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Date: Sun, 7 Apr 2013 00:28:59 GMT
From: Jason Bacon <jwbacon@tds.net>
To: freebsd-gnats-submit@FreeBSD.org
Subject: New port: science/voro++
X-Send-Pr-Version: www-3.1
X-GNATS-Notify:

>Number:         177678
>Category:       ports
>Synopsis:       New port: science/voro++
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    jgh
>State:          closed
>Quarter:        
>Keywords:       
>Date-Required:  
>Class:          change-request
>Submitter-Id:   current-users
>Arrival-Date:   Sun Apr 07 00:30:00 UTC 2013
>Closed-Date:    Tue Apr 16 22:47:25 UTC 2013
>Last-Modified:  Tue Apr 16 22:50:00 UTC 2013
>Originator:     Jason Bacon
>Release:        8.3-RELEASE
>Organization:
Acadix Consulting, LLC
>Environment:
FreeBSD sculpin.jbacon.dyndns.org 8.3-RELEASE FreeBSD 8.3-RELEASE #0: Mon Apr  9 21:23:18 UTC 2012     root@mason.cse.buffalo.edu:/usr/obj/usr/src/sys/GENERIC  amd64
>Description:
Voro++ is a software library for carrying out three-dimensional computations
of the Voronoi tessellation. A distinguishing feature of the Voro++ library
is that it carries out cell-based calculations, computing the Voronoi cell
for each particle individually. It is particularly well-suited for
applications that rely on cell-based statistics, where features of Voronoi
cells (eg. volume, centroid, number of faces) can be used to analyze a
system of particles.

Voro++ is a prerequisite for the coming LAMMPS port.
>How-To-Repeat:

>Fix:


Patch attached with submission follows:

# This is a shell archive.  Save it in a file, remove anything before
# this line, and then unpack it by entering "sh file".  Note, it may
# create directories; files and directories will be owned by you and
# have default permissions.
#
# This archive contains:
#
#	voro++
#	voro++/pkg-plist
#	voro++/pkg-descr
#	voro++/Makefile
#	voro++/distinfo
#
echo c - voro++
mkdir -p voro++ > /dev/null 2>&1
echo x - voro++/pkg-plist
sed 's/^X//' >voro++/pkg-plist << '026604b4cdcf9d40b1488af235ab23a2'
Xbin/voro++
Xinclude/voro++/c_loops.hh
Xinclude/voro++/cell.hh
Xinclude/voro++/common.hh
Xinclude/voro++/config.hh
Xinclude/voro++/container.hh
Xinclude/voro++/container_prd.hh
Xinclude/voro++/pre_container.hh
Xinclude/voro++/rad_option.hh
Xinclude/voro++/unitcell.hh
Xinclude/voro++/v_base.hh
Xinclude/voro++/v_compute.hh
Xinclude/voro++/voro++.hh
Xinclude/voro++/wall.hh
Xinclude/voro++/worklist.hh
Xlib/libvoro++.a
X@dirrm include/voro++
026604b4cdcf9d40b1488af235ab23a2
echo x - voro++/pkg-descr
sed 's/^X//' >voro++/pkg-descr << 'faa320a333cb7c3d33b7d67cbda782ed'
XVoro++ is a software library for carrying out three-dimensional computations
Xof the Voronoi tessellation. A distinguishing feature of the Voro++ library
Xis that it carries out cell-based calculations, computing the Voronoi cell
Xfor each particle individually. It is particularly well-suited for
Xapplications that rely on cell-based statistics, where features of Voronoi
Xcells (eg. volume, centroid, number of faces) can be used to analyze a
Xsystem of particles.
X
XWWW:	http://math.lbl.gov/voro++/
faa320a333cb7c3d33b7d67cbda782ed
echo x - voro++/Makefile
sed 's/^X//' >voro++/Makefile << '78018bb6fbcee185b224caf0d7e21b77'
X# Created by:	Jason Bacon
X# $FreeBSD$
X
XPORTNAME=	voro++
XPORTVERSION=	0.4.5
XCATEGORIES=	science
XMASTER_SITES=	http://math.lbl.gov/voro++/download/dir/
X
XMAINTAINER=	jwbacon@tds.net
XCOMMENT=	Three-dimensional computations of the Voronoi tessellation
X
XLICENSE=	BSD
XUSE_GMAKE=	yes
X
XMAN1=		voro++.1
X
Xpost-patch:
X	${REINPLACE_CMD} \
X		-e 's|CC=|CC?=|g' \
X		-e 's|CFLAGS=|CFLAGS?=|g' \
X		-e "s|/usr/local|${PREFIX}|g" \
X		${WRKSRC}/config.mk
X
X.include <bsd.port.mk>
78018bb6fbcee185b224caf0d7e21b77
echo x - voro++/distinfo
sed 's/^X//' >voro++/distinfo << '11302459545baab019b2552afa7ad941'
XSHA256 (voro++-0.4.5.tar.gz) = 9e67e2392ae027cf51d3487038848dc980c6c3e86f1447053efac9309bcee5f5
XSIZE (voro++-0.4.5.tar.gz) = 737883
11302459545baab019b2552afa7ad941
exit



>Release-Note:
>Audit-Trail:
Responsible-Changed-From-To: freebsd-ports-bugs->jgh 
Responsible-Changed-By: jgh 
Responsible-Changed-When: Sun Apr 7 02:04:32 UTC 2013 
Responsible-Changed-Why:  
I'll take it. 

http://www.freebsd.org/cgi/query-pr.cgi?pr=177678 
State-Changed-From-To: open->closed 
State-Changed-By: jgh 
State-Changed-When: Tue Apr 16 22:47:25 UTC 2013 
State-Changed-Why:  
New port added, with minor changes. Thanks! 

http://www.freebsd.org/cgi/query-pr.cgi?pr=177678 

From: dfilter@FreeBSD.ORG (dfilter service)
To: bug-followup@FreeBSD.org
Cc:  
Subject: Re: ports/177678: commit references a PR
Date: Tue, 16 Apr 2013 22:46:31 +0000 (UTC)

 Author: jgh
 Date: Tue Apr 16 22:46:18 2013
 New Revision: 315916
 URL: http://svnweb.freebsd.org/changeset/ports/315916
 
 Log:
   - add new port: science/voro++
   
   Voro++ is a software library for carrying out three-dimensional computations
   of the Voronoi tessellation. A distinguishing feature of the Voro++ library
   is that it carries out cell-based calculations, computing the Voronoi cell
   for each particle individually. It is particularly well-suited for
   applications that rely on cell-based statistics, where features of Voronoi
   cells (eg. volume, centroid, number of faces) can be used to analyze a
   system of particles.
   
   WWW: http://math.lbl.gov/voro++/
   
   PR:		177678
   Submitted by:	jwbacon@tds.net
   
   Feature safe:	yes
 
 Added:
   head/science/voro++/
   head/science/voro++/Makefile   (contents, props changed)
   head/science/voro++/distinfo   (contents, props changed)
   head/science/voro++/pkg-descr   (contents, props changed)
   head/science/voro++/pkg-plist   (contents, props changed)
 Modified:
   head/science/Makefile
 
 Modified: head/science/Makefile
 ==============================================================================
 --- head/science/Makefile	Tue Apr 16 22:37:32 2013	(r315915)
 +++ head/science/Makefile	Tue Apr 16 22:46:18 2013	(r315916)
 @@ -193,6 +193,7 @@
      SUBDIR += v_sim
      SUBDIR += veusz
      SUBDIR += vmd
 +    SUBDIR += voro++
      SUBDIR += x11iraf
      SUBDIR += xmakemol
      SUBDIR += xmds
 
 Added: head/science/voro++/Makefile
 ==============================================================================
 --- /dev/null	00:00:00 1970	(empty, because file is newly added)
 +++ head/science/voro++/Makefile	Tue Apr 16 22:46:18 2013	(r315916)
 @@ -0,0 +1,25 @@
 +# Created by: Jason Bacon
 +# $FreeBSD$
 +
 +PORTNAME=	voro++
 +PORTVERSION=	0.4.5
 +CATEGORIES=	science
 +MASTER_SITES=	http://math.lbl.gov/voro++/download/dir/
 +
 +MAINTAINER=	jwbacon@tds.net
 +COMMENT=	Three-dimensional computations of the Voronoi tessellation
 +
 +LICENSE=	BSD
 +
 +USE_GMAKE=	yes
 +
 +MAN1=		voro++.1
 +
 +post-patch-script:
 +	${REINPLACE_CMD} \
 +		-e 's|CC=|CC?=|g' \
 +		-e 's|CFLAGS=|CFLAGS?=|g' \
 +		-e "s|/usr/local|${PREFIX}|g" \
 +		${WRKSRC}/config.mk
 +
 +.include <bsd.port.mk>
 
 Added: head/science/voro++/distinfo
 ==============================================================================
 --- /dev/null	00:00:00 1970	(empty, because file is newly added)
 +++ head/science/voro++/distinfo	Tue Apr 16 22:46:18 2013	(r315916)
 @@ -0,0 +1,2 @@
 +SHA256 (voro++-0.4.5.tar.gz) = 9e67e2392ae027cf51d3487038848dc980c6c3e86f1447053efac9309bcee5f5
 +SIZE (voro++-0.4.5.tar.gz) = 737883
 
 Added: head/science/voro++/pkg-descr
 ==============================================================================
 --- /dev/null	00:00:00 1970	(empty, because file is newly added)
 +++ head/science/voro++/pkg-descr	Tue Apr 16 22:46:18 2013	(r315916)
 @@ -0,0 +1,9 @@
 +Voro++ is a software library for carrying out three-dimensional computations
 +of the Voronoi tessellation. A distinguishing feature of the Voro++ library
 +is that it carries out cell-based calculations, computing the Voronoi cell
 +for each particle individually. It is particularly well-suited for
 +applications that rely on cell-based statistics, where features of Voronoi
 +cells (eg. volume, centroid, number of faces) can be used to analyze a
 +system of particles.
 +
 +WWW: http://math.lbl.gov/voro++/
 
 Added: head/science/voro++/pkg-plist
 ==============================================================================
 --- /dev/null	00:00:00 1970	(empty, because file is newly added)
 +++ head/science/voro++/pkg-plist	Tue Apr 16 22:46:18 2013	(r315916)
 @@ -0,0 +1,17 @@
 +bin/voro++
 +include/voro++/c_loops.hh
 +include/voro++/cell.hh
 +include/voro++/common.hh
 +include/voro++/config.hh
 +include/voro++/container.hh
 +include/voro++/container_prd.hh
 +include/voro++/pre_container.hh
 +include/voro++/rad_option.hh
 +include/voro++/unitcell.hh
 +include/voro++/v_base.hh
 +include/voro++/v_compute.hh
 +include/voro++/voro++.hh
 +include/voro++/wall.hh
 +include/voro++/worklist.hh
 +lib/libvoro++.a
 +@dirrm include/voro++
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>Unformatted:
