNAME=\"phyml\"' \
  		IFLTK='-I${LOCALBASE}/include' \
 @@ -29,21 +25,18 @@ MAKE_ENV=	HELPFILE='-DDEFAULT_HELPFILE=\
  		OPT="${CFLAGS}"
  ALL_TARGET=	${PORTNAME}
  
 -PLIST_FILES=	bin/seaview %%DATADIR%%/seaview.html
 +PLIST_FILES=	bin/seaview man/man1/seaview.1.gz %%DATADIR%%/seaview.html
  PLIST_DIRS=	%%DATADIR%%
  
  DESKTOP_ENTRIES="SeaView" "${COMMENT}" "" \
  		"${PORTNAME}" "Biology;Science;" "true"
  
 -NO_STAGE=	yes
 -.include <bsd.port.options.mk>
 -
 -.if ${PORT_OPTIONS:MPDFLIB}
 -LIB_DEPENDS+=	libpdf.so:${PORTSDIR}/print/pdflib
 -MAKE_ENV+=	LPDF='-L${LOCALBASE}/lib -lpdf'
 -.else
 -MAKE_ENV+=	PDF_PS_FLAGS='-DNO_PDF'
 -.endif
 +OPTIONS_DEFINE=		PDFLIB
 +OPTIONS_DEFAULT=	PDFLIB
 +PDFLIB_DESC=		PDFlib support
 +PDFLIB_LIB_DEPENDS=	libpdf.so:${PORTSDIR}/print/pdflib
 +PDFLIB_MAKE_ENV=	LPDF='-L${LOCALBASE}/lib -lpdf'
 +PDFLIB_MAKE_ENV_OFF=	PDF_PS_FLAGS='-DNO_PDF'
  
  post-patch:
  	@${REINPLACE_CMD} -e \
 @@ -56,8 +49,12 @@ post-patch:
  		 s|-lpthread|-pthread|' ${WRKSRC}/Makefile
  
  do-install:
 -	(cd ${WRKSRC} && ${INSTALL_PROGRAM} seaview ${PREFIX}/bin)
 -	@${MKDIR} ${DATADIR}
 -	(cd ${WRKSRC} && ${INSTALL_DATA} seaview.html ${DATADIR})
 +	(cd ${WRKSRC} && ${INSTALL_PROGRAM} seaview \
 +		${STAGEDIR}${PREFIX}/bin)
 +	(cd ${WRKSRC} && ${INSTALL_MAN} seaview.1 \
 +		${STAGEDIR}${MANPREFIX}/man/man1)
 +	@${MKDIR} ${STAGEDIR}${DATADIR}
 +	(cd ${WRKSRC} && ${INSTALL_DATA} seaview.html \
 +		${STAGEDIR}${DATADIR})
  
  .include <bsd.port.mk>
 
 Modified: head/biology/seaview/distinfo
 ==============================================================================
 --- head/biology/seaview/distinfo	Thu Feb 27 08:45:16 2014	(r346261)
 +++ head/biology/seaview/distinfo	Thu Feb 27 08:46:42 2014	(r346262)
 @@ -1,2 +1,2 @@
 -SHA256 (seaview_4.4.2.tar.gz) = 8f51c865556d447d34e5a1e2e9760fc309e9ca62b4ac43ea3e0aa648b5972800
 -SIZE (seaview_4.4.2.tar.gz) = 323856
 +SHA256 (seaview_4.4.3.tar.gz) = cf547cd5d81b85da3bf5c9446c514250d2253714ad66cabbeaa320f416e79d43
 +SIZE (seaview_4.4.3.tar.gz) = 325513
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>Unformatted:
