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Date: Fri, 28 Sep 2012 09:43:42 GMT
From: David Naylor <naylor.b.david@gmail.com>
To: freebsd-gnats-submit@FreeBSD.org
Subject: [patch] update math/R-cran-car from 2.0-12 to 2.0-14
X-Send-Pr-Version: www-3.1
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>Number:         172136
>Category:       ports
>Synopsis:       [patch] update math/R-cran-car from 2.0-12 to 2.0-14
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          closed
>Quarter:        
>Keywords:       
>Date-Required:  
>Class:          maintainer-update
>Submitter-Id:   current-users
>Arrival-Date:   Fri Sep 28 09:50:06 UTC 2012
>Closed-Date:    Mon Oct 01 09:53:00 UTC 2012
>Last-Modified:  Mon Oct  1 10:00:17 UTC 2012
>Originator:     David Naylor
>Release:        
>Organization:
>Environment:
>Description:
Changes to Version 2.0-14

    o Smoothers now given as arguments to scatterplot(), scatterplotMatrix(), residualPlots() and other functions; gamLine(), loessLine() (default), and quantregLine() smoothers provided.

    o linearHypothesis.mer() and Anova.mer() now consistent with pbkrtest version 0.3-2.

    o Small changes and fixes.

Changes to Version 2.0-13

    o Added point marking (id.n, etc.) to dataEllipse

    o Changed the default for id.method with the invTranPlot to "x".

    o The ncvTest has been rewritten for stability, and unneeded 'data', 'subset' and 'na.action' argument have been removed

    o Added new function 'Boot' that is a simple front-end to boot::boot that will be useful when bootstrapping regression models.  Implemented for lm and glm, but this is likely to work for many other S3 regression models with and 'update' method, 'subset' argument.

    o Fixed bug in 'compareCoefs' with non-full rank models

    o Modified 'bootCase' to return a matrix of class c("bootCase", "matrix") so generic functions can be written to summarize these objects.

    o Minor changes to the returned value of showLabels to give both the label and the corresponding row number.  showLabels documentation tweaked.

    o Improved handling of center.pch argument to ellipse() (suggestion of Rob Kushler).

    o New test argument for linearHypothesis.mer()  and test.statistic argument for Anova.mer() for F-tests with Kenward/Roger df, provided by pbkrtest package.

    o Anova.mlm() now will do univariate repeated-measures ANOVA even if the error SSP matrix is singular.

    o hccm() will now accept a weighted linear models (suggestion of Stefan Holst Bache).

    o deltaMethod.default() now applies coef() and vcov() to a model for which these are supported (generalizing a suggestion by Scott Kostyshak).

    o Fixed handling of labels argument in scatterplot.formula() and scatterplotMatrix.formula().

    o Fixed qqPlot.default() so that it honors line="none" (bug reported by Rob Kushler).

    o Added new default method for confidenceEllipse(), which now can construct confidence ellipses for linear functions of coefficients.

    o globalVariables() called for R 2.15.1 or later.

    o Fixed bug in logit() when percents=TRUE and largest percent is 1 (reported by Eric Goodwin).

    o Added radius argument to scatter3d() (suggestion of Antonino Messina).

    o Fixed spurious errors message in scatter3d() when groups present but surface=FALSE (reported by David L. Carlson).


>How-To-Repeat:

>Fix:


Patch attached with submission follows:

diff -ur /usr/ports/math/R-cran-car/Makefile R-cran-car/Makefile
--- /usr/ports/math/R-cran-car/Makefile	2012-06-27 03:21:31.000000000 +0200
+++ R-cran-car/Makefile	2012-09-28 10:14:40.000000000 +0200
@@ -6,7 +6,7 @@
 #
 
 PORTNAME=	car
-DISTVERSION=	2.0-12
+DISTVERSION=	2.0-14
 PORTREVISION=	2
 CATEGORIES=	math
 DISTNAME=	${PORTNAME}_${DISTVERSION}
diff -ur /usr/ports/math/R-cran-car/distinfo R-cran-car/distinfo
--- /usr/ports/math/R-cran-car/distinfo	2012-03-28 03:17:00.000000000 +0200
+++ R-cran-car/distinfo	2012-09-28 10:18:13.000000000 +0200
@@ -1,2 +1,2 @@
-SHA256 (car_2.0-12.tar.gz) = b8f1f1dda6a66d6882dff06cece1b71089c922684b3103d89cd3ae44b0c595a5
-SIZE (car_2.0-12.tar.gz) = 319291
+SHA256 (car_2.0-14.tar.gz) = cfddd7a6cc211281b01667ca491d0fafc95936bdb49b466e721cb777b3747319
+SIZE (car_2.0-14.tar.gz) = 330019


>Release-Note:
>Audit-Trail:
State-Changed-From-To: open->closed 
State-Changed-By: wen 
State-Changed-When: Mon Oct 1 09:52:59 UTC 2012 
State-Changed-Why:  
Committed, with minor changes. Thanks! 

http://www.freebsd.org/cgi/query-pr.cgi?pr=172136 

From: dfilter@FreeBSD.ORG (dfilter service)
To: bug-followup@FreeBSD.org
Cc:  
Subject: Re: ports/172136: commit references a PR
Date: Mon,  1 Oct 2012 09:51:26 +0000 (UTC)

 Author: wen
 Date: Mon Oct  1 09:51:15 2012
 New Revision: 305102
 URL: http://svn.freebsd.org/changeset/ports/305102
 
 Log:
   - Update to 2.0-14 [1]
   - Convert to new Makefile format
   
   PR:		172136 [1]
   Submitted by:	David Naylor <naylor.b.david@gmail.com> (maintainer) [1]
 
 Modified:
   head/math/R-cran-car/Makefile
   head/math/R-cran-car/distinfo
 
 Modified: head/math/R-cran-car/Makefile
 ==============================================================================
 --- head/math/R-cran-car/Makefile	Mon Oct  1 09:46:10 2012	(r305101)
 +++ head/math/R-cran-car/Makefile	Mon Oct  1 09:51:15 2012	(r305102)
 @@ -1,13 +1,8 @@
 -# New ports collection makefile for:	car
 -# Date created:		13 April 2009
 -# Whom:			David Naylor <naylor.b.david@gmail.com>
 -#
 +# Created by: David Naylor <naylor.b.david@gmail.com>
  # $FreeBSD$
 -#
  
  PORTNAME=	car
 -DISTVERSION=	2.0-12
 -PORTREVISION=	2
 +DISTVERSION=	2.0-14
  CATEGORIES=	math
  DISTNAME=	${PORTNAME}_${DISTVERSION}
  
 @@ -16,7 +11,7 @@ COMMENT=	Companion to Applied Regression
  
  LICENSE=	GPLv2
  
 -USE_R_MOD=	yes
 +USE_R_MOD=		yes
  R_MOD_AUTOPLIST=	yes
  
  .include <bsd.port.mk>
 
 Modified: head/math/R-cran-car/distinfo
 ==============================================================================
 --- head/math/R-cran-car/distinfo	Mon Oct  1 09:46:10 2012	(r305101)
 +++ head/math/R-cran-car/distinfo	Mon Oct  1 09:51:15 2012	(r305102)
 @@ -1,2 +1,2 @@
 -SHA256 (car_2.0-12.tar.gz) = b8f1f1dda6a66d6882dff06cece1b71089c922684b3103d89cd3ae44b0c595a5
 -SIZE (car_2.0-12.tar.gz) = 319291
 +SHA256 (car_2.0-14.tar.gz) = cfddd7a6cc211281b01667ca491d0fafc95936bdb49b466e721cb777b3747319
 +SIZE (car_2.0-14.tar.gz) = 330019
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>Unformatted:
