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Date: Sat, 25 Aug 2012 10:02:15 GMT
From: Oliver Hartmann <ohartman@zedat.fu-berlin.de>
To: freebsd-gnats-submit@FreeBSD.org
Subject: science/isis3: New port: USGS ISIS3 planetary mapping tool
X-Send-Pr-Version: www-3.1
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>Number:         171019
>Category:       ports
>Synopsis:       [new port] science/isis3: USGS ISIS3 planetary mapping tool
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          closed
>Quarter:        
>Keywords:       
>Date-Required:  
>Class:          change-request
>Submitter-Id:   current-users
>Arrival-Date:   Sat Aug 25 10:10:25 UTC 2012
>Closed-Date:    Wed Nov 20 16:06:27 UTC 2013
>Last-Modified:  Wed Nov 20 16:06:27 UTC 2013
>Originator:     Oliver Hartmann
>Release:        FreeBSD 10.0-CURRENT/amd64
>Organization:
FU Berlin
>Environment:
>Description:
For planetary sciences, planetary mapping and GIS-related tasks, the USGS provides a large software package called ISIS3.

ISIS3 is spread via rsync by the USGS around the scientific community and it is only made available for Linux flavours and OS X.

We use ISIS3 now for a couple of years also on the FreeBSD platform, FBSD 9.1-PRE and FreeBSD 10.0-CURRENT, to name the systems we run it on.

Since some licensing restrictions and unavailability of commercial libraries, provided by the USGS in the folder 3rdParty, the FreeBSD version is not "complete" and might not provide the full functionality, but in our case, we could work with it as expected.

I never came over (time constraints!) an issue: ISIS3 by default needs a lot of prerequisite QT4 stuff which could be possibly easily and conveniently installed by some "magic" USE_QT4= XXX XXX tags in the Makefile. An experienced maintainer or port GURU should have a look at that. I can build the port on my boxes, but I installed many ports out of the QT4 repository by trial and fail the very first time, so I can not guarantee completeness and due to time constraints I have no sandbox/jail or a clean new box for performing the installation "naked".

But anyway, I hope there is a little interest in the FreeBSD community for this piece of software for planetary science.

I put the port into category "science/isis3", but I think it also could be placed in a more GIS-fashioned category like GRASS or QGIS.

Since the USGS has fixed many problems regarding more modern compilers since their release 3.4.0, the installation is now much more convenient and doesn't need loads of patches I had to provide earlier. 

There is a pitfall: USGS does not provide any git/cvs/svn/http or ftp service to provide interested people with the sources. There is only a very clumsy, ancient and time consuming "rsync" way, I put that in the Makefile's comment. I do not know whether the FreeBSD people can maintain a tar-archive to be fetched when building the port. I do it that way: 

going ahead with the clumsy rsync. This also fetches the unnecessary Linux binaries. Then I delete the contents of the folder 3rdParty, bin, libs, includes and docs since they get recreated when building the port (I'm not sure about the docs, but since there is an xerces-c 3.0 issue on FreeBSD, I avoid installing the docs). The pure sources are then roughly 300MB.

For work, one also need the data. Since the USGS data are provided and updated on a daily/weekly basis, the user/scientist/administrator has to provide them and install/set the proper environment variables. Fetching via "rsync" updated kernels is done on a daily at our facility. "kernel" ins NAIF/USGS terminology is a data-base similar set of parameters and coordinates for orientation data in space, necessary for the proper coordinate referencing of images taken by a spacecraft (like the HRSC imaging camera of MarsExpress we are working on or the more modern ISS-System on Cassini at Saturn, we are also working on). Those "kernel" are crucial for the work with geo-referenced data (in space they are referenced towards a celestial reference system). I didn't provide a "port" for easy to install those things, since I'm not familiar with how to provide a fetch-based port my morphing from rsync to something else.

Well ... I hope someone can use the port and it would be nice having more planetary scientists "draged" into use of FreeBSD. I'm the only one I know about and I'm not literaly using the provided port, I'm maintaing a bunch of servers running this stuff on.

A prerequisite of port ISIS3 is the port astro/cspice and its shared library (which is not build automatically in the original sources), I provided also prior to this application/submission.

Regards,

O. Hartmann
>How-To-Repeat:

>Fix:
Creating the tarball the way I do (assuming you're in your home and have network and a bit of free space (~ 1GB) and follow roughly the installation description provided by the USGS, at http://isis.astrogeology.usgs.gov/documents/InstallGuide/index.html.

I usually go for the Ubuntu-stuff. The provided software shouldn't differ in the sources, but the binaries. Since we dump the binaries, it doens't matter what we reel in ...

mkdir isis3
cd isis3
rsync -azv --delete --partial\ isisdist.astrogeology.usgs.gov::x86-64_linux_UBUNTU/isis .
#(this creates a folder called isis)
mv isis isis-3.4.0
cd isis-3.4.0
rm -r 3rdParty/lib 3rdParty/plugins
rm -r doc lib bin inc
cd ../
tar cjvf isis-3.4.0.tar.bz2 isis-3.4.0




Patch attached with submission follows:

# This is a shell archive.  Save it in a file, remove anything before
# this line, and then unpack it by entering "sh file".  Note, it may
# create directories; files and directories will be owned by you and
# have default permissions.
#
# This archive contains:
#
#	isis3
#	isis3/files
#	isis3/files/patch-make-isismake.apps
#	isis3/files/patch-make-isismake.macros
#	isis3/files/patch-src-docsys-Makefile
#	isis3/files/patch-src-base-objs-Affine-Affine.cpp
#	isis3/files/patch-src-base-objs-PrincipalComponentAnalysis-PrincipalComponentAnalysis.cpp
#	isis3/files/patch-src-control-obj-BundleAdjust-BundleAdjust.h
#	isis3/files/patch-src-base-objs-ForstnerOpwerator-ForstnerOperator.cpp
#	isis3/files/patch-Makefile
#	isis3/files/patch-src-qisis-objs-RubberBandTool-RubberBandTool.cpp
#	isis3/files/config.freebsd
#	isis3/files/patch-src-base-apps-equalizer-equalizer.cpp
#	isis3/files/patch-src-base-objs-LeastSquares-LeastSquares.cpp
#	isis3/files/patch-src-base-objs-Matrix-Matrix.cpp
#	isis3/files/patch-config-Makefile
#	isis3/distinfo
#	isis3/pkg-descr
#	isis3/pkg-plist
#	isis3/Makefile
#
echo c - isis3
mkdir -p isis3 > /dev/null 2>&1
echo c - isis3/files
mkdir -p isis3/files > /dev/null 2>&1
echo x - isis3/files/patch-make-isismake.apps
sed 's/^X//' >isis3/files/patch-make-isismake.apps << 'a0f1dcc88aeed93c6d064020ddb5209c'
X--- make/isismake.apps.orig	2011-08-25 17:33:46.000000000 +0200
X+++ make/isismake.apps	2012-02-03 01:21:09.000000000 +0100
X@@ -76,12 +76,12 @@
X 	$(CXX) $(ALLLIBDIRS) $(ISISLDFLAGS) $(ISISLDRPATH) -o $@ $(OBJS) $(ALLLIBS)
X 
X .cpp.o: qtmoc
X-	$(CXX) $(ALLINCDIRS) $(ISISCPPFLAGS) $(CPPFLAGS) -c -o $@ $?
X+	$(CXX) $(ALLINCDIRS) $(ISISCPPFLAGS) -c -o $@ $?
X 
X .c.o :
X-	$(CC) $(ALLINCDIRS) $(ISISCFLAGS) $(CFLAGS) -c -o $@ $?
X+	$(CC) $(ALLINCDIRS) $(ISISCFLAGS) -c -o $@ $?
X 
X-.cc.o: 
X+.cc.o:
X 	$(CXX) $(ALLINCDIRS) $(ISISCPPFLAGS) -c -o $@ $?
X 
X .xml.html :
a0f1dcc88aeed93c6d064020ddb5209c
echo x - isis3/files/patch-make-isismake.macros
sed 's/^X//' >isis3/files/patch-make-isismake.macros << '2308e02393c2e50b7ff94cfd4c877f29'
X--- make/isismake.macros.orig	2011-10-05 18:52:56.000000000 +0200
X+++ make/isismake.macros	2012-02-04 11:34:47.000000000 +0100
X@@ -22,6 +22,10 @@
X     HOST_PROC = unknown
X endif
X 
X+ifeq ($(HOST_ARCH),FreeBSD)
X+  include $(ISISROOT)/make/config.freebsd
X+endif
X+
X ifeq ($(HOST_ARCH),SunOS)
X   include $(ISISROOT)/make/config.solaris
X endif
X@@ -41,21 +45,22 @@
X #---------------------------------------------------------------------------
X #  Set up some basic commands
X #---------------------------------------------------------------------------
X-CXX            ?= g++
X-CC             ?= gcc
X-LDSHARED       ?= $(CXX)
X+CXX            ?= $(CXX)
X+CC             ?= $(CC)
X+CPP            ?= $(CPP)
X+LDSHARED       ?= $(CXX) -Wl,-E -shared
X MOC            ?= moc
X PROTOC         ?= protoc
X UIC            ?= uic
X-XALAN          ?= Xalan
X-LS             ?= /bin/ls
X-RM             ?= /bin/rm -f
X-CP             ?= /bin/cp
X+XALAN          ?= xalan-j -FLAVOR d2d=DOM
X+LS             ?= ls
X+RM             ?= rm -f
X+CP             ?= cp
X LN             ?= ln -s
X-CAT            ?= /bin/cat
X-RANLIB         ?= /usr/bin/true
X+CAT            ?= cat
X+RANLIB         ?= ranlib
X MACHINE        ?= uname
X-DIFF           ?= /usr/bin/diff
X+DIFF           ?= diff
X GREP           ?= grep
X EVAL           ?= eval
X WHICH          ?= which
X@@ -65,10 +70,10 @@
X MV             ?= mv
X RSYNC          ?= rsync
X SED            ?= sed
X-DATE           ?= /bin/date
X-PRINTF         ?= /usr/bin/printf
X-ECHO           ?= /bin/echo
X-CUT            ?= /usr/bin/cut
X+DATE           ?= date
X+PRINTF         ?= printf
X+ECHO           ?= echo
X+CUT            ?= cut
X PATCHELF       ?= patchelf
X 
X #  Third party library/plugin install tool
X@@ -83,8 +88,10 @@
X 
X ifeq ($(HOST_ARCH),SunOS)
X   AWK         ?= /usr/xpg4/bin/awk
X+else ifeq ($(HOST_ARCH),FreeBSD)
X+  AWK         ?= gawk
X else
X-  AWK         ?= awk
X+  AWK	      ?= awk
X endif
X 
X ifeq ($(HOST_ARCH),Darwin)
X@@ -93,16 +100,19 @@
X   LATEX       ?= /opt/local/bin/latex
X else
X   DOXYGEN     ?= doxygen
X+  #DOT_PATH    ?= /usr/local/bin
X   LATEX       ?= latex
X endif
X 
X-# Set up Xalan's command-line option names. Some version of Xalan use different
X-# option names (e.g. Ubuntu's and Debian's Xalan).
X-XALAN_VALIDATE_OPTION := -v
X-XALAN_OUTFILE_OPTION := -o
X-XALAN_PARAM_OPTION := -p
X-XALAN_INFILE_OPTION :=
X-XALAN_XSL_OPTION :=
X+#XALAN_VALIDATE_OPTION :=
X+XALAN_OUTFILE_OPTION := -OUT
X+XALAN_PARAM_OPTION := -PARAM
X+XALAN_INFILE_OPTION := -IN
X+XALAN_XSL_OPTION := -XSL
X+
X+ifeq ($(HOST_ARCH),FreeBSD)
X+  HOST_OS := FreeBSD
X+endif
X 
X # set up HOST_OS
X testFile = $(wildcard /etc/SuSE-release)
2308e02393c2e50b7ff94cfd4c877f29
echo x - isis3/files/patch-src-docsys-Makefile
sed 's/^X//' >isis3/files/patch-src-docsys-Makefile << 'bdca3f5d04f1158f9bff0bf72a52f810'
X--- src/docsys/Makefile.orig	2012-02-04 12:27:12.000000000 +0100
X+++ src/docsys/Makefile	2012-02-04 12:40:35.000000000 +0100
X@@ -76,7 +76,7 @@
X 
X 	echo "        [home page]"
X 	#rsync -lHptr --delete --rsh=ssh --cvs-exclude *.html $(DOCDIR)/
X-	$(XALAN) $(XALAN_VALIDATE_OPTION) $(XALAN_PARAM_OPTION) menuPath "'./'" $(XALAN_OUTFILE_OPTION) $(DOCDIR)/index.html $(XALAN_INFILE_OPTION) build/homepage.xml $(XALAN_XSL_OPTION) build/main.xsl
X+	#$(XALAN) $(XALAN_VALIDATE_OPTION) $(XALAN_PARAM_OPTION) menuPath "'./'" $(XALAN_OUTFILE_OPTION) $(DOCDIR)/index.html $(XALAN_INFILE_OPTION) build/homepage.xml $(XALAN_XSL_OPTION) build/main.xsl
X 
X 	echo "      Finished Updating Directories"
X 
bdca3f5d04f1158f9bff0bf72a52f810
echo x - isis3/files/patch-src-base-objs-Affine-Affine.cpp
sed 's/^X//' >isis3/files/patch-src-base-objs-Affine-Affine.cpp << '43277d2afbc00e477b4d0e5e08bcbee3'
X--- src/base/objs/Affine/Affine.cpp.orig	2010-11-19 22:20:35.168686503 +0100
X+++ src/base/objs/Affine/Affine.cpp	2010-11-19 22:20:35.169688574 +0100
X@@ -23,7 +23,12 @@
X #include <vector>
X #include <iostream>
X #include <string>
X+
X+#ifdef __FreeBSD__ 
X+#include "tnt/jama_svd.h"
X+#else
X #include "jama/jama_svd.h"
X+#endif
X 
X #include "Affine.h"
X #include "PolynomialBivariate.h"
43277d2afbc00e477b4d0e5e08bcbee3
echo x - isis3/files/patch-src-base-objs-PrincipalComponentAnalysis-PrincipalComponentAnalysis.cpp
sed 's/^X//' >isis3/files/patch-src-base-objs-PrincipalComponentAnalysis-PrincipalComponentAnalysis.cpp << 'f016f33a7b428c6558ae9fe3a5f04a15'
X--- src/base/objs/PrincipalComponentAnalysis/PrincipalComponentAnalysis.cpp.orig	2010-11-19 22:20:44.224827970 +0100
X+++ src/base/objs/PrincipalComponentAnalysis/PrincipalComponentAnalysis.cpp	2010-11-19 22:20:44.224827970 +0100
X@@ -21,8 +21,14 @@
X  */
X 
X #include "PrincipalComponentAnalysis.h"
X+
X+#ifdef __FreeBSD__ 
X+#include "tnt/jama_eig.h"
X+#include "tnt/jama_lu.h"
X+#else
X #include "jama/jama_eig.h"
X #include "jama/jama_lu.h"
X+#endif
X 
X using namespace std;
X 
f016f33a7b428c6558ae9fe3a5f04a15
echo x - isis3/files/patch-src-control-obj-BundleAdjust-BundleAdjust.h
sed 's/^X//' >isis3/files/patch-src-control-obj-BundleAdjust-BundleAdjust.h << 'ecb128cbca3d8dfc11a935c920814e35'
X--- ./src/control/objs/BundleAdjust/BundleAdjust.h.orig	2011-11-11 20:55:31.000000000 +0100
X+++ ./src/control/objs/BundleAdjust/BundleAdjust.h	2011-11-11 20:56:35.000000000 +0100
X@@ -113,8 +113,13 @@
X #include "ControlMeasure.h"
X #include "SparseBlockMatrix.h"
X 
X+#ifdef __FreeBSD__
X+#include <suitesparse/cholmod.h>
X+#include <suitesparse/UFconfig.h>
X+#else
X #include <CHOLMOD/cholmod.h>
X #include <CHOLMOD/UFconfig.h>
X+#endif
X 
X template< typename T > class QList;
X template< typename A, typename B > class QMap;
ecb128cbca3d8dfc11a935c920814e35
echo x - isis3/files/patch-src-base-objs-ForstnerOpwerator-ForstnerOperator.cpp
sed 's/^X//' >isis3/files/patch-src-base-objs-ForstnerOpwerator-ForstnerOperator.cpp << '051779319e4af9201446b7f725e53090'
X--- ./src/base/objs/ForstnerOperator/ForstnerOperator.cpp.orig	2010-11-05 22:39:33.540435075 +0100
X+++ ./src/base/objs/ForstnerOperator/ForstnerOperator.cpp	2010-11-05 22:41:25.389989047 +0100
X@@ -2,7 +2,12 @@
X #include "Chip.h"
X #include "FourierTransform.h"
X #include "tnt/tnt_array2d.h"
X+
X+#ifdef	__FreeBSD__
X+#include "tnt/jama_lu.h"
X+#else
X #include "jama/jama_lu.h"
X+#endif
X #include <complex>
X 
X namespace Isis {
051779319e4af9201446b7f725e53090
echo x - isis3/files/patch-Makefile
sed 's/^X//' >isis3/files/patch-Makefile << '6f7335794407f704cdf8deb794637188'
X--- Makefile.orig	2012-06-25 23:08:55.000000000 +0200
X+++ Makefile	2012-06-25 23:10:05.000000000 +0200
X@@ -37,7 +37,7 @@
X # After the API is created then the applications can be individually built
X # and installed. Finally create the web documentation for the entire system.
X #----------------------------------------------------------------------------
X-all: config incs thirdParty api apps docs
X+all: config incs api apps docs
X 
X #----------------------------------------------------------------------------
X # Target = config
6f7335794407f704cdf8deb794637188
echo x - isis3/files/patch-src-qisis-objs-RubberBandTool-RubberBandTool.cpp
sed 's/^X//' >isis3/files/patch-src-qisis-objs-RubberBandTool-RubberBandTool.cpp << '67f64b0cff17e95944f63991dfb9fa9a'
X--- src/qisis/objs/RubberBandTool/RubberBandTool.cpp.orig	2011-09-20 21:42:25.000000000 +0200
X+++ src/qisis/objs/RubberBandTool/RubberBandTool.cpp	2012-01-30 22:43:51.000000000 +0100
X@@ -2,6 +2,10 @@
X 
X #include <float.h>
X 
X+#ifdef __FreeBSD__
X+#include <math.h>
X+#endif
X+
X #include <QList>
X #include <QMessageBox>
X #include <QPainter>
67f64b0cff17e95944f63991dfb9fa9a
echo x - isis3/files/config.freebsd
sed 's/^X//' >isis3/files/config.freebsd << 'ef5ccb07cd7b4adb9d25495aa2436e7a'
X#---------------------------------------------------------------------------
X# Compiler options, derived from config.linux-x86_64
X# CPP flags are CXX flags, but the USGS sources use CPP.
X# If used within the ports repository framework, $(CXXFLAGS)
X# should already be set properly.
X#
X# O. Hartmann (2010, 2011, 2012)
X#
X# ISIS 3.4.0
X#---------------------------------------------------------------------------
X
XISISCPPFLAGS  	=  $(CPPFLAGS)
XISISCPPFLAGS  	+=  $(QTCPPFLAGS)
XISISCPPFLAGS 	+= -Wall
XISISCPPFLAGS 	+= -fpic
XISISCPPFLAGS 	+= -DISIS_LITTLE_ENDIAN=1
XISISCPPFLAGS 	+= -DGMM_USES_SUPERLU
XISISCPPFLAGS 	+= -m64
XISISCPPFLAGS 	+= -pthread
X
X
X# Enable (1) or disable (0) usage of KAKADU
X# Kakadu is a licens protected library!
XISISCPPFLAGS 	+= -DENABLEJP2K=0
X
Xifeq ($(findstring DEBUG, $(MODE)),DEBUG)
X  ISISCPPFLAGS 	+= -g 
X  ISISCPPFLAGS 	+= -O0
X  ISISCPPFLAGS 	+= -DDEBUG
X  ISISCPPFLAGS 	+= -W
X  ifeq ($(findstring CWD, $(MODE)),CWD)
X    ISISCPPFLAGS 	+= -DCWDEBUG -DLIBCWD_THREAD_SAFE -D_REENTRANT
X    ifeq (,$(findstring MEMCHECK, $(MODE)))
X      ISISCPPFLAGS 	+= -DNOMEMCHECK
X    endif
X  endif
Xelse
X  ISISCPPFLAGS 	+= -O0 -g
Xendif
X
XISISCFLAGS 	= $(CFLAGS) $(CXXFLAGS)
X
X#---------------------------------------------------------------------------
X# Linker options
X# Runtime paths for FreeBSD are rooted to $ISISROOT.
X# $(LDFLAGS) should be already set with proper linker options
X# by the ports repository framework. Not properly checked yet.
X#
X#---------------------------------------------------------------------------
XRANLIB          = /usr/bin/ranlib
XSHAREDLIBEXT    = so
X
XISISLDFLAGS 	= $(LDFLAGS)
XISISLDFLAGS 	+= -L. -L.. -L/usr/local/lib
X#
XISISLDRPATH 	+= -Wl,-rpath,$(ISISROOT)/lib
X#
XISISSYSLIBS 	+= -lz -pthread
X#
XISISSTATIC  	= -Wl,-Bstatic
XISISDYNAMIC 	= -Wl,-Bdynamic
X
Xifeq ($(findstring DEBUG, $(MODE)),DEBUG)
X  ifeq ($(findstring CWD, $(MODE)),CWD)
X    ISISSYSLIBS += -lcwd_r -pthread
X  endif
Xendif
X
X#---------------------------------------------------------------------------
X# Shared library options
X#---------------------------------------------------------------------------
X#ISISSHAREDFLAGS = $(ISISLDFLAGS) -D_THREAD_SAFE -pthread  -shared -fpic
XISISSHAREDFLAGS = $(ISISLDFLAGS) -shared
XISISSHAREDON    = -Wl,-whole-archive 
XISISSHAREDOFF   = -Wl,-no-whole-archive
XISISARFLAGS     =
X
X#---------------------------------------------------------------------------
X# Set up local library designations
X#---------------------------------------------------------------------------
XISIS3LOCAL  	?= $(LOCALBASE)
XISIS3SYSINC 	?= $(ISIS3LOCAL)/include
XISIS3SYSLIB 	?= $(ISIS3LOCAL)/lib
XISIS3CONTRIB	?= 
X
X#---------------------------------------------------------------------------
X# Set up for cwd
X#---------------------------------------------------------------------------
XCWDINCDIR 	= -D_THREAD_SAFE -pthread -I$(ISIS3LOCAL)/include/libcwd
XCWDLIBDIR 	= -L$(ISIS3LOCAL)/lib
XCWDLIB    	= -lcwd
X
X
X#---------------------------------------------------------------------------
X# Set up for Qt on FreeBSD platform.
X# Make environment and settings of CPPFLAGS are done via the ports
X# framework.
X#---------------------------------------------------------------------------
XQTFLAGS 	+= $(CPPFLAGS) -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED
X#
XQTDIR	  	= $(QT_PREFIX)
X#
X#QTINCDIR 	= -I$(QMAKESPEC)
X#QTINCDIR 	+= -I$(ISIS3LOCAL)/share/qt4/mkspecs/default
X#QTINCDIR 	+= -I$(QT_INCDIR)/Qt
X#QTINCDIR 	+= -I$(QT_INCDIR)/QtCore
X#QTINCDIR 	+= -I$(QT_INCDIR)/QtAssistant
X#QTINCDIR 	+= -I$(QT_INCDIR)/QtGui
X#QTINCDIR 	+= -I$(QT_INCDIR)/QtNetwork
X#QTINCDIR 	+= -I$(QT_INCDIR)/QtScript
X#QTINCDIR 	+= -I$(QT_INCDIR)/QtScriptTools
X#QTINCDIR 	+= -I$(QT_INCDIR)/QtSql
X#QTINCDIR 	+= -I$(QT_INCDIR)/QtSvg
X#QTINCDIR 	+= -I$(QT_INCDIR)/QtWebKit
X#QTINCDIR 	+= -I$(QT_INCDIR)/QtXml
X#QTINCDIR 	+= -I$(QT_INCDIR)/QtXmlPatterns
X#
X#
XQTINCDIR 	+= -I$(ISIS3LOCAL)/share/qt4/mkspecs/default
XQTINCDIR 	+= -I$(ISIS3LOCAL)/include/qt4
XQTINCDIR 	+= -I$(ISIS3LOCAL)/include/qt4/Qt
XQTINCDIR 	+= -I$(ISIS3LOCAL)/include/qt4/QtCore
XQTINCDIR 	+= -I$(ISIS3LOCAL)/include/qt4/QtAssistant
XQTINCDIR 	+= -I$(ISIS3LOCAL)/include/qt4/QtGui
XQTINCDIR 	+= -I$(ISIS3LOCAL)/include/qt4/QtNetwork
XQTINCDIR 	+= -I$(ISIS3LOCAL)/include/qt4/QtOpenGL
XQTINCDIR 	+= -I$(ISIS3LOCAL)/include/qt4/QtScript
XQTINCDIR 	+= -I$(ISIS3LOCAL)/include/qt4/QtScriptTools
XQTINCDIR 	+= -I$(ISIS3LOCAL)/include/qt4/QtSql
XQTINCDIR 	+= -I$(ISIS3LOCAL)/include/qt4/QtSvg
XQTINCDIR 	+= -I$(ISIS3LOCAL)/include/qt4/QtTest
XQTINCDIR 	+= -I$(ISIS3LOCAL)/include/qt4/QtWebKit
XQTINCDIR 	+= -I$(ISIS3LOCAL)/include/qt4/QtXml
XQTINCDIR 	+= -I$(ISIS3LOCAL)/include/qt4/QtXmlPatterns
X#
X# Set by toplevel port's Makefile
X#
XQTLIBDIR        	= -L$(ISIS3LOCAL)/lib/qt4
X#QTLIBDIR        	= -L$(QT_LIBDIR)
X#
XQTCOMMONFRAMEWORKS	=
XQTFRAMEWORKS    	=
XQTFRAMEWORKS    	= -lQtXmlPatterns -lQtXml -lQtNetwork -lQtSql -lQtGui -lQtCore -lQtSvg -lQtTest -lQtOpenGL -lQtWebKit
X#
XQTLIB           	= $(QTCFGLIBS) $(QTFRAMEWORKS) $(QTCOMMONFRAMEWORKS)
X#
XQTOPENGL        	= -lOpenGL -lAGL
X#
XISISCPPFLAGS    	+= $(QTFLAGS)
X
X#---------------------------------------------------------------------------
X# Setup Qt4 moc compiler
X#---------------------------------------------------------------------------
XMOC          	= $(ISIS3LOCAL)/bin/moc-qt4
X#MOC          	= $(MOC)
XMOCDEFINES   	+= $(QTFLAGS)
XMOCDEFINES   	+= $(QTINCDIR)
X
X#---------------------------------------------------------------------------
X# Setup Qt4 uic compiler
X#---------------------------------------------------------------------------
X#UIC             = $(UIC)
XUIC             = $(ISIS3LOCAL)/bin/uic-qt4
XUICDEFINES      += $(QTCPPFLAGS)
XUICDEFINES      += $(QTINCDIR)
X
X
X#---------------------------------------------------------------------------
X# Setup Qt4 qmake 
X#---------------------------------------------------------------------------
X#QMAKE		= $(QMAKE)
XQMAKE		= $(ISIS3LOCAL)/bin/qmake-qt4
X
X#---------------------------------------------------------------------------
X# Setup Qt4 rcc compiler
X#---------------------------------------------------------------------------
X#RCC		= $(RCC)
XRCC		= $(ISIS3LOCAL)/bin/rcc
X
X#---------------------------------------------------------------------------
X# Set up for Qwt
X#---------------------------------------------------------------------------
XQWTINCDIR	= -D_THREAD_SAFE -pthread -I$(ISIS3LOCAL)/include/qwt6
XQWTLIBDIR 	= -L$(ISIS3LOCAL)/lib
XQWTLIB    	= -lqwt6
X
X#---------------------------------------------------------------------------
X# Set up for Xerces 
X#---------------------------------------------------------------------------
XXERCESINCDIR 	= `pkg-config --cflags xerces-c`
XXERCESLIBDIR 	= `pkg-config --libs-only-L xerces-c`
XXERCESLIB    	= `pkg-config --libs-only-l xerces-c`
X
X#---------------------------------------------------------------------------
X# Set up for Xalan-c
X# Due to problem with Xerces V2 (Std in FBSD ports) and V3 (needed in ISIS3)
X# Xalan based portions won't compile properly.
X#---------------------------------------------------------------------------
X#XALAN		= $(ISIS3LOCAL)/bin/Xalan
X
X#---------------------------------------------------------------------------
X# Set up for Tiff
X#---------------------------------------------------------------------------
XTIFFINCDIR = -I$(ISIS3LOCAL)/include
XTIFFLIBDIR = -L$(ISIS3LOCAL)/lib
XTIFFLIB    = -ltiff
X
X#---------------------------------------------------------------------------
X# Set up for naif
X# This is a FreeBSD specific setting of a specific port
X# not published yet.
X#---------------------------------------------------------------------------
XNAIFINCDIR 	= -I$(ISIS3LOCAL)/include/naif
XNAIFLIBDIR 	= -L$(ISIS3LOCAL)/lib/
XNAIFLIB    	= -lcspice
X
X#---------------------------------------------------------------------------
X# Set up for TNT
X#---------------------------------------------------------------------------
XTNTINCDIR 	= -I$(ISIS3LOCAL)/include/tnt
XTNTLIBDIR 	=
XTNTLIB    	= 
X
X#---------------------------------------------------------------------------
X# Set up for JAMA
X#---------------------------------------------------------------------------
XJAMAINCDIR 	= -I$(ISIS3LOCAL)/include/tnt
XJAMALIBDIR 	=
XJAMALIB    	= 
X
X#---------------------------------------------------------------------------
X# Set up for GEOS
X#---------------------------------------------------------------------------
XGEOSINCDIR 	= -D_THREAD_SAFE -pthread -I$(ISIS3LOCAL)/include/geos
XGEOSLIBDIR 	= -L$(ISIS3LOCAL)/lib
XGEOSLIB    	= -lgeos
X
X#---------------------------------------------------------------------------
X# Set up for the GNU Scientific Library (GSL).  Note that this setup
X# suppports include patterns such as <gsl/gsl_errno.h>.  With this
X# format, any other include spec that points to the general include
X# directory, such as GEOS, will suffice.  Therefore, an explicit
X# include directive is ommitted but provided as an empty reference
X# in cases where it may be located elsewhere.  This also goes for the
X# library reference.
X#---------------------------------------------------------------------------
XGSLINCDIR 	= -D_THREAD_SAFE -pthread -I$(ISIS3LOCAL)/include/gsl
XGSLLIBDIR 	= -L$(ISIS3LOCAL)/lib
XGSLLIB    	= -lgsl -lgslcblas
X
X#---------------------------------------------------------------------------
X# Set up for X11
X#---------------------------------------------------------------------------
XX11INCDIR =
XX11LIBDIR =
XX11LIB    = -lX11
X
X#---------------------------------------------------------------------------
X# Set up for GMM
X#---------------------------------------------------------------------------
XGMMINCDIR 	= -D_THREAD_SAFE -I$(ISIS3LOCAL)/include
XGMMLIBDIR 	=
XGMMLIB    	= 
X
X#---------------------------------------------------------------------------
X# Set up for SuperLU
X#---------------------------------------------------------------------------
XSUPERLUINCDIR 	= -D_THREAD_SAFE -pthread -I$(ISIS3LOCAL)/include/superlu
XSUPERLULIBDIR 	= -L$(ISIS3LOCAL)/lib
XSUPERLULIB    	= -lsuperlu -lblas
X
X#---------------------------------------------------------------------------
X# Set up for Google Protocol Buffers (ProtoBuf)
X#---------------------------------------------------------------------------
XPROTOBUFINCDIR 	= `pkg-config --cflags protobuf`
XPROTOBUFLIBDIR 	= `pkg-config --libs-only-L protobuf`
XPROTOBUFLIB 	= `pkg-config --libs-only-l protobuf`
X
X#---------------------------------------------------------------------------
X# Set up for kakadu
X# The Kakadu library is proprietary. The source files cannot be distributed
X# with ISIS3. If you need to rebuild ISIS3 on your system, then you will
X# need to modify the lines below that pertain to the location of the
X# header files and library on your system. The compilation flag, ENABLEJP2K,
X# should be set to true if you are building with the Kakadu library and
X# you want to use the JPEG2000 specific code in the ISIS3 system. Otherwise,
X# set the ENABLEJP2K flag to false.
X#---------------------------------------------------------------------------
Xifdef	DENABLEJP2K
Xifeq	$( $HOST_ARCH, FreeBSD )
XKAKADUINCDIR	= -I$(ISIS3LOCAL)/include/
XKAKADULIBDIR	= -L$(ISIS3LOCAL)/lib
XKAKADULIB	= -lopenjpeg -llibecwj2
Xelse
XKAKADUINCDIR 	= -I$(ISIS3LOCAL)/include/kakadu/
XKAKADULIBDIR 	= -L$(ISIS3LOCAL)/lib
XKAKADULIB	= -lkdu_a63R
Xendif
Xelse
XKAKADUINCDIR	= -I$(ISIS3LOCAL)/include/kakadu/
XKAKADULIBDIR	= -L$(ISIS3LOCAL)/lib
XKAKADULIB	=
Xendif
X
X#---------------------------------------------------------------------------
X# Set up for BOOST
X#---------------------------------------------------------------------------
XBOOSTINCDIR 	= -D_THREAD_SAFE -pthread -I$(ISIS3LOCAL)/include/boost/
XBOOSTLIBDIR 	= -L$(ISIS3LOCAL)/lib
XBOOSTLIB    	=
X#BOOSTLIB    	= -lboost_date_time -lboost_filesystem -lboost_graph -lboost_math_c99f \
X#              	-lboost_math_c99l -lboost_math_c99 -lboost_math_tr1f -lboost_math_tr1l \
X#              	-lboost_math_tr1 -lboost_prg_exec_monitor -lboost_program_options \
X#              	-lboost_regex -lboost_serialization -lboost_signals -lboost_system \
X#              	-lboost_thread -lboost_unit_test_framework -lboost_wave -lboost_wserialization
X
X#---------------------------------------------------------------------------
X# Set up for Cholmod libraries 
X#---------------------------------------------------------------------------
XCHOLMODINCDIR 	= -D_THREAD_SAFE -pthread -I$(ISIS3LOCAL)/include
XCHOLMODLIBDIR 	= -L$(ISIS3LOCAL)/lib
XCHOLMODLIB    	= -lcholmod -lamd -lcolamd -llapack
ef5ccb07cd7b4adb9d25495aa2436e7a
echo x - isis3/files/patch-src-base-apps-equalizer-equalizer.cpp
sed 's/^X//' >isis3/files/patch-src-base-apps-equalizer-equalizer.cpp << '70972c341f22baadebb1285f3388011b'
X--- src/base/apps/equalizer/equalizer.cpp.orig	2011-11-09 19:16:35.000000000 +0100
X+++ src/base/apps/equalizer/equalizer.cpp	2011-11-09 19:17:22.000000000 +0100
X@@ -2,7 +2,11 @@
X 
X #include <cmath>
X 
X+#ifdef __FreeBSD__
X+#include "tnt/jama_svd.h"
X+#else
X #include "jama/jama_svd.h"
X+#endif
X #include "tnt/tnt_array2d.h"
X 
X #include "CubeAttribute.h"
70972c341f22baadebb1285f3388011b
echo x - isis3/files/patch-src-base-objs-LeastSquares-LeastSquares.cpp
sed 's/^X//' >isis3/files/patch-src-base-objs-LeastSquares-LeastSquares.cpp << '00c53ae950a49487ec911bbc7fca8489'
X--- ./src/base/objs/LeastSquares/LeastSquares.cpp.orig	2011-03-26 23:39:56.000000000 +0100
X+++ ./src/base/objs/LeastSquares/LeastSquares.cpp	2012-01-30 22:39:17.000000000 +0100
X@@ -20,8 +20,13 @@
X  *   http://isis.astrogeology.usgs.gov, and the USGS privacy and disclaimers on
X  *   http://www.usgs.gov/privacy.html.
X  */
X+#if defined(__FreeBSD__)
X+#include "tnt/jama_svd.h"
X+#include "tnt/jama_qr.h"
X+#else
X #include "jama/jama_svd.h"
X #include "jama/jama_qr.h"
X+#endif
X 
X #if !defined(__sun__)
X #include "gmm/gmm_superlu_interface.h"
00c53ae950a49487ec911bbc7fca8489
echo x - isis3/files/patch-src-base-objs-Matrix-Matrix.cpp
sed 's/^X//' >isis3/files/patch-src-base-objs-Matrix-Matrix.cpp << '7c80a8b7ea27e5a7ce0fbce6275c8bf0'
X--- src/base/objs/Matrix/Matrix.cpp.orig	2010-07-03 03:34:37.000000000 +0200
X+++ src/base/objs/Matrix/Matrix.cpp	2012-01-30 22:57:07.000000000 +0100
X@@ -23,9 +23,16 @@
X #include <vector>
X #include <iostream>
X #include <string>
X+
X+#ifdef __FreeBSD__
X+#include "tnt/jama_svd.h"
X+#include "tnt/jama_eig.h"
X+#include "tnt/jama_lu.h"
X+#else
X #include "jama/jama_svd.h"
X #include "jama/jama_eig.h"
X #include "jama/jama_lu.h"
X+#endif
X 
X #include "Matrix.h"
X #include "iException.h"
7c80a8b7ea27e5a7ce0fbce6275c8bf0
echo x - isis3/files/patch-config-Makefile
sed 's/^X//' >isis3/files/patch-config-Makefile << 'b4b92d5a202b51a7789eb31e93d892d8'
X--- config/Makefile.orig	2012-06-16 18:04:26.000000000 +0200
X+++ config/Makefile	2012-06-16 18:15:23.000000000 +0200
X@@ -8,18 +8,19 @@
X 
X ####### Compiler, tools and options
X 
X-CC            = gcc
X-CXX           = g++
X+CC            ?= clang
X+CXX           ?= clang++
X DEFINES       = -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED
X-CFLAGS        = -m64 -pipe -O2 -Wall -W -D_REENTRANT $(DEFINES)
X-CXXFLAGS      = -m64 -pipe -O2 -Wall -W -D_REENTRANT $(DEFINES)
X-INCPATH       = -I../../../local/v002/mkspecs/default -I. -I../../../local/v002/include/qt/qt4.8.0/QtCore -I../../../local/v002/include/qt/qt4.8.0/QtGui -I../../../local/v002/include/qt/qt4.8.0 -I.
X-LINK          = g++
X-LFLAGS        = -m64 -Wl,-O1 -Wl,-rpath,/usgs/pkgs/local/v002/lib
X-LIBS          = $(SUBLIBS)  -L/usgs/pkgs/local/v002//lib -lQtGui -L/usgs/pkgs/local/v002//lib -L/usr/X11R6/lib64 -lQtCore -lpthread 
X+CFLAGS        += -Wall -W -D_REENTRANT $(DEFINES)
X+CXXFLAGS      += -Wall -W -D_REENTRANT $(DEFINES)
X+#INCPATH       = -I../../../local/v002/mkspecs/default -I. -I../../../local/v002/include/qt/qt4.8.0/QtCore -I../../../local/v002/include/qt/qt4.8.0/QtGui -I../../../local/v002/include/qt/qt4.8.0 -I.
X+INCPATH       ?= ${CPPFLAGS} -I.
X+LINK          ?= clang++
X+LFLAGS        = ${LDFLAGS}
X+LIBS          = $(SUBLIBS)  -lQtGui -lQtCore -lpthread 
X AR            = ar cqs
X RANLIB        = 
X-QMAKE         = /usgs/pkgs/local/v002/bin/qmake
X+QMAKE         = qmake-qt4
X TAR           = tar -cf
X COMPRESS      = gzip -9f
X COPY          = cp -f
X@@ -45,31 +46,7 @@
X 
X SOURCES       =  
X OBJECTS       = 
X-DIST          = ../../../local/v002/mkspecs/common/unix.conf \
X-		../../../local/v002/mkspecs/common/linux.conf \
X-		../../../local/v002/mkspecs/common/gcc-base.conf \
X-		../../../local/v002/mkspecs/common/gcc-base-unix.conf \
X-		../../../local/v002/mkspecs/common/g++-base.conf \
X-		../../../local/v002/mkspecs/common/g++-unix.conf \
X-		../../../local/v002/mkspecs/qconfig.pri \
X-		../../../local/v002/mkspecs/modules/qt_webkit_version.pri \
X-		../../../local/v002/mkspecs/features/qt_functions.prf \
X-		../../../local/v002/mkspecs/features/qt_config.prf \
X-		../../../local/v002/mkspecs/features/exclusive_builds.prf \
X-		../../../local/v002/mkspecs/features/default_pre.prf \
X-		../../../local/v002/mkspecs/features/release.prf \
X-		../../../local/v002/mkspecs/features/default_post.prf \
X-		../../../local/v002/mkspecs/features/unix/gdb_dwarf_index.prf \
X-		../../../local/v002/mkspecs/features/warn_on.prf \
X-		../../../local/v002/mkspecs/features/qt.prf \
X-		../../../local/v002/mkspecs/features/unix/thread.prf \
X-		../../../local/v002/mkspecs/features/moc.prf \
X-		../../../local/v002/mkspecs/features/resources.prf \
X-		../../../local/v002/mkspecs/features/uic.prf \
X-		../../../local/v002/mkspecs/features/yacc.prf \
X-		../../../local/v002/mkspecs/features/lex.prf \
X-		../../../local/v002/mkspecs/features/include_source_dir.prf \
X-		config.pro
X+DIST          = config.pro
X QMAKE_TARGET  = isis.conf
X DESTDIR       = $(ISISROOT)/make/
X TARGET        = $(ISISROOT)/make/isis.conf
X@@ -102,59 +79,10 @@
X 	@$(CHK_DIR_EXISTS) $(ISISROOT)/make/ || $(MKDIR) $(ISISROOT)/make/ 
X 	$(LINK) $(LFLAGS) -o $(TARGET) $(OBJECTS) $(OBJCOMP) $(LIBS)
X 
X-Makefile: config.pro  ../../../local/v002/mkspecs/default/qmake.conf ../../../local/v002/mkspecs/common/unix.conf \
X-		../../../local/v002/mkspecs/common/linux.conf \
X-		../../../local/v002/mkspecs/common/gcc-base.conf \
X-		../../../local/v002/mkspecs/common/gcc-base-unix.conf \
X-		../../../local/v002/mkspecs/common/g++-base.conf \
X-		../../../local/v002/mkspecs/common/g++-unix.conf \
X-		../../../local/v002/mkspecs/qconfig.pri \
X-		../../../local/v002/mkspecs/modules/qt_webkit_version.pri \
X-		../../../local/v002/mkspecs/features/qt_functions.prf \
X-		../../../local/v002/mkspecs/features/qt_config.prf \
X-		../../../local/v002/mkspecs/features/exclusive_builds.prf \
X-		../../../local/v002/mkspecs/features/default_pre.prf \
X-		../../../local/v002/mkspecs/features/release.prf \
X-		../../../local/v002/mkspecs/features/default_post.prf \
X-		../../../local/v002/mkspecs/features/unix/gdb_dwarf_index.prf \
X-		../../../local/v002/mkspecs/features/warn_on.prf \
X-		../../../local/v002/mkspecs/features/qt.prf \
X-		../../../local/v002/mkspecs/features/unix/thread.prf \
X-		../../../local/v002/mkspecs/features/moc.prf \
X-		../../../local/v002/mkspecs/features/resources.prf \
X-		../../../local/v002/mkspecs/features/uic.prf \
X-		../../../local/v002/mkspecs/features/yacc.prf \
X-		../../../local/v002/mkspecs/features/lex.prf \
X-		../../../local/v002/mkspecs/features/include_source_dir.prf \
X-		/usgs/pkgs/local/v002/lib/libQtGui.prl \
X-		/usgs/pkgs/local/v002/lib/libQtCore.prl
X+Makefile: config.pro
X+		
X 	$(QMAKE) -o Makefile config.pro
X-../../../local/v002/mkspecs/common/unix.conf:
X-../../../local/v002/mkspecs/common/linux.conf:
X-../../../local/v002/mkspecs/common/gcc-base.conf:
X-../../../local/v002/mkspecs/common/gcc-base-unix.conf:
X-../../../local/v002/mkspecs/common/g++-base.conf:
X-../../../local/v002/mkspecs/common/g++-unix.conf:
X-../../../local/v002/mkspecs/qconfig.pri:
X-../../../local/v002/mkspecs/modules/qt_webkit_version.pri:
X-../../../local/v002/mkspecs/features/qt_functions.prf:
X-../../../local/v002/mkspecs/features/qt_config.prf:
X-../../../local/v002/mkspecs/features/exclusive_builds.prf:
X-../../../local/v002/mkspecs/features/default_pre.prf:
X-../../../local/v002/mkspecs/features/release.prf:
X-../../../local/v002/mkspecs/features/default_post.prf:
X-../../../local/v002/mkspecs/features/unix/gdb_dwarf_index.prf:
X-../../../local/v002/mkspecs/features/warn_on.prf:
X-../../../local/v002/mkspecs/features/qt.prf:
X-../../../local/v002/mkspecs/features/unix/thread.prf:
X-../../../local/v002/mkspecs/features/moc.prf:
X-../../../local/v002/mkspecs/features/resources.prf:
X-../../../local/v002/mkspecs/features/uic.prf:
X-../../../local/v002/mkspecs/features/yacc.prf:
X-../../../local/v002/mkspecs/features/lex.prf:
X-../../../local/v002/mkspecs/features/include_source_dir.prf:
X-/usgs/pkgs/local/v002/lib/libQtGui.prl:
X-/usgs/pkgs/local/v002/lib/libQtCore.prl:
X+
X qmake:  FORCE
X 	@$(QMAKE) -o Makefile config.pro
X 
b4b92d5a202b51a7789eb31e93d892d8
echo x - isis3/distinfo
sed 's/^X//' >isis3/distinfo << 'a088da048508577e5eeb49b32d1c8af5'
XSHA256 (isis-3.4.0.tar.gz) = f30523aef1e70fd0c6149ccacac2a609898333b835508c71470ff297e85894a2
XSIZE (isis-3.4.0.tar.gz) = 181188173
a088da048508577e5eeb49b32d1c8af5
echo x - isis3/pkg-descr
sed 's/^X//' >isis3/pkg-descr << 'a55f3cf3fe7966bde184bb2a483f0e22'
XISIS3 - Integrated Software for Imagers and Spectrometers Version 3
X
XIsis, an image processing software package. The focus of the software 
Xis to manipulate imagery collected by current and past NASA planetary 
Xmissions sent to Mars, Jupiter, Saturn, and other solar system bodies.
XFor more information on the software see
Xhttp://isis.astrogeology.usgs.gov
X
a55f3cf3fe7966bde184bb2a483f0e22
echo x - isis3/pkg-plist
sed 's/^X//' >isis3/pkg-plist << '65b134f0d82fc23433717f57e8aa4397'
Xisis/3.4.0/IsisPreferences
Xisis/3.4.0/bin/algebra
Xisis/3.4.0/bin/apollo2isis
Xisis/3.4.0/bin/apollocal
Xisis/3.4.0/bin/apollofindrx
Xisis/3.4.0/bin/apollopaninit
Xisis/3.4.0/bin/apollopansticher
Xisis/3.4.0/bin/apolloremrx
Xisis/3.4.0/bin/apollowarp
Xisis/3.4.0/bin/appjit
Xisis/3.4.0/bin/ascii2isis
Xisis/3.4.0/bin/automos
Xisis/3.4.0/bin/autoregtemplate
Xisis/3.4.0/bin/autoseed
Xisis/3.4.0/bin/bandnorm
Xisis/3.4.0/bin/bandtrim
Xisis/3.4.0/bin/bit2bit
Xisis/3.4.0/bin/blend
Xisis/3.4.0/bin/blobdump
Xisis/3.4.0/bin/butterworth
Xisis/3.4.0/bin/cam2cam
Xisis/3.4.0/bin/cam2map
Xisis/3.4.0/bin/caminfo
Xisis/3.4.0/bin/campt
Xisis/3.4.0/bin/camrange
Xisis/3.4.0/bin/camstats
Xisis/3.4.0/bin/camtrim
Xisis/3.4.0/bin/cathist
Xisis/3.4.0/bin/catlab
Xisis/3.4.0/bin/catoriglab
Xisis/3.4.0/bin/circle
Xisis/3.4.0/bin/circle2
Xisis/3.4.0/bin/ciss2isis
Xisis/3.4.0/bin/cisscal
Xisis/3.4.0/bin/ckwriter
Xisis/3.4.0/bin/clem2isis
Xisis/3.4.0/bin/clemhirescal
Xisis/3.4.0/bin/clemnircal
Xisis/3.4.0/bin/clemnirclean
Xisis/3.4.0/bin/clemnirnoise
Xisis/3.4.0/bin/clemuvviscal
Xisis/3.4.0/bin/cnet2mat
Xisis/3.4.0/bin/cnetadd
Xisis/3.4.0/bin/cnetbin2pvl
Xisis/3.4.0/bin/cnetcheck
Xisis/3.4.0/bin/cnetdiff
Xisis/3.4.0/bin/cnetedit
Xisis/3.4.0/bin/cneteditor
Xisis/3.4.0/bin/cnetextract
Xisis/3.4.0/bin/cnethist
Xisis/3.4.0/bin/cnetmerge
Xisis/3.4.0/bin/cnetnewradii
Xisis/3.4.0/bin/cnetpvl2bin
Xisis/3.4.0/bin/cnetref
Xisis/3.4.0/bin/cnetsplit
Xisis/3.4.0/bin/cnetstats
Xisis/3.4.0/bin/cnettable
Xisis/3.4.0/bin/cnetwinnow
Xisis/3.4.0/bin/copylabel
Xisis/3.4.0/bin/coreg
Xisis/3.4.0/bin/cosi
Xisis/3.4.0/bin/crism2isis
Xisis/3.4.0/bin/crop
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Xisis/3.4.0/include/Brick.h
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Xisis/3.4.0/include/CubePlotCurve.h
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Xisis/3.4.0/include/DawnVirCamera.h
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Xisis/3.4.0/include/GuiStringParameter.h
Xisis/3.4.0/include/Hapke.h
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Xisis/3.4.0/include/HapkeAtm2.h
Xisis/3.4.0/include/HelpTool.h
Xisis/3.4.0/include/HiEqualization.h
Xisis/3.4.0/include/HiLab.h
Xisis/3.4.0/include/HiresCamera.h
Xisis/3.4.0/include/HiriseCamera.h
Xisis/3.4.0/include/Histogram.h
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Xisis/3.4.0/include/HistogramWidget.h
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Xisis/3.4.0/include/HrscCamera.h
Xisis/3.4.0/include/ID.h
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Xisis/3.4.0/include/IdealCamera.h
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Xisis/3.4.0/include/ImageOverlap.h
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Xisis/3.4.0/include/InterestOperator.h
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Xisis/3.4.0/include/IsisXMLApplication.h
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Xisis/3.4.0/include/IsisXMLParameter.h
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Xisis/3.4.0/include/IssNACamera.h
Xisis/3.4.0/include/IssWACamera.h
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Xisis/3.4.0/include/JP2Exporter.h
Xisis/3.4.0/include/JP2Importer.h
Xisis/3.4.0/include/KernelDb.h
Xisis/3.4.0/include/Kernels.h
Xisis/3.4.0/include/Lambert.h
Xisis/3.4.0/include/LambertConformal.h
Xisis/3.4.0/include/Latitude.h
Xisis/3.4.0/include/LeastSquares.h
Xisis/3.4.0/include/LimitPolygonSeeder.h
Xisis/3.4.0/include/LineEquation.h
Xisis/3.4.0/include/LineManager.h
Xisis/3.4.0/include/LineScanCamera.h
Xisis/3.4.0/include/LineScanCameraDetectorMap.h
Xisis/3.4.0/include/LineScanCameraGroundMap.h
Xisis/3.4.0/include/LineScanCameraSkyMap.h
Xisis/3.4.0/include/LinearStretchType.h
Xisis/3.4.0/include/LoCameraFiducialMap.h
Xisis/3.4.0/include/LoHighCamera.h
Xisis/3.4.0/include/LoHighDistortionMap.h
Xisis/3.4.0/include/LoMediumCamera.h
Xisis/3.4.0/include/LoMediumDistortionMap.h
Xisis/3.4.0/include/LommelSeeliger.h
Xisis/3.4.0/include/Longitude.h
Xisis/3.4.0/include/LroNarrowAngleCamera.h
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Xisis/3.4.0/include/LroWideAngleCamera.h
Xisis/3.4.0/include/LroWideAngleCameraDistortionMap.h
Xisis/3.4.0/include/LunarAzimuthalEqualArea.h
Xisis/3.4.0/include/LunarLambert.h
Xisis/3.4.0/include/LunarLambertEmpirical.h
Xisis/3.4.0/include/LunarLambertMcEwen.h
Xisis/3.4.0/include/LwirCamera.h
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Xisis/3.4.0/include/ManualStretchType.h
Xisis/3.4.0/include/MarciCamera.h
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Xisis/3.4.0/include/Mariner10Camera.h
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Xisis/3.4.0/include/MaximumCorrelation.h
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Xisis/3.4.0/include/MdiCubeViewport.h
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Xisis/3.4.0/include/MeasureTool.h
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Xisis/3.4.0/include/Minnaert.h
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Xisis/3.4.0/include/MocWideAngleDistortionMap.h
Xisis/3.4.0/include/MoonAlbedo.h
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Xisis/3.4.0/include/MosaicAreaTool.h
Xisis/3.4.0/include/MosaicControlNetTool.h
Xisis/3.4.0/include/MosaicController.h
Xisis/3.4.0/include/MosaicFileListWidget.h
Xisis/3.4.0/include/MosaicFindTool.h
Xisis/3.4.0/include/MosaicGraphicsView.h
Xisis/3.4.0/include/MosaicGridTool.h
Xisis/3.4.0/include/MosaicMainWindow.h
Xisis/3.4.0/include/MosaicPanTool.h
Xisis/3.4.0/include/MosaicSceneItem.h
Xisis/3.4.0/include/MosaicSceneWidget.h
Xisis/3.4.0/include/MosaicSelectTool.h
Xisis/3.4.0/include/MosaicTool.h
Xisis/3.4.0/include/MosaicTrackTool.h
Xisis/3.4.0/include/MosaicTreeWidget.h
Xisis/3.4.0/include/MosaicTreeWidgetItem.h
Xisis/3.4.0/include/MosaicZoomTool.h
Xisis/3.4.0/include/MultivariateStatistics.h
Xisis/3.4.0/include/NaifStatus.h
Xisis/3.4.0/include/NirCamera.h
Xisis/3.4.0/include/NoNormalization.h
Xisis/3.4.0/include/NoOperator.h
Xisis/3.4.0/include/NomenclatureToolConfigDialog.h
Xisis/3.4.0/include/NormModel.h
Xisis/3.4.0/include/NormModelFactory.h
Xisis/3.4.0/include/NumericalApproximation.h
Xisis/3.4.0/include/NumericalAtmosApprox.h
Xisis/3.4.0/include/ObliqueCylindrical.h
Xisis/3.4.0/include/ObservationNumber.h
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Xisis/3.4.0/include/OriginalLabel.h
Xisis/3.4.0/include/Orthographic.h
Xisis/3.4.0/include/OverlapNormalization.h
Xisis/3.4.0/include/OverlapStatistics.h
Xisis/3.4.0/include/PaletteWindow.h
Xisis/3.4.0/include/PanTool.h
Xisis/3.4.0/include/Parabola.h
Xisis/3.4.0/include/PhotoModel.h
Xisis/3.4.0/include/PhotoModelFactory.h
Xisis/3.4.0/include/Photometry.h
Xisis/3.4.0/include/Pipeline.h
Xisis/3.4.0/include/PipelineApplication.h
Xisis/3.4.0/include/Pixel.h
Xisis/3.4.0/include/PixelType.h
Xisis/3.4.0/include/PlotCurve.h
Xisis/3.4.0/include/PlotWindow.h
Xisis/3.4.0/include/PlotWindowBestFitDialog.h
Xisis/3.4.0/include/Plugin.h
Xisis/3.4.0/include/PointPerspective.h
Xisis/3.4.0/include/PolarStereographic.h
Xisis/3.4.0/include/PolygonSeeder.h
Xisis/3.4.0/include/PolygonSeederFactory.h
Xisis/3.4.0/include/PolygonTools.h
Xisis/3.4.0/include/PolynomialBivariate.h
Xisis/3.4.0/include/PolynomialUnivariate.h
Xisis/3.4.0/include/Portal.h
Xisis/3.4.0/include/Preference.h
Xisis/3.4.0/include/PrincipalComponentAnalysis.h
Xisis/3.4.0/include/Process.h
Xisis/3.4.0/include/ProcessByBoxcar.h
Xisis/3.4.0/include/ProcessByBrick.h
Xisis/3.4.0/include/ProcessByLine.h
Xisis/3.4.0/include/ProcessByQuickFilter.h
Xisis/3.4.0/include/ProcessBySample.h
Xisis/3.4.0/include/ProcessBySpectra.h
Xisis/3.4.0/include/ProcessByTile.h
Xisis/3.4.0/include/ProcessExport.h
Xisis/3.4.0/include/ProcessExportPds.h
Xisis/3.4.0/include/ProcessGroundPolygons.h
Xisis/3.4.0/include/ProcessImport.h
Xisis/3.4.0/include/ProcessImportPds.h
Xisis/3.4.0/include/ProcessImportVicar.h
Xisis/3.4.0/include/ProcessMapMosaic.h
Xisis/3.4.0/include/ProcessMosaic.h
Xisis/3.4.0/include/ProcessPolygons.h
Xisis/3.4.0/include/ProcessRubberSheet.h
Xisis/3.4.0/include/ProfileDialog.h
Xisis/3.4.0/include/ProgramLauncher.h
Xisis/3.4.0/include/Progress.h
Xisis/3.4.0/include/ProgressBar.h
Xisis/3.4.0/include/Projection.h
Xisis/3.4.0/include/ProjectionFactory.h
Xisis/3.4.0/include/PushFrameCamera.h
Xisis/3.4.0/include/PushFrameCameraDetectorMap.h
Xisis/3.4.0/include/PushFrameCameraGroundMap.h
Xisis/3.4.0/include/Pvl.h
Xisis/3.4.0/include/PvlContainer.h
Xisis/3.4.0/include/PvlEditDialog.h
Xisis/3.4.0/include/PvlFormat.h
Xisis/3.4.0/include/PvlFormatPds.h
Xisis/3.4.0/include/PvlGroup.h
Xisis/3.4.0/include/PvlKeyword.h
Xisis/3.4.0/include/PvlObject.h
Xisis/3.4.0/include/PvlSequence.h
Xisis/3.4.0/include/PvlToken.h
Xisis/3.4.0/include/PvlTokenizer.h
Xisis/3.4.0/include/PvlTranslationManager.h
Xisis/3.4.0/include/PvlTranslationTable.h
Xisis/3.4.0/include/QHistogram.h
Xisis/3.4.0/include/QIsisApplication.h
Xisis/3.4.0/include/QStretch.h
Xisis/3.4.0/include/QtExporter.h
Xisis/3.4.0/include/QtImporter.h
Xisis/3.4.0/include/Quaternion.h
Xisis/3.4.0/include/QuickFilter.h
Xisis/3.4.0/include/RadarCamera.h
Xisis/3.4.0/include/RadarGroundMap.h
Xisis/3.4.0/include/RadarGroundRangeMap.h
Xisis/3.4.0/include/RadarPulseMap.h
Xisis/3.4.0/include/RadarSkyMap.h
Xisis/3.4.0/include/RadarSlantRangeMap.h
Xisis/3.4.0/include/RadialDistortionMap.h
Xisis/3.4.0/include/Ransac.h
Xisis/3.4.0/include/RawCubeChunk.h
Xisis/3.4.0/include/Reduce.h
Xisis/3.4.0/include/RegionalCachingAlgorithm.h
Xisis/3.4.0/include/ReseauDistortionMap.h
Xisis/3.4.0/include/RubberBandComboBox.h
Xisis/3.4.0/include/RubberBandTool.h
Xisis/3.4.0/include/SampleManager.h
Xisis/3.4.0/include/SaveAsDialog.h
Xisis/3.4.0/include/SawtoothStretchType.h
Xisis/3.4.0/include/ScatterPlotAlarmConfigDialog.h
Xisis/3.4.0/include/ScatterPlotConfigDialog.h
Xisis/3.4.0/include/ScatterPlotData.h
Xisis/3.4.0/include/ScatterPlotTool.h
Xisis/3.4.0/include/ScatterPlotWindow.h
Xisis/3.4.0/include/Selection.h
Xisis/3.4.0/include/Sensor.h
Xisis/3.4.0/include/SerialNumber.h
Xisis/3.4.0/include/SerialNumberList.h
Xisis/3.4.0/include/SessionLog.h
Xisis/3.4.0/include/Shade.h
Xisis/3.4.0/include/ShadeAtm.h
Xisis/3.4.0/include/SimpleCylindrical.h
Xisis/3.4.0/include/Sinusoidal.h
Xisis/3.4.0/include/SmtkMatcher.h
Xisis/3.4.0/include/SmtkPoint.h
Xisis/3.4.0/include/SmtkStack.h
Xisis/3.4.0/include/SocketThread.h
Xisis/3.4.0/include/SparseBlockMatrix.h
Xisis/3.4.0/include/SpatialPlotTool.h
Xisis/3.4.0/include/SpecialPixel.h
Xisis/3.4.0/include/SpecialPixelTool.h
Xisis/3.4.0/include/SpectralPlotTool.h
Xisis/3.4.0/include/SpectralPlotWindow.h
Xisis/3.4.0/include/Spice.h
Xisis/3.4.0/include/SpicePosition.h
Xisis/3.4.0/include/SpiceRotation.h
Xisis/3.4.0/include/SqlQuery.h
Xisis/3.4.0/include/SqlRecord.h
Xisis/3.4.0/include/SsiCamera.h
Xisis/3.4.0/include/StandardDeviationOperator.h
Xisis/3.4.0/include/StatCumProbDistDynCalc.h
Xisis/3.4.0/include/Statistics.h
Xisis/3.4.0/include/StatisticsTool.h
Xisis/3.4.0/include/Stereo.h
Xisis/3.4.0/include/StereoTool.h
Xisis/3.4.0/include/StreamExporter.h
Xisis/3.4.0/include/Stretch.h
Xisis/3.4.0/include/StretchTool.h
Xisis/3.4.0/include/StretchType.h
Xisis/3.4.0/include/StripPolygonSeeder.h
Xisis/3.4.0/include/SubArea.h
Xisis/3.4.0/include/SunShadowTool.h
Xisis/3.4.0/include/SurfaceModel.h
Xisis/3.4.0/include/SurfacePoint.h
Xisis/3.4.0/include/Tab.h
Xisis/3.4.0/include/TabBar.h
Xisis/3.4.0/include/Table.h
Xisis/3.4.0/include/TableField.h
Xisis/3.4.0/include/TableMainWindow.h
Xisis/3.4.0/include/TableRecord.h
Xisis/3.4.0/include/TaylorCameraDistortionMap.h
Xisis/3.4.0/include/TextFile.h
Xisis/3.4.0/include/ThemisIrCamera.h
Xisis/3.4.0/include/ThemisIrDistortionMap.h
Xisis/3.4.0/include/ThemisVisCamera.h
Xisis/3.4.0/include/ThemisVisDistortionMap.h
Xisis/3.4.0/include/TiffExporter.h
Xisis/3.4.0/include/TiffImporter.h
Xisis/3.4.0/include/TileManager.h
Xisis/3.4.0/include/Tool.h
Xisis/3.4.0/include/ToolPad.h
Xisis/3.4.0/include/Topo.h
Xisis/3.4.0/include/TopoAtm.h
Xisis/3.4.0/include/TrackTool.h
Xisis/3.4.0/include/Transform.h
Xisis/3.4.0/include/TransverseMercator.h
Xisis/3.4.0/include/UniqueIOCachingAlgorithm.h
Xisis/3.4.0/include/UniversalGroundMap.h
Xisis/3.4.0/include/UserInterface.h
Xisis/3.4.0/include/UvvisCamera.h
Xisis/3.4.0/include/VariableLineScanCameraDetectorMap.h
Xisis/3.4.0/include/VecFilter.h
Xisis/3.4.0/include/ViewportBuffer.h
Xisis/3.4.0/include/ViewportBufferAction.h
Xisis/3.4.0/include/ViewportBufferFill.h
Xisis/3.4.0/include/ViewportBufferStretch.h
Xisis/3.4.0/include/ViewportBufferTransform.h
Xisis/3.4.0/include/ViewportMainWindow.h
Xisis/3.4.0/include/VikingCamera.h
Xisis/3.4.0/include/VimsCamera.h
Xisis/3.4.0/include/VimsGroundMap.h
Xisis/3.4.0/include/VimsSkyMap.h
Xisis/3.4.0/include/VoyagerCamera.h
Xisis/3.4.0/include/WarningWidget.h
Xisis/3.4.0/include/WindowTool.h
Xisis/3.4.0/include/Workspace.h
Xisis/3.4.0/include/WorldMapper.h
Xisis/3.4.0/include/ZoomTool.h
Xisis/3.4.0/include/apollo_pan_IO.h
Xisis/3.4.0/include/iString.h
Xisis/3.4.0/include/iTime.h
Xisis/3.4.0/include/mocxtrack.h
Xisis/3.4.0/lib/AtmosModel.plugin
Xisis/3.4.0/lib/AutoReg.plugin
Xisis/3.4.0/lib/Camera.plugin
Xisis/3.4.0/lib/InterestOperator.plugin
Xisis/3.4.0/lib/NormModel.plugin
Xisis/3.4.0/lib/PhotoModel.plugin
Xisis/3.4.0/lib/PolygonSeeder.plugin
Xisis/3.4.0/lib/Projection.plugin
Xisis/3.4.0/lib/libAdaptiveGruen.so
Xisis/3.4.0/lib/libAlbedo.so
Xisis/3.4.0/lib/libAlbedoAtm.so
Xisis/3.4.0/lib/libAnisotropic1.so
Xisis/3.4.0/lib/libAnisotropic2.so
Xisis/3.4.0/lib/libApolloMetricCamera.so
Xisis/3.4.0/lib/libApolloPanoramicCamera.so
Xisis/3.4.0/lib/libCTXCamera.so
Xisis/3.4.0/lib/libDawnFcCamera.so
Xisis/3.4.0/lib/libDawnVirCamera.so
Xisis/3.4.0/lib/libEquirectangular.so
Xisis/3.4.0/lib/libForstnerOperator.so
Xisis/3.4.0/lib/libGradientOperator.so
Xisis/3.4.0/lib/libGridPolygonSeeder.so
Xisis/3.4.0/lib/libHapke.so
Xisis/3.4.0/lib/libHapkeAtm1.so
Xisis/3.4.0/lib/libHapkeAtm2.so
Xisis/3.4.0/lib/libHiresCamera.so
Xisis/3.4.0/lib/libHiriseCamera.so
Xisis/3.4.0/lib/libHrscCamera.so
Xisis/3.4.0/lib/libIdealCamera.so
Xisis/3.4.0/lib/libIsotropic1.so
Xisis/3.4.0/lib/libIsotropic2.so
Xisis/3.4.0/lib/libIssNACamera.so
Xisis/3.4.0/lib/libIssWACamera.so
Xisis/3.4.0/lib/libLambert.so
Xisis/3.4.0/lib/libLambertConformal.so
Xisis/3.4.0/lib/libLimitPolygonSeeder.so
Xisis/3.4.0/lib/libLoHighCamera.so
Xisis/3.4.0/lib/libLoMediumCamera.so
Xisis/3.4.0/lib/libLommelSeeliger.so
Xisis/3.4.0/lib/libLroNarrowAngleCamera.so
Xisis/3.4.0/lib/libLroWideAngleCamera.so
Xisis/3.4.0/lib/libLunarAzimuthalEqualArea.so
Xisis/3.4.0/lib/libLunarLambert.so
Xisis/3.4.0/lib/libLunarLambertEmpirical.so
Xisis/3.4.0/lib/libLunarLambertMcEwen.so
Xisis/3.4.0/lib/libLwirCamera.so
Xisis/3.4.0/lib/libMarciCamera.so
Xisis/3.4.0/lib/libMariner10Camera.so
Xisis/3.4.0/lib/libMaximumCorrelation.so
Xisis/3.4.0/lib/libMdisCamera.so
Xisis/3.4.0/lib/libMercator.so
Xisis/3.4.0/lib/libMiniRF.so
Xisis/3.4.0/lib/libMinimumDifference.so
Xisis/3.4.0/lib/libMinnaert.so
Xisis/3.4.0/lib/libMinnaertEmpirical.so
Xisis/3.4.0/lib/libMixed.so
Xisis/3.4.0/lib/libMocNarrowAngleCamera.so
Xisis/3.4.0/lib/libMocWideAngleCamera.so
Xisis/3.4.0/lib/libMoonAlbedo.so
Xisis/3.4.0/lib/libMoravecOperator.so
Xisis/3.4.0/lib/libNirCamera.so
Xisis/3.4.0/lib/libNoNormalization.so
Xisis/3.4.0/lib/libNoOperator.so
Xisis/3.4.0/lib/libObliqueCylindrical.so
Xisis/3.4.0/lib/libOrthographic.so
Xisis/3.4.0/lib/libPointPerspective.so
Xisis/3.4.0/lib/libPolarStereographic.so
Xisis/3.4.0/lib/libShade.so
Xisis/3.4.0/lib/libShadeAtm.so
Xisis/3.4.0/lib/libSimpleCylindrical.so
Xisis/3.4.0/lib/libSinusoidal.so
Xisis/3.4.0/lib/libSsiCamera.so
Xisis/3.4.0/lib/libStandardDeviationOperator.so
Xisis/3.4.0/lib/libStripPolygonSeeder.so
Xisis/3.4.0/lib/libThemisIrCamera.so
Xisis/3.4.0/lib/libThemisVisCamera.so
Xisis/3.4.0/lib/libTopo.so
Xisis/3.4.0/lib/libTopoAtm.so
Xisis/3.4.0/lib/libTransverseMercator.so
Xisis/3.4.0/lib/libUvvisCamera.so
Xisis/3.4.0/lib/libVikingCamera.so
Xisis/3.4.0/lib/libVimsCamera.so
Xisis/3.4.0/lib/libVoyagerCamera.so
Xisis/3.4.0/lib/libisis3.4.0.a
Xisis/3.4.0/lib/libisis3.4.0.so
Xisis/3.4.0/lib/libisis3.4.0.so.3
Xisis/3.4.0/lib/libisis3.4.so
Xisis/3.4.0/lib/libisis3.so
Xisis/3.4.0/templates/gui/basictemplate.xml
Xisis/3.4.0/templates/gui/comparisontemplate.xml
Xisis/3.4.0/templates/gui/defaulttemplate.xml
Xisis/3.4.0/templates/gui/listtemplate.xml
Xisis/3.4.0/templates/gui/typetemplate.xml
Xisis/3.4.0/version
X@dirrm isis/3.4.0/templates/gui
X@dirrm isis/3.4.0/templates
X@dirrm isis/3.4.0/lib
X@dirrm isis/3.4.0/include
X@dirrm isis/3.4.0/bin/xml
X@dirrm isis/3.4.0/bin
X@dirrm isis/3.4.0
X@dirrm isis
65b134f0d82fc23433717f57e8aa4397
echo x - isis3/Makefile
sed 's/^X//' >isis3/Makefile << 'de0c704a7a1cfe07904b1ca1a4fba3a3'
X# New ports collection makefile for:   isis3
X# Date created:        30. March 2011
X# Whom:                O. Hartmann, R. O'Hara
X#
X# $FreeBSD$
X#
X
XPORTNAME=		isis
XPORTVERSION_MINOR=	0
XPORTVERSION_MAJOR=	3.4
XPORTVERSION=		${PORTVERSION_MAJOR}.${PORTVERSION_MINOR}
XPORTREVISION=		0
XCATEGORIES=		science
XMASTER_SITES=
XDISTNAME=		isis-${PORTVERSION}
X
X.include <bsd.port.pre.mk>
X
XLICENSE_FILE=		${WRKSRC}/license.txt
X
XMAINTAINER=		ports@FreeBSD.Org
XCOMMENT=		Integrated Software for Imagers and Spectrometers
XCOMMENT+=		SOURCE: rsync -azv --delete --partial isisdist.astrogeology.usgs.gov::x86-64_linux_DEBIAN/isis .
XCOMMENT+=		DATA: rsync -azv --delete --partial isisdist.astrogeology.usgs.gov::isis3data/data .
X
XUSE_QT_VER=     	4
XQT_COMPONENTS=  	moc rcc uic
XUSE_X11=		x11
XUSE_GL=			yes
XUSE_GCC=		4.6+
XUSE_PYTHON=		2.7+
XUSE_LDCONFIG=		yes
XUSE_GMAKE=		yes
XUSE_MYSQL=		yes
XUSE_PGSQL=		yes
X
XBUILD_DEPENDS+=		${LOCALBASE}/bin/latex:${PORTSDIR}/print/teTeX
XBUILD_DEPENDS+=		${LOCALBASE}/bin/doxygen:${PORTSDIR}/devel/doxygen
X
XRUN_DEPENDS+=		${LOCALBASE}/include/tnt/jama_lu.h:${PORTSDIR}/math/jama
XRUN_DEPENDS+=		${LOCALBASE}/include/gmm/gmm.h:${PORTSDIR}/math/gmm++
XRUN_DEPENDS+=		${LOCALBASE}/bin/gawk:${PORTSDIR}/lang/gawk
XRUN_DEPENDS+=		${LOCALBASE}/bin/xalan-j:${PORTSDIR}/textproc/xalan-j
X#
XLIB_DEPENDS+=		qwt6.6:${PORTSDIR}/x11-toolkits/qwt6
XLIB_DEPENDS+=		boost_thread.4:${PORTSDIR}/devel/boost-libs
XLIB_DEPENDS+=		cwd.2:${PORTSDIR}/devel/libcwd
XLIB_DEPENDS+=		gsl.16:${PORTSDIR}/math/gsl
XLIB_DEPENDS+=		cholmod.1:${PORTSDIR}/math/suitesparse
XLIB_DEPENDS+=		jpeg.11:${PORTSDIR}/graphics/jpeg
XLIB_DEPENDS+=		tiff.4:${PORTSDIR}/graphics/tiff
XLIB_DEPENDS+=		png15.15:${PORTSDIR}/graphics/png
XLIB_DEPENDS+=		geos.0:${PORTSDIR}/graphics/geos
XLIB_DEPENDS+=		gdal.17:${PORTSDIR}/graphics/gdal
XLIB_DEPENDS+=		protobuf.7:${PORTSDIR}/devel/protobuf
XLIB_DEPENDS+=		phonon:${PORTSDIR}/multimedia/phonon
XLIB_DEPENDS+=		superlu.4:${PORTSDIR}/math/superlu
X#
XLIB_DEPENDS+=		QtCore.4:${PORTSDIR}/devel/qt4-corelib
XLIB_DEPENDS+=		QtGui.4:${PORTSDIR}/x11-toolkits/qt4-gui
XLIB_DEPENDS+=		QtAssistantClient.4:${PORTSDIR}/devel/qt4-assistant
XLIB_DEPENDS+=		QtNetwork.4:${PORTSDIR}/net/qt4-network
XLIB_DEPENDS+=		QtScript.4:${PORTSDIR}/devel/qt4-script
XLIB_DEPENDS+=		QtScriptTools.4:${PORTSDIR}/devel/qt4-scripttools
XLIB_DEPENDS+=		QtSql.4:${PORTSDIR}/databases/qt4-sql
XLIB_DEPENDS+=		QtSvg.4:${PORTSDIR}/graphics/qt4-svg
XLIB_DEPENDS+=		QtWebKit.4:${PORTSDIR}/www/qt4-webkit
XLIB_DEPENDS+=		QtXml.4:${PORTSDIR}/textproc/qt4-xml
XLIB_DEPENDS+=		QtXmlPatterns.4:${PORTSDIR}/textproc/qt4-xmlpatterns
XLIB_DEPENDS+=		QtOpenGL.4:${PORTSDIR}/x11/qt4-opengl
XLIB_DEPENDS+=		QtTest.4:${PORTSDIR}/devel/qt4-qtestlib
X#
XLIB_DEPENDS+=		cspice.6:${PORTSDIR}/astro/cspice
XLIB_DEPENDS+=		xerces-c.3:${PORTSDIR}/textproc/xerces-c3
X
XISIS3_LIBRARY_VERSION=	3:4:0
XISIS3_LIB_VERSION=	3
XISIS3_LIB_BASE=		lib${PORTNAME}3.so
XISIS3_LIB_MINOR=	lib${PORTNAME}${PORTVERSION_MAJOR}.so
XISIS3_LIB_FULL_VER=	lib${PORTNAME}${PORTVERSION}.so.${ISIS3_LIB_VERSION}
XISIS3_LIB_FULL=		lib${PORTNAME}${PORTVERSION}.so
XISIS3_LIB_STATIC=	lib${PORTNAME}${PORTVERSION}.a
X
XISIS3_ROOT=		${PREFIX}/${PORTNAME}/${PORTVERSION}
X
XMAKE_ENV+=		ISISROOT=${WRKSRC}
XMAKE_ARGS+=		all
X
XLDCONFIG_ARGS+=		-version-info $(ISIS3_LIBRARY_VERSION)
X
Xpre-configure:
X	unset ISISROOT
X	export ISISROOT=${WRKSRC}
X	${INSTALL_DATA} ${FILESDIR}/config.freebsd ${WRKSRC}/make/
X
Xdo-install:
X	${MKDIR} ${ISIS3_ROOT}/lib
X	${INSTALL_PROGRAM} ${WRKSRC}/lib/${ISIS3_LIB_FULL} ${ISIS3_ROOT}/lib/${ISIS3_LIB_FULL_VER}
X	${INSTALL_PROGRAM} ${WRKSRC}/lib/lib[A-Z]*.so ${ISIS3_ROOT}/lib/
X	${INSTALL_DATA} ${WRKSRC}/lib/${ISIS3_LIB_STATIC} ${ISIS3_ROOT}/lib/
X	${INSTALL_DATA} ${WRKSRC}/lib/*.plugin ${ISIS3_ROOT}/lib/
X	${MKDIR} ${ISIS3_ROOT}/include
X	${INSTALL_DATA} ${WRKSRC}/inc/*.h ${ISIS3_ROOT}/include/
X	${MKDIR} ${ISIS3_ROOT}/templates/gui/
X	${INSTALL_DATA} ${WRKSRC}/templates/gui/*.xml ${ISIS3_ROOT}/templates/gui/
X	${MKDIR} ${ISIS3_ROOT}/bin
X	${INSTALL_PROGRAM} ${WRKSRC}/bin/[a-w]* ${ISIS3_ROOT}/bin/
X	${MKDIR} ${ISIS3_ROOT}/bin/xml/
X	${INSTALL_DATA} ${WRKSRC}/bin/xml/* ${ISIS3_ROOT}/bin/xml/
X	${INSTALL_DATA} ${WRKSRC}/IsisPreferences ${ISIS3_ROOT}/
X	
Xpost-install:
X	@${ECHO} "Doing post-install ..."; \
X	cd ${ISIS3_ROOT}/lib &&\
X	${LN} -fs ${ISIS3_LIB_FULL_VER}  ${ISIS3_LIB_FULL} &&\
X	${LN} -fs ${ISIS3_LIB_FULL}  ${ISIS3_LIB_MINOR} &&\
X	${LN} -fs ${ISIS3_LIB_MINOR}  ${ISIS3_LIB_BASE}
X	echo ${PORTVERSION} > ${ISIS3_ROOT}/version
X
X.include <bsd.port.post.mk>
de0c704a7a1cfe07904b1ca1a4fba3a3
exit



>Release-Note:
>Audit-Trail:

From: "O. Hartmann" <ohartman@zedat.fu-berlin.de>
To: bug-followup@FreeBSD.org, ohartman@zedat.fu-berlin.de
Cc:  
Subject: Re: ports/171019: [new port] science/isis3: USGS ISIS3 planetary
 mapping tool
Date: Tue, 25 Sep 2012 15:51:59 +0200

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 --------------080904040108080205020100
 Content-Type: text/plain; charset=ISO-8859-15
 Content-Transfer-Encoding: quoted-printable
 
 Since the USGS does not provide a version scheme that is "port"
 friendly, the fact that version 3.4.1 of the ISIS3 suite is out was a
 bit a secret.
 
 Attached, I will provide a new port fileset created recently. there is
 still an issue using CLANG with devel/tnt which prevents the port to be
 built with CLANG 3.2 and 3.1 (see PR ports/171950). Most code portions
 compile with the new CLANg base compiler.
 
 --------------080904040108080205020100
 Content-Type: text/plain; charset=us-ascii;
  name="isis3.txt"
 Content-Transfer-Encoding: quoted-printable
 Content-Disposition: attachment;
  filename="isis3.txt"
 
 # This is a shell archive.  Save it in a file, remove anything before
 # this line, and then unpack it by entering "sh file".  Note, it may
 # create directories; files and directories will be owned by you and
 # have default permissions.
 #
 # This archive contains:
 #
 #	isis3
 #	isis3/files
 #	isis3/files/patch-make-isismake.apps
 #	isis3/files/patch-make-isismake.macros
 #	isis3/files/patch-src-docsys-Makefile
 #	isis3/files/patch-src-base-objs-Affine-Affine.cpp
 #	isis3/files/patch-src-base-objs-PrincipalComponentAnalysis-PrincipalCom=
 ponentAnalysis.cpp
 #	isis3/files/patch-src-control-obj-BundleAdjust-BundleAdjust.h
 #	isis3/files/patch-src-base-objs-ForstnerOpwerator-ForstnerOperator.cpp
 #	isis3/files/patch-Makefile
 #	isis3/files/patch-src-qisis-objs-RubberBandTool-RubberBandTool.cpp
 #	isis3/files/config.freebsd
 #	isis3/files/patch-src-base-apps-equalizer-equalizer.cpp
 #	isis3/files/patch-src-base-objs-LeastSquares-LeastSquares.cpp
 #	isis3/files/patch-src-base-objs-Matrix-Matrix.cpp
 #	isis3/files/patch-config-Makefile
 #	isis3/files/patch-src-base-objs-SpiceRotation-SpiceRotation.cpp
 #	isis3/files/patch-src-base-objs-CollectorMap-CollectorMap.h
 #	isis3/distinfo
 #	isis3/pkg-descr
 #	isis3/pkg-plist
 #	isis3/Makefile
 #
 echo c - isis3
 mkdir -p isis3 > /dev/null 2>&1
 echo c - isis3/files
 mkdir -p isis3/files > /dev/null 2>&1
 echo x - isis3/files/patch-make-isismake.apps
 sed 's/^X//' >isis3/files/patch-make-isismake.apps << 'a0f1dcc88aeed93c6d=
 064020ddb5209c'
 X--- make/isismake.apps.orig	2011-08-25 17:33:46.000000000 +0200
 X+++ make/isismake.apps	2012-02-03 01:21:09.000000000 +0100
 X@@ -76,12 +76,12 @@
 X 	$(CXX) $(ALLLIBDIRS) $(ISISLDFLAGS) $(ISISLDRPATH) -o $@ $(OBJS) $(ALL=
 LIBS)
 X=20
 X .cpp.o: qtmoc
 X-	$(CXX) $(ALLINCDIRS) $(ISISCPPFLAGS) $(CPPFLAGS) -c -o $@ $?
 X+	$(CXX) $(ALLINCDIRS) $(ISISCPPFLAGS) -c -o $@ $?
 X=20
 X .c.o :
 X-	$(CC) $(ALLINCDIRS) $(ISISCFLAGS) $(CFLAGS) -c -o $@ $?
 X+	$(CC) $(ALLINCDIRS) $(ISISCFLAGS) -c -o $@ $?
 X=20
 X-.cc.o:=20
 X+.cc.o:
 X 	$(CXX) $(ALLINCDIRS) $(ISISCPPFLAGS) -c -o $@ $?
 X=20
 X .xml.html :
 a0f1dcc88aeed93c6d064020ddb5209c
 echo x - isis3/files/patch-make-isismake.macros
 sed 's/^X//' >isis3/files/patch-make-isismake.macros << '2308e02393c2e50b=
 7ff94cfd4c877f29'
 X--- make/isismake.macros.orig	2012-08-15 03:57:46.000000000 +0200
 X+++ make/isismake.macros	2012-09-25 01:00:29.000000000 +0200
 X@@ -22,6 +22,10 @@
 X     HOST_PROC =3D unknown
 X endif
 X=20
 X+ifeq ($(HOST_ARCH),FreeBSD)
 X+  include $(ISISROOT)/make/config.freebsd
 X+endif
 X+
 X ifeq ($(HOST_ARCH),SunOS)
 X   include $(ISISROOT)/make/config.solaris
 X endif
 X@@ -41,21 +45,22 @@
 X #----------------------------------------------------------------------=
 -----
 X #  Set up some basic commands
 X #----------------------------------------------------------------------=
 -----
 X-CXX            ?=3D g++
 X-CC             ?=3D gcc
 X-LDSHARED       ?=3D $(CXX)
 X-MOC            ?=3D moc
 X+CXX            ?=3D $(CXX)
 X+CC             ?=3D $(CC)
 X+CPP            ?=3D $(CPP)
 X+LDSHARED       ?=3D $(CXX) -Wl,-E -shared
 X+MOC            ?=3D $(MOC)
 X PROTOC         ?=3D protoc
 X-UIC            ?=3D uic
 X-XALAN          ?=3D Xalan
 X-LS             ?=3D /bin/ls
 X-RM             ?=3D /bin/rm -f
 X-CP             ?=3D /bin/cp
 X+UIC            ?=3D $(UIC)
 X+XALAN          ?=3D xalan-j -FLAVOR d2d=3DDOM
 X+LS             ?=3D ls
 X+RM             ?=3D rm -f
 X+CP             ?=3D cp
 X LN             ?=3D ln -s
 X-CAT            ?=3D /bin/cat
 X-RANLIB         ?=3D /usr/bin/true
 X+CAT            ?=3D cat
 X+RANLIB         ?=3D ranlib
 X MACHINE        ?=3D uname
 X-DIFF           ?=3D /usr/bin/diff
 X+DIFF           ?=3D diff
 X GREP           ?=3D grep
 X EVAL           ?=3D eval
 X WHICH          ?=3D which
 X@@ -65,10 +70,10 @@
 X MV             ?=3D mv
 X RSYNC          ?=3D rsync
 X SED            ?=3D sed
 X-DATE           ?=3D /bin/date
 X-PRINTF         ?=3D /usr/bin/printf
 X-ECHO           ?=3D /bin/echo
 X-CUT            ?=3D /usr/bin/cut
 X+DATE           ?=3D date
 X+PRINTF         ?=3D printf
 X+ECHO           ?=3D echo
 X+CUT            ?=3D cut
 X PATCHELF       ?=3D patchelf
 X=20
 X CURTIMESTAMP   ?=3D "[`date +'%Y-%m-%d %H:%M:%S'`]"
 X@@ -85,8 +90,10 @@
 X=20
 X ifeq ($(HOST_ARCH),SunOS)
 X   AWK         ?=3D /usr/xpg4/bin/awk
 X+else ifeq ($(HOST_ARCH),FreeBSD)
 X+  AWK         ?=3D gawk
 X else
 X-  AWK         ?=3D awk
 X+  AWK	      ?=3D awk
 X endif
 X=20
 X ifeq ($(HOST_ARCH),Darwin)
 X@@ -95,16 +102,19 @@
 X   LATEX       ?=3D /opt/local/bin/latex
 X else
 X   DOXYGEN     ?=3D doxygen
 X+  DOT_PATH    ?=3D /usr/local/bin/
 X   LATEX       ?=3D latex
 X endif
 X=20
 X-# Set up Xalan's command-line option names. Some version of Xalan use d=
 ifferent
 X-# option names (e.g. Ubuntu's and Debian's Xalan).
 X-XALAN_VALIDATE_OPTION :=3D -v
 X-XALAN_OUTFILE_OPTION :=3D -o
 X-XALAN_PARAM_OPTION :=3D -p
 X-XALAN_INFILE_OPTION :=3D
 X-XALAN_XSL_OPTION :=3D
 X+#XALAN_VALIDATE_OPTION :=3D
 X+XALAN_OUTFILE_OPTION :=3D -OUT
 X+XALAN_PARAM_OPTION :=3D -PARAM
 X+XALAN_INFILE_OPTION :=3D -IN
 X+XALAN_XSL_OPTION :=3D -XSL
 X+
 X+ifeq ($(HOST_ARCH),FreeBSD)
 X+  HOST_OS :=3D FreeBSD
 X+endif
 X=20
 X # set up HOST_OS
 X testFile =3D $(wildcard /etc/SuSE-release)
 2308e02393c2e50b7ff94cfd4c877f29
 echo x - isis3/files/patch-src-docsys-Makefile
 sed 's/^X//' >isis3/files/patch-src-docsys-Makefile << 'bdca3f5d04f1158f9=
 bff0bf72a52f810'
 X--- src/docsys/Makefile.orig	2012-02-04 12:27:12.000000000 +0100
 X+++ src/docsys/Makefile	2012-02-04 12:40:35.000000000 +0100
 X@@ -76,7 +76,7 @@
 X=20
 X 	echo "        [home page]"
 X 	#rsync -lHptr --delete --rsh=3Dssh --cvs-exclude *.html $(DOCDIR)/
 X-	$(XALAN) $(XALAN_VALIDATE_OPTION) $(XALAN_PARAM_OPTION) menuPath "'./'=
 " $(XALAN_OUTFILE_OPTION) $(DOCDIR)/index.html $(XALAN_INFILE_OPTION) bui=
 ld/homepage.xml $(XALAN_XSL_OPTION) build/main.xsl
 X+	#$(XALAN) $(XALAN_VALIDATE_OPTION) $(XALAN_PARAM_OPTION) menuPath "'./=
 '" $(XALAN_OUTFILE_OPTION) $(DOCDIR)/index.html $(XALAN_INFILE_OPTION) bu=
 ild/homepage.xml $(XALAN_XSL_OPTION) build/main.xsl
 X=20
 X 	echo "      Finished Updating Directories"
 X=20
 bdca3f5d04f1158f9bff0bf72a52f810
 echo x - isis3/files/patch-src-base-objs-Affine-Affine.cpp
 sed 's/^X//' >isis3/files/patch-src-base-objs-Affine-Affine.cpp << '43277=
 d2afbc00e477b4d0e5e08bcbee3'
 X--- src/base/objs/Affine/Affine.cpp.orig	2010-11-19 22:20:35.168686503 +=
 0100
 X+++ src/base/objs/Affine/Affine.cpp	2010-11-19 22:20:35.169688574 +0100
 X@@ -23,7 +23,12 @@
 X #include <vector>
 X #include <iostream>
 X #include <string>
 X+
 X+#ifdef __FreeBSD__=20
 X+#include "tnt/jama_svd.h"
 X+#else
 X #include "jama/jama_svd.h"
 X+#endif
 X=20
 X #include "Affine.h"
 X #include "PolynomialBivariate.h"
 43277d2afbc00e477b4d0e5e08bcbee3
 echo x - isis3/files/patch-src-base-objs-PrincipalComponentAnalysis-Princ=
 ipalComponentAnalysis.cpp
 sed 's/^X//' >isis3/files/patch-src-base-objs-PrincipalComponentAnalysis-=
 PrincipalComponentAnalysis.cpp << 'f016f33a7b428c6558ae9fe3a5f04a15'
 X--- src/base/objs/PrincipalComponentAnalysis/PrincipalComponentAnalysis.=
 cpp.orig	2010-11-19 22:20:44.224827970 +0100
 X+++ src/base/objs/PrincipalComponentAnalysis/PrincipalComponentAnalysis.=
 cpp	2010-11-19 22:20:44.224827970 +0100
 X@@ -21,8 +21,14 @@
 X  */
 X=20
 X #include "PrincipalComponentAnalysis.h"
 X+
 X+#ifdef __FreeBSD__=20
 X+#include "tnt/jama_eig.h"
 X+#include "tnt/jama_lu.h"
 X+#else
 X #include "jama/jama_eig.h"
 X #include "jama/jama_lu.h"
 X+#endif
 X=20
 X using namespace std;
 X=20
 f016f33a7b428c6558ae9fe3a5f04a15
 echo x - isis3/files/patch-src-control-obj-BundleAdjust-BundleAdjust.h
 sed 's/^X//' >isis3/files/patch-src-control-obj-BundleAdjust-BundleAdjust=
 =2Eh << 'ecb128cbca3d8dfc11a935c920814e35'
 X--- ./src/control/objs/BundleAdjust/BundleAdjust.h.orig	2011-11-11 20:55=
 :31.000000000 +0100
 X+++ ./src/control/objs/BundleAdjust/BundleAdjust.h	2011-11-11 20:56:35.0=
 00000000 +0100
 X@@ -113,8 +113,13 @@
 X #include "ControlMeasure.h"
 X #include "SparseBlockMatrix.h"
 X=20
 X+#ifdef __FreeBSD__
 X+#include <suitesparse/cholmod.h>
 X+#include <suitesparse/UFconfig.h>
 X+#else
 X #include <CHOLMOD/cholmod.h>
 X #include <CHOLMOD/UFconfig.h>
 X+#endif
 X=20
 X template< typename T > class QList;
 X template< typename A, typename B > class QMap;
 ecb128cbca3d8dfc11a935c920814e35
 echo x - isis3/files/patch-src-base-objs-ForstnerOpwerator-ForstnerOperat=
 or.cpp
 sed 's/^X//' >isis3/files/patch-src-base-objs-ForstnerOpwerator-ForstnerO=
 perator.cpp << '051779319e4af9201446b7f725e53090'
 X--- ./src/base/objs/ForstnerOperator/ForstnerOperator.cpp.orig	2010-11-0=
 5 22:39:33.540435075 +0100
 X+++ ./src/base/objs/ForstnerOperator/ForstnerOperator.cpp	2010-11-05 22:=
 41:25.389989047 +0100
 X@@ -2,7 +2,12 @@
 X #include "Chip.h"
 X #include "FourierTransform.h"
 X #include "tnt/tnt_array2d.h"
 X+
 X+#ifdef	__FreeBSD__
 X+#include "tnt/jama_lu.h"
 X+#else
 X #include "jama/jama_lu.h"
 X+#endif
 X #include <complex>
 X=20
 X namespace Isis {
 051779319e4af9201446b7f725e53090
 echo x - isis3/files/patch-Makefile
 sed 's/^X//' >isis3/files/patch-Makefile << '6f7335794407f704cdf8deb79463=
 7188'
 X--- Makefile.orig	2012-06-25 23:08:55.000000000 +0200
 X+++ Makefile	2012-06-25 23:10:05.000000000 +0200
 X@@ -37,7 +37,7 @@
 X # After the API is created then the applications can be individually bu=
 ilt
 X # and installed. Finally create the web documentation for the entire sy=
 stem.
 X #----------------------------------------------------------------------=
 ------
 X-all: config incs thirdParty api apps docs
 X+all: config incs api apps docs
 X=20
 X #----------------------------------------------------------------------=
 ------
 X # Target =3D config
 6f7335794407f704cdf8deb794637188
 echo x - isis3/files/patch-src-qisis-objs-RubberBandTool-RubberBandTool.c=
 pp
 sed 's/^X//' >isis3/files/patch-src-qisis-objs-RubberBandTool-RubberBandT=
 ool.cpp << '67f64b0cff17e95944f63991dfb9fa9a'
 X--- src/qisis/objs/RubberBandTool/RubberBandTool.cpp.orig	2011-09-20 21:=
 42:25.000000000 +0200
 X+++ src/qisis/objs/RubberBandTool/RubberBandTool.cpp	2012-01-30 22:43:51=
 =2E000000000 +0100
 X@@ -2,6 +2,10 @@
 X=20
 X #include <float.h>
 X=20
 X+#ifdef __FreeBSD__
 X+#include <math.h>
 X+#endif
 X+
 X #include <QList>
 X #include <QMessageBox>
 X #include <QPainter>
 67f64b0cff17e95944f63991dfb9fa9a
 echo x - isis3/files/config.freebsd
 sed 's/^X//' >isis3/files/config.freebsd << 'ef5ccb07cd7b4adb9d25495aa243=
 6e7a'
 X#-----------------------------------------------------------------------=
 ----
 X# Compiler options, derived from config.linux-x86_64
 X# CPP flags are CXX flags, but the USGS sources use CPP.
 X# If used within the ports repository framework, $(CXXFLAGS)
 X# should already be set properly.
 X#
 X# O. Hartmann (2010, 2011, 2012)
 X#
 X# ISIS 3.4.0
 X#-----------------------------------------------------------------------=
 ----
 X
 XISISCPPFLAGS=3D	$(CXXFLAGS)
 XISISCPPFLAGS+=3D	$(CPPFLAGS)
 XISISCPPFLAGS+=3D 	-ansi
 X#ISISCPPFLAGS+=3D 	-Wall
 XISISCPPFLAGS+=3D 	-w
 XISISCPPFLAGS+=3D 	-m64
 XISISCPPFLAGS+=3D 	-fPIC
 XISISCPPFLAGS+=3D 	-DISIS_LITTLE_ENDIAN=3D1
 XISISCPPFLAGS+=3D 	-DGMM_USES_SUPERLU
 X
 X
 X# Enable (1) or disable (0) usage of KAKADU
 X# Kakadu is a licens protected library!
 XISISCPPFLAGS 	+=3D -DENABLEJP2K=3D0
 X
 Xifeq ($(findstring DEBUG, $(MODE)),DEBUG)
 X  ISISCPPFLAGS 	+=3D -g=20
 X  ISISCPPFLAGS 	+=3D -O0
 X  ISISCPPFLAGS 	+=3D -DDEBUG
 X  ISISCPPFLAGS 	+=3D -W
 X  ifeq ($(findstring CWD, $(MODE)),CWD)
 X    ISISCPPFLAGS 	+=3D -DCWDEBUG -DLIBCWD_THREAD_SAFE -D_REENTRANT
 X    ifeq (,$(findstring MEMCHECK, $(MODE)))
 X      ISISCPPFLAGS 	+=3D -DNOMEMCHECK
 X    endif
 X  endif
 Xelse
 X  #ISISCPPFLAGS 	+=3D -O0 -g
 X  ISISCPPFLAGS+=3D
 Xendif
 X
 XISISCFLAGS=3D 	$(CFLAGS)
 XISISCFLAGS=3D 	$(CPPFLAGS)
 XISISCFLAGS+=3D	-ansi
 XISISCFLAGS+=3D	-fPIC
 XISISCFLAGS+=3D	-m64
 X
 X#-----------------------------------------------------------------------=
 ----
 X# Linker options
 X# Runtime paths for FreeBSD are rooted to $ISISROOT.
 X# $(LDFLAGS) should be already set with proper linker options
 X# by the ports repository framework. Not properly checked yet.
 X#
 X#-----------------------------------------------------------------------=
 ----
 X#RANLIB         =3D /usr/bin/ranlib
 XRANLIB=3D 	/usr/bin/true
 XSHAREDLIBEXT=3D 	so
 X
 XISISLDFLAGS 	=3D $(LDFLAGS)
 XISISLDFLAGS 	+=3D -L. -L.. -L/usr/local/lib
 X#
 XISISLDRPATH 	+=3D -Wl,-rpath,$(ISISROOT)/lib
 X#
 XISISSYSLIBS 	+=3D -lz -pthread
 X#
 XISISSTATIC  	=3D -Wl,-Bstatic
 XISISDYNAMIC 	=3D -Wl,-Bdynamic
 X
 Xifeq ($(findstring DEBUG, $(MODE)),DEBUG)
 X  ifeq ($(findstring CWD, $(MODE)),CWD)
 X    ISISSYSLIBS +=3D -lcwd_r -pthread
 X  endif
 Xendif
 X
 X#-----------------------------------------------------------------------=
 ----
 X# Shared library options
 X#-----------------------------------------------------------------------=
 ----
 XISISSHAREDFLAGS =3D $(ISISLDFLAGS) -shared
 XISISSHAREDON    =3D -Wl,-whole-archive=20
 XISISSHAREDOFF   =3D -Wl,-no-whole-archive
 XISISARFLAGS     =3D
 X
 X#-----------------------------------------------------------------------=
 ----
 X# Set up local library designations
 X#-----------------------------------------------------------------------=
 ----
 XISIS3LOCAL  	?=3D $(LOCALBASE)
 XISIS3SYSINC 	?=3D $(ISIS3LOCAL)/include
 XISIS3SYSLIB 	?=3D $(ISIS3LOCAL)/lib
 XISIS3CONTRIB	?=3D=20
 X
 X#-----------------------------------------------------------------------=
 ----
 X# Set up for cwd
 X#-----------------------------------------------------------------------=
 ----
 XCWDINCDIR 	=3D -D_THREAD_SAFE -pthread -I$(ISIS3LOCAL)/include/libcwd
 XCWDLIBDIR 	=3D -L$(ISIS3LOCAL)/lib
 XCWDLIB    	=3D -lcwd
 X
 X
 X#-----------------------------------------------------------------------=
 ----
 X# Set up for Qt on FreeBSD platform.
 X# Make environment and settings of CPPFLAGS are done via the ports
 X# framework.
 X#-----------------------------------------------------------------------=
 ----
 XQTFLAGS 	+=3D $(QTCPPFLAGS) -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED
 X#
 XQTDIR	  	=3D $(QT_PREFIX)
 X#
 XQTINCDIR=3D 	-I$(QMAKESPEC)
 XQTINCDIR+=3D 	-I$(QT_INCDIR)/Qt
 XQTINCDIR+=3D 	-I$(QT_INCDIR)/QtCore
 XQTINCDIR+=3D 	-I$(QT_INCDIR)/QtAssistant
 XQTINCDIR+=3D 	-I$(QT_INCDIR)/QtGui
 XQTINCDIR+=3D 	-I$(QT_INCDIR)/QtNetwork
 XQTINCDIR+=3D 	-I$(QT_INCDIR)/QtOpenGL
 XQTINCDIR+=3D 	-I$(QT_INCDIR)/QtScript
 XQTINCDIR+=3D 	-I$(QT_INCDIR)/QtScriptTools
 XQTINCDIR+=3D 	-I$(QT_INCDIR)/QtSql
 XQTINCDIR+=3D 	-I$(QT_INCDIR)/QtSvg
 XQTINCDIR+=3D 	-I$(QT_INCDIR)/QtTest
 XQTINCDIR+=3D 	-I$(QT_INCDIR)/QtWebKit
 XQTINCDIR+=3D 	-I$(QT_INCDIR)/QtXml
 XQTINCDIR+=3D 	-I$(QT_INCDIR)/QtXmlPatterns
 X
 X#QTINCDIR        +=3D -I$(ISIS3LOCAL)/share/qt4/mkspecs/default
 X#QTINCDIR 	+=3D -I$(ISIS3LOCAL)/include/qt4
 X
 X#
 X# Set by toplevel port's Makefile
 X#
 XQTLIBDIR        	=3D -L$(QT_LIBDIR)
 X#
 X#QTLIB           	=3D $(QTCFGLIBS)
 XQTLIB           	=3D $(QTCFGLIBS) -lQtXmlPatterns -lQtXml -lQtNetwork -l=
 QtSql -lQtGui -lQtCore -lQtSvg -lQtTest -lQtOpenGL -lQtWebKit
 X#
 XQTOPENGL        	=3D -lOpenGL -lAGL
 X#
 X#-----------------------------------------------------------------------=
 ----
 X# Setup Qt4 moc compiler: should be provided by the ENV
 X#-----------------------------------------------------------------------=
 ----
 X#MOC          	=3D $(ISIS3LOCAL)/bin/moc-qt4
 XMOCDEFINES   	+=3D $(QTFLAGS)
 XMOCDEFINES   	+=3D $(QTINCDIR)
 X
 X#-----------------------------------------------------------------------=
 ----
 X# Setup Qt4 uic compiler: should be provided by the ENV
 X#-----------------------------------------------------------------------=
 ----
 X#UIC             =3D $(ISIS3LOCAL)/bin/uic-qt4
 XUICDEFINES      +=3D $(QTCPPFLAGS)
 XUICDEFINES      +=3D $(QTINCDIR)
 X
 X
 X#-----------------------------------------------------------------------=
 ----
 X# Setup Qt4 qmake=20
 X#-----------------------------------------------------------------------=
 ----
 X#QMAKE		=3D $(ISIS3LOCAL)/bin/qmake-qt4
 X
 X#-----------------------------------------------------------------------=
 ----
 X# Setup Qt4 rcc compiler
 X#-----------------------------------------------------------------------=
 ----
 X#RCC		=3D $(ISIS3LOCAL)/bin/rcc
 X
 X#-----------------------------------------------------------------------=
 ----
 X# Set up for Qwt
 X#-----------------------------------------------------------------------=
 ----
 XQWTINCDIR	=3D -D_THREAD_SAFE -pthread -I$(ISIS3LOCAL)/include/qwt6
 XQWTLIBDIR 	=3D -L$(ISIS3LOCAL)/lib
 XQWTLIB    	=3D -lqwt6
 X
 X#-----------------------------------------------------------------------=
 ----
 X# Set up for Xerces=20
 X#-----------------------------------------------------------------------=
 ----
 XXERCESINCDIR 	=3D `pkg-config --cflags xerces-c`
 XXERCESLIBDIR 	=3D `pkg-config --libs-only-L xerces-c`
 XXERCESLIB    	=3D `pkg-config --libs-only-l xerces-c`
 X
 X#-----------------------------------------------------------------------=
 ----
 X# Set up for Tiff
 X#-----------------------------------------------------------------------=
 ----
 XTIFFINCDIR =3D -I$(ISIS3LOCAL)/include
 XTIFFLIBDIR =3D -L$(ISIS3LOCAL)/lib
 XTIFFLIB    =3D -ltiff
 X
 X#-----------------------------------------------------------------------=
 ----
 X# Set up for naif
 X# This is a FreeBSD specific setting of a specific port
 X# not published yet.
 X#-----------------------------------------------------------------------=
 ----
 XNAIFINCDIR 	=3D -I$(ISIS3LOCAL)/include/naif
 XNAIFLIBDIR 	=3D -L$(ISIS3LOCAL)/lib/
 XNAIFLIB    	=3D -lcspice
 X
 X#-----------------------------------------------------------------------=
 ----
 X# Set up for TNT
 X#-----------------------------------------------------------------------=
 ----
 XTNTINCDIR 	=3D -I$(ISIS3LOCAL)/include/tnt
 XTNTLIBDIR 	=3D
 XTNTLIB    	=3D=20
 X
 X#-----------------------------------------------------------------------=
 ----
 X# Set up for JAMA
 X#-----------------------------------------------------------------------=
 ----
 XJAMAINCDIR 	=3D $(TNTINCDIR)
 XJAMALIBDIR 	=3D $(TNTLIBDIR)
 XJAMALIB    	=3D $(TNTLIB)=20
 X
 X#-----------------------------------------------------------------------=
 ----
 X# Set up for GEOS
 X#-----------------------------------------------------------------------=
 ----
 XGEOSINCDIR 	=3D -D_THREAD_SAFE -pthread -I$(ISIS3LOCAL)/include/geos
 XGEOSLIBDIR 	=3D -L$(ISIS3LOCAL)/lib
 XGEOSLIB    	=3D -lgeos
 X
 X#-----------------------------------------------------------------------=
 ----
 X# Set up for the GNU Scientific Library (GSL).  Note that this setup
 X# suppports include patterns such as <gsl/gsl_errno.h>.  With this
 X# format, any other include spec that points to the general include
 X# directory, such as GEOS, will suffice.  Therefore, an explicit
 X# include directive is ommitted but provided as an empty reference
 X# in cases where it may be located elsewhere.  This also goes for the
 X# library reference.
 X#-----------------------------------------------------------------------=
 ----
 XGSLINCDIR 	=3D -D_THREAD_SAFE -pthread -I$(ISIS3LOCAL)/include/gsl
 XGSLLIBDIR 	=3D -L$(ISIS3LOCAL)/lib
 XGSLLIB    	=3D -lgsl -lgslcblas
 X
 X#-----------------------------------------------------------------------=
 ----
 X# Set up for X11
 X#-----------------------------------------------------------------------=
 ----
 XX11INCDIR =3D
 XX11LIBDIR =3D
 XX11LIB    =3D -lX11
 X
 X#-----------------------------------------------------------------------=
 ----
 X# Set up for GMM
 X#-----------------------------------------------------------------------=
 ----
 XGMMINCDIR 	=3D -D_THREAD_SAFE -I$(ISIS3LOCAL)/include
 XGMMLIBDIR 	=3D
 XGMMLIB    	=3D=20
 X
 X#-----------------------------------------------------------------------=
 ----
 X# Set up for SuperLU
 X#-----------------------------------------------------------------------=
 ----
 XSUPERLUINCDIR 	=3D -D_THREAD_SAFE -pthread -I$(ISIS3LOCAL)/include/super=
 lu
 XSUPERLULIBDIR 	=3D -L$(ISIS3LOCAL)/lib
 XSUPERLULIB    	=3D -lsuperlu -lblas
 X
 X#-----------------------------------------------------------------------=
 ----
 X# Set up for Google Protocol Buffers (ProtoBuf)
 X#-----------------------------------------------------------------------=
 ----
 XPROTOBUFINCDIR 	=3D `pkg-config --cflags protobuf`
 XPROTOBUFLIBDIR 	=3D `pkg-config --libs-only-L protobuf`
 XPROTOBUFLIB 	=3D `pkg-config --libs-only-l protobuf`
 X
 X#-----------------------------------------------------------------------=
 ----
 X# Set up for kakadu
 X# The Kakadu library is proprietary. The source files cannot be distribu=
 ted
 X# with ISIS3. If you need to rebuild ISIS3 on your system, then you will=
 
 X# need to modify the lines below that pertain to the location of the
 X# header files and library on your system. The compilation flag, ENABLEJ=
 P2K,
 X# should be set to true if you are building with the Kakadu library and
 X# you want to use the JPEG2000 specific code in the ISIS3 system. Otherw=
 ise,
 X# set the ENABLEJP2K flag to false.
 X#-----------------------------------------------------------------------=
 ----
 Xifdef	DENABLEJP2K
 Xifeq	$( $HOST_ARCH, FreeBSD )
 XKAKADUINCDIR	=3D -I$(ISIS3LOCAL)/include/
 XKAKADULIBDIR	=3D -L$(ISIS3LOCAL)/lib
 XKAKADULIB	=3D -lopenjpeg -llibecwj2
 Xelse
 XKAKADUINCDIR 	=3D -I$(ISIS3LOCAL)/include/kakadu/
 XKAKADULIBDIR 	=3D -L$(ISIS3LOCAL)/lib
 XKAKADULIB	=3D -lkdu_a63R
 Xendif
 Xelse
 XKAKADUINCDIR	=3D -I$(ISIS3LOCAL)/include/kakadu/
 XKAKADULIBDIR	=3D -L$(ISIS3LOCAL)/lib
 XKAKADULIB	=3D
 Xendif
 X
 X#-----------------------------------------------------------------------=
 ----
 X# Set up for BOOST
 X#-----------------------------------------------------------------------=
 ----
 XBOOSTINCDIR 	=3D -D_THREAD_SAFE -pthread -I$(ISIS3LOCAL)/include/boost/
 XBOOSTLIBDIR 	=3D
 XBOOSTLIB    	=3D
 X#BOOSTLIBDIR 	=3D -L$(ISIS3LOCAL)/lib
 X#BOOSTLIB    	=3D -lboost_date_time -lboost_filesystem -lboost_graph -lb=
 oost_math_c99f \
 X#              	-lboost_math_c99l -lboost_math_c99 -lboost_math_tr1f -lb=
 oost_math_tr1l \
 X#              	-lboost_math_tr1 -lboost_prg_exec_monitor -lboost_progra=
 m_options \
 X#              	-lboost_regex -lboost_serialization -lboost_signals -lbo=
 ost_system \
 X#              	-lboost_thread -lboost_unit_test_framework -lboost_wave =
 -lboost_wserialization
 X
 X#-----------------------------------------------------------------------=
 ----
 X# Set up for Cholmod libraries=20
 X#-----------------------------------------------------------------------=
 ----
 XCHOLMODINCDIR 	=3D -D_THREAD_SAFE -pthread -I$(ISIS3LOCAL)/include
 XCHOLMODLIBDIR 	=3D -L$(ISIS3LOCAL)/lib
 XCHOLMODLIB    	=3D -lcholmod -lamd -lcolamd -llapack
 ef5ccb07cd7b4adb9d25495aa2436e7a
 echo x - isis3/files/patch-src-base-apps-equalizer-equalizer.cpp
 sed 's/^X//' >isis3/files/patch-src-base-apps-equalizer-equalizer.cpp << =
 '70972c341f22baadebb1285f3388011b'
 X--- src/base/apps/equalizer/equalizer.cpp.orig	2011-11-09 19:16:35.00000=
 0000 +0100
 X+++ src/base/apps/equalizer/equalizer.cpp	2011-11-09 19:17:22.000000000 =
 +0100
 X@@ -2,7 +2,11 @@
 X=20
 X #include <cmath>
 X=20
 X+#ifdef __FreeBSD__
 X+#include "tnt/jama_svd.h"
 X+#else
 X #include "jama/jama_svd.h"
 X+#endif
 X #include "tnt/tnt_array2d.h"
 X=20
 X #include "CubeAttribute.h"
 70972c341f22baadebb1285f3388011b
 echo x - isis3/files/patch-src-base-objs-LeastSquares-LeastSquares.cpp
 sed 's/^X//' >isis3/files/patch-src-base-objs-LeastSquares-LeastSquares.c=
 pp << '00c53ae950a49487ec911bbc7fca8489'
 X--- ./src/base/objs/LeastSquares/LeastSquares.cpp.orig	2011-03-26 23:39:=
 56.000000000 +0100
 X+++ ./src/base/objs/LeastSquares/LeastSquares.cpp	2012-01-30 22:39:17.00=
 0000000 +0100
 X@@ -20,8 +20,13 @@
 X  *   http://isis.astrogeology.usgs.gov, and the USGS privacy and discla=
 imers on
 X  *   http://www.usgs.gov/privacy.html.
 X  */
 X+#if defined(__FreeBSD__)
 X+#include "tnt/jama_svd.h"
 X+#include "tnt/jama_qr.h"
 X+#else
 X #include "jama/jama_svd.h"
 X #include "jama/jama_qr.h"
 X+#endif
 X=20
 X #if !defined(__sun__)
 X #include "gmm/gmm_superlu_interface.h"
 00c53ae950a49487ec911bbc7fca8489
 echo x - isis3/files/patch-src-base-objs-Matrix-Matrix.cpp
 sed 's/^X//' >isis3/files/patch-src-base-objs-Matrix-Matrix.cpp << '7c80a=
 8b7ea27e5a7ce0fbce6275c8bf0'
 X--- src/base/objs/Matrix/Matrix.cpp.orig	2010-07-03 03:34:37.000000000 +=
 0200
 X+++ src/base/objs/Matrix/Matrix.cpp	2012-01-30 22:57:07.000000000 +0100
 X@@ -23,9 +23,16 @@
 X #include <vector>
 X #include <iostream>
 X #include <string>
 X+
 X+#ifdef __FreeBSD__
 X+#include "tnt/jama_svd.h"
 X+#include "tnt/jama_eig.h"
 X+#include "tnt/jama_lu.h"
 X+#else
 X #include "jama/jama_svd.h"
 X #include "jama/jama_eig.h"
 X #include "jama/jama_lu.h"
 X+#endif
 X=20
 X #include "Matrix.h"
 X #include "iException.h"
 7c80a8b7ea27e5a7ce0fbce6275c8bf0
 echo x - isis3/files/patch-config-Makefile
 sed 's/^X//' >isis3/files/patch-config-Makefile << 'b4b92d5a202b51a7789eb=
 31e93d892d8'
 X--- config/Makefile.orig	2012-06-16 18:04:26.000000000 +0200
 X+++ config/Makefile	2012-06-16 18:15:23.000000000 +0200
 X@@ -8,18 +8,19 @@
 X=20
 X ####### Compiler, tools and options
 X=20
 X-CC            =3D gcc
 X-CXX           =3D g++
 X+CC            ?=3D clang
 X+CXX           ?=3D clang++
 X DEFINES       =3D -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED
 X-CFLAGS        =3D -m64 -pipe -O2 -Wall -W -D_REENTRANT $(DEFINES)
 X-CXXFLAGS      =3D -m64 -pipe -O2 -Wall -W -D_REENTRANT $(DEFINES)
 X-INCPATH       =3D -I../../../local/v002/mkspecs/default -I. -I../../../=
 local/v002/include/qt/qt4.8.0/QtCore -I../../../local/v002/include/qt/qt4=
 =2E8.0/QtGui -I../../../local/v002/include/qt/qt4.8.0 -I.
 X-LINK          =3D g++
 X-LFLAGS        =3D -m64 -Wl,-O1 -Wl,-rpath,/usgs/pkgs/local/v002/lib
 X-LIBS          =3D $(SUBLIBS)  -L/usgs/pkgs/local/v002//lib -lQtGui -L/u=
 sgs/pkgs/local/v002//lib -L/usr/X11R6/lib64 -lQtCore -lpthread=20
 X+CFLAGS        +=3D -Wall -W -D_REENTRANT $(DEFINES)
 X+CXXFLAGS      +=3D -Wall -W -D_REENTRANT $(DEFINES)
 X+#INCPATH       =3D -I../../../local/v002/mkspecs/default -I. -I../../..=
 /local/v002/include/qt/qt4.8.0/QtCore -I../../../local/v002/include/qt/qt=
 4.8.0/QtGui -I../../../local/v002/include/qt/qt4.8.0 -I.
 X+INCPATH       ?=3D ${CPPFLAGS} -I.
 X+LINK          ?=3D clang++
 X+LFLAGS        =3D ${LDFLAGS}
 X+LIBS          =3D $(SUBLIBS)  -lQtGui -lQtCore -lpthread=20
 X AR            =3D ar cqs
 X RANLIB        =3D=20
 X-QMAKE         =3D /usgs/pkgs/local/v002/bin/qmake
 X+QMAKE         =3D qmake-qt4
 X TAR           =3D tar -cf
 X COMPRESS      =3D gzip -9f
 X COPY          =3D cp -f
 X@@ -45,31 +46,7 @@
 X=20
 X SOURCES       =3D =20
 X OBJECTS       =3D=20
 X-DIST          =3D ../../../local/v002/mkspecs/common/unix.conf \
 X-		../../../local/v002/mkspecs/common/linux.conf \
 X-		../../../local/v002/mkspecs/common/gcc-base.conf \
 X-		../../../local/v002/mkspecs/common/gcc-base-unix.conf \
 X-		../../../local/v002/mkspecs/common/g++-base.conf \
 X-		../../../local/v002/mkspecs/common/g++-unix.conf \
 X-		../../../local/v002/mkspecs/qconfig.pri \
 X-		../../../local/v002/mkspecs/modules/qt_webkit_version.pri \
 X-		../../../local/v002/mkspecs/features/qt_functions.prf \
 X-		../../../local/v002/mkspecs/features/qt_config.prf \
 X-		../../../local/v002/mkspecs/features/exclusive_builds.prf \
 X-		../../../local/v002/mkspecs/features/default_pre.prf \
 X-		../../../local/v002/mkspecs/features/release.prf \
 X-		../../../local/v002/mkspecs/features/default_post.prf \
 X-		../../../local/v002/mkspecs/features/unix/gdb_dwarf_index.prf \
 X-		../../../local/v002/mkspecs/features/warn_on.prf \
 X-		../../../local/v002/mkspecs/features/qt.prf \
 X-		../../../local/v002/mkspecs/features/unix/thread.prf \
 X-		../../../local/v002/mkspecs/features/moc.prf \
 X-		../../../local/v002/mkspecs/features/resources.prf \
 X-		../../../local/v002/mkspecs/features/uic.prf \
 X-		../../../local/v002/mkspecs/features/yacc.prf \
 X-		../../../local/v002/mkspecs/features/lex.prf \
 X-		../../../local/v002/mkspecs/features/include_source_dir.prf \
 X-		config.pro
 X+DIST          =3D config.pro
 X QMAKE_TARGET  =3D isis.conf
 X DESTDIR       =3D $(ISISROOT)/make/
 X TARGET        =3D $(ISISROOT)/make/isis.conf
 X@@ -102,59 +79,10 @@
 X 	@$(CHK_DIR_EXISTS) $(ISISROOT)/make/ || $(MKDIR) $(ISISROOT)/make/=20
 X 	$(LINK) $(LFLAGS) -o $(TARGET) $(OBJECTS) $(OBJCOMP) $(LIBS)
 X=20
 X-Makefile: config.pro  ../../../local/v002/mkspecs/default/qmake.conf ..=
 /../../local/v002/mkspecs/common/unix.conf \
 X-		../../../local/v002/mkspecs/common/linux.conf \
 X-		../../../local/v002/mkspecs/common/gcc-base.conf \
 X-		../../../local/v002/mkspecs/common/gcc-base-unix.conf \
 X-		../../../local/v002/mkspecs/common/g++-base.conf \
 X-		../../../local/v002/mkspecs/common/g++-unix.conf \
 X-		../../../local/v002/mkspecs/qconfig.pri \
 X-		../../../local/v002/mkspecs/modules/qt_webkit_version.pri \
 X-		../../../local/v002/mkspecs/features/qt_functions.prf \
 X-		../../../local/v002/mkspecs/features/qt_config.prf \
 X-		../../../local/v002/mkspecs/features/exclusive_builds.prf \
 X-		../../../local/v002/mkspecs/features/default_pre.prf \
 X-		../../../local/v002/mkspecs/features/release.prf \
 X-		../../../local/v002/mkspecs/features/default_post.prf \
 X-		../../../local/v002/mkspecs/features/unix/gdb_dwarf_index.prf \
 X-		../../../local/v002/mkspecs/features/warn_on.prf \
 X-		../../../local/v002/mkspecs/features/qt.prf \
 X-		../../../local/v002/mkspecs/features/unix/thread.prf \
 X-		../../../local/v002/mkspecs/features/moc.prf \
 X-		../../../local/v002/mkspecs/features/resources.prf \
 X-		../../../local/v002/mkspecs/features/uic.prf \
 X-		../../../local/v002/mkspecs/features/yacc.prf \
 X-		../../../local/v002/mkspecs/features/lex.prf \
 X-		../../../local/v002/mkspecs/features/include_source_dir.prf \
 X-		/usgs/pkgs/local/v002/lib/libQtGui.prl \
 X-		/usgs/pkgs/local/v002/lib/libQtCore.prl
 X+Makefile: config.pro
 X+	=09
 X 	$(QMAKE) -o Makefile config.pro
 X-../../../local/v002/mkspecs/common/unix.conf:
 X-../../../local/v002/mkspecs/common/linux.conf:
 X-../../../local/v002/mkspecs/common/gcc-base.conf:
 X-../../../local/v002/mkspecs/common/gcc-base-unix.conf:
 X-../../../local/v002/mkspecs/common/g++-base.conf:
 X-../../../local/v002/mkspecs/common/g++-unix.conf:
 X-../../../local/v002/mkspecs/qconfig.pri:
 X-../../../local/v002/mkspecs/modules/qt_webkit_version.pri:
 X-../../../local/v002/mkspecs/features/qt_functions.prf:
 X-../../../local/v002/mkspecs/features/qt_config.prf:
 X-../../../local/v002/mkspecs/features/exclusive_builds.prf:
 X-../../../local/v002/mkspecs/features/default_pre.prf:
 X-../../../local/v002/mkspecs/features/release.prf:
 X-../../../local/v002/mkspecs/features/default_post.prf:
 X-../../../local/v002/mkspecs/features/unix/gdb_dwarf_index.prf:
 X-../../../local/v002/mkspecs/features/warn_on.prf:
 X-../../../local/v002/mkspecs/features/qt.prf:
 X-../../../local/v002/mkspecs/features/unix/thread.prf:
 X-../../../local/v002/mkspecs/features/moc.prf:
 X-../../../local/v002/mkspecs/features/resources.prf:
 X-../../../local/v002/mkspecs/features/uic.prf:
 X-../../../local/v002/mkspecs/features/yacc.prf:
 X-../../../local/v002/mkspecs/features/lex.prf:
 X-../../../local/v002/mkspecs/features/include_source_dir.prf:
 X-/usgs/pkgs/local/v002/lib/libQtGui.prl:
 X-/usgs/pkgs/local/v002/lib/libQtCore.prl:
 X+
 X qmake:  FORCE
 X 	@$(QMAKE) -o Makefile config.pro
 X=20
 b4b92d5a202b51a7789eb31e93d892d8
 echo x - isis3/files/patch-src-base-objs-SpiceRotation-SpiceRotation.cpp
 sed 's/^X//' >isis3/files/patch-src-base-objs-SpiceRotation-SpiceRotation=
 =2Ecpp << 'b69f20bf8d8a5620558fd2a1c9399bd5'
 X--- ./src/base/objs/SpiceRotation/SpiceRotation.cpp.orig	2012-09-24 21:5=
 7:17.000000000 +0200
 X+++ ./src/base/objs/SpiceRotation/SpiceRotation.cpp	2012-09-24 21:57:50.=
 000000000 +0200
 X@@ -586,12 +586,12 @@
 X     if (p_source =3D=3D PolyFunctionOverSpice) {
 X       LineCache(tableName);
 X=20
 X-      std::cout << "Full cache size is " << p_cache.size() << endl;
 X+      std::cout << "Full cache size is " << p_cache.size() << std::endl=
 ;
 X=20
 X       p_minimizeCache =3D Yes;
 X       LoadTimeCache();
 X=20
 X-      std::cout << "Minimized cache size is " << p_cache.size() << endl=
 ;
 X+      std::cout << "Minimized cache size is " << p_cache.size() << std:=
 :endl;
 X     }
 X=20
 X     // Load the list of rotations and their corresponding times
 b69f20bf8d8a5620558fd2a1c9399bd5
 echo x - isis3/files/patch-src-base-objs-CollectorMap-CollectorMap.h
 sed 's/^X//' >isis3/files/patch-src-base-objs-CollectorMap-CollectorMap.h=
  << 'c16aa2167753032ff749aa54dfd7f403'
 X--- ./src/base/objs/CollectorMap/CollectorMap.h.orig	2012-09-25 01:32:30=
 =2E000000000 +0200
 X+++ ./src/base/objs/CollectorMap/CollectorMap.h	2012-09-25 01:36:09.0000=
 00000 +0200
 X@@ -696,7 +696,7 @@
 X=20
 X         CollectorIter Itr2 =3D _list.upper_bound(key);
 X         while(Itr1 !=3D Itr2) {
 X-          destroy(&Itr1->second);
 X+          this->destroy(&Itr1->second);
 X           ++Itr1;
 X         }
 X         return (_list.erase(key));
 X@@ -753,7 +753,7 @@
 X       void selfDestruct() {
 X         CollectorIter itr;
 X         for(itr =3D _list.begin() ; itr !=3D _list.end() ; itr++) {
 X-          destroy(&itr->second);
 X+          this->destroy(&itr->second);
 X         }
 X         _list.clear();
 X       }
 c16aa2167753032ff749aa54dfd7f403
 echo x - isis3/distinfo
 sed 's/^X//' >isis3/distinfo << 'a088da048508577e5eeb49b32d1c8af5'
 XSHA256 (isis3-3.4.1.tar.gz) =3D 773e7bc22ad1d716f581f4eac4a14c645c472242=
 d89ab6d1241be78df7aa780e
 XSIZE (isis3-3.4.1.tar.gz) =3D 171494570
 a088da048508577e5eeb49b32d1c8af5
 echo x - isis3/pkg-descr
 sed 's/^X//' >isis3/pkg-descr << 'a55f3cf3fe7966bde184bb2a483f0e22'
 XISIS3 - Integrated Software for Imagers and Spectrometers Version 3
 X
 XIsis, an image processing software package. The focus of the software=20
 Xis to manipulate imagery collected by current and past NASA planetary=20
 Xmissions sent to Mars, Jupiter, Saturn, and other solar system bodies.
 XFor more information on the software see
 Xhttp://isis.astrogeology.usgs.gov
 X
 a55f3cf3fe7966bde184bb2a483f0e22
 echo x - isis3/pkg-plist
 sed 's/^X//' >isis3/pkg-plist << '65b134f0d82fc23433717f57e8aa4397'
 Xisis/3.4.1/IsisPreferences
 Xisis/3.4.1/bin/algebra
 Xisis/3.4.1/bin/apollo2isis
 Xisis/3.4.1/bin/apollocal
 Xisis/3.4.1/bin/apollofindrx
 Xisis/3.4.1/bin/apollopaninit
 Xisis/3.4.1/bin/apollopanstitcher
 Xisis/3.4.1/bin/apolloremrx
 Xisis/3.4.1/bin/apollowarp
 Xisis/3.4.1/bin/appjit
 Xisis/3.4.1/bin/ascii2isis
 Xisis/3.4.1/bin/automos
 Xisis/3.4.1/bin/autoregtemplate
 Xisis/3.4.1/bin/autoseed
 Xisis/3.4.1/bin/bandnorm
 Xisis/3.4.1/bin/bandtrim
 Xisis/3.4.1/bin/bit2bit
 Xisis/3.4.1/bin/blend
 Xisis/3.4.1/bin/blobdump
 Xisis/3.4.1/bin/butterworth
 Xisis/3.4.1/bin/cam2cam
 Xisis/3.4.1/bin/cam2map
 Xisis/3.4.1/bin/caminfo
 Xisis/3.4.1/bin/campt
 Xisis/3.4.1/bin/camrange
 Xisis/3.4.1/bin/camstats
 Xisis/3.4.1/bin/camtrim
 Xisis/3.4.1/bin/cathist
 Xisis/3.4.1/bin/catlab
 Xisis/3.4.1/bin/catoriglab
 Xisis/3.4.1/bin/circle
 Xisis/3.4.1/bin/ciss2isis
 Xisis/3.4.1/bin/cisscal
 Xisis/3.4.1/bin/ckwriter
 Xisis/3.4.1/bin/clem2isis
 Xisis/3.4.1/bin/clemhirescal
 Xisis/3.4.1/bin/clemnircal
 Xisis/3.4.1/bin/clemnirclean
 Xisis/3.4.1/bin/clemnirnoise
 Xisis/3.4.1/bin/clemuvviscal
 Xisis/3.4.1/bin/cnet2mat
 Xisis/3.4.1/bin/cnetadd
 Xisis/3.4.1/bin/cnetbin2pvl
 Xisis/3.4.1/bin/cnetcheck
 Xisis/3.4.1/bin/cnetdiff
 Xisis/3.4.1/bin/cnetedit
 Xisis/3.4.1/bin/cneteditor
 Xisis/3.4.1/bin/cnetextract
 Xisis/3.4.1/bin/cnethist
 Xisis/3.4.1/bin/cnetmerge
 Xisis/3.4.1/bin/cnetnewradii
 Xisis/3.4.1/bin/cnetpvl2bin
 Xisis/3.4.1/bin/cnetref
 Xisis/3.4.1/bin/cnetsplit
 Xisis/3.4.1/bin/cnetstats
 Xisis/3.4.1/bin/cnettable
 Xisis/3.4.1/bin/cnetwinnow
 Xisis/3.4.1/bin/copylabel
 Xisis/3.4.1/bin/coreg
 Xisis/3.4.1/bin/cosi
 Xisis/3.4.1/bin/crism2isis
 Xisis/3.4.1/bin/crop
 Xisis/3.4.1/bin/cropspecial
 Xisis/3.4.1/bin/csspckgen
 Xisis/3.4.1/bin/ctxcal
 Xisis/3.4.1/bin/ctxevenodd
 Xisis/3.4.1/bin/cubeatt
 Xisis/3.4.1/bin/cubeavg
 Xisis/3.4.1/bin/cubediff
 Xisis/3.4.1/bin/cubefunc
 Xisis/3.4.1/bin/cubeit
 Xisis/3.4.1/bin/cubenorm
 Xisis/3.4.1/bin/dawnfc2isis
 Xisis/3.4.1/bin/dawnvir2isis
 Xisis/3.4.1/bin/ddd2isis
 Xisis/3.4.1/bin/decorstretch
 Xisis/3.4.1/bin/deltack
 Xisis/3.4.1/bin/dempack
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 Xisis/3.4.1/include/PlotCurve.h
 Xisis/3.4.1/include/PlotWindow.h
 Xisis/3.4.1/include/PlotWindowBestFitDialog.h
 Xisis/3.4.1/include/Plugin.h
 Xisis/3.4.1/include/PointPerspective.h
 Xisis/3.4.1/include/PolarStereographic.h
 Xisis/3.4.1/include/PolygonSeeder.h
 Xisis/3.4.1/include/PolygonSeederFactory.h
 Xisis/3.4.1/include/PolygonTools.h
 Xisis/3.4.1/include/PolynomialBivariate.h
 Xisis/3.4.1/include/PolynomialUnivariate.h
 Xisis/3.4.1/include/Portal.h
 Xisis/3.4.1/include/Preference.h
 Xisis/3.4.1/include/PrincipalComponentAnalysis.h
 Xisis/3.4.1/include/Process.h
 Xisis/3.4.1/include/ProcessByBoxcar.h
 Xisis/3.4.1/include/ProcessByBrick.h
 Xisis/3.4.1/include/ProcessByLine.h
 Xisis/3.4.1/include/ProcessByQuickFilter.h
 Xisis/3.4.1/include/ProcessBySample.h
 Xisis/3.4.1/include/ProcessBySpectra.h
 Xisis/3.4.1/include/ProcessByTile.h
 Xisis/3.4.1/include/ProcessExport.h
 Xisis/3.4.1/include/ProcessExportPds.h
 Xisis/3.4.1/include/ProcessGroundPolygons.h
 Xisis/3.4.1/include/ProcessImport.h
 Xisis/3.4.1/include/ProcessImportPds.h
 Xisis/3.4.1/include/ProcessImportVicar.h
 Xisis/3.4.1/include/ProcessMapMosaic.h
 Xisis/3.4.1/include/ProcessMosaic.h
 Xisis/3.4.1/include/ProcessPolygons.h
 Xisis/3.4.1/include/ProcessRubberSheet.h
 Xisis/3.4.1/include/ProfileDialog.h
 Xisis/3.4.1/include/ProgramLauncher.h
 Xisis/3.4.1/include/Progress.h
 Xisis/3.4.1/include/ProgressBar.h
 Xisis/3.4.1/include/Projection.h
 Xisis/3.4.1/include/ProjectionFactory.h
 Xisis/3.4.1/include/PushFrameCamera.h
 Xisis/3.4.1/include/PushFrameCameraDetectorMap.h
 Xisis/3.4.1/include/PushFrameCameraGroundMap.h
 Xisis/3.4.1/include/Pvl.h
 Xisis/3.4.1/include/PvlContainer.h
 Xisis/3.4.1/include/PvlEditDialog.h
 Xisis/3.4.1/include/PvlFormat.h
 Xisis/3.4.1/include/PvlFormatPds.h
 Xisis/3.4.1/include/PvlGroup.h
 Xisis/3.4.1/include/PvlKeyword.h
 Xisis/3.4.1/include/PvlObject.h
 Xisis/3.4.1/include/PvlSequence.h
 Xisis/3.4.1/include/PvlToken.h
 Xisis/3.4.1/include/PvlTokenizer.h
 Xisis/3.4.1/include/PvlTranslationManager.h
 Xisis/3.4.1/include/PvlTranslationTable.h
 Xisis/3.4.1/include/QHistogram.h
 Xisis/3.4.1/include/QIsisApplication.h
 Xisis/3.4.1/include/QStretch.h
 Xisis/3.4.1/include/QtExporter.h
 Xisis/3.4.1/include/QtImporter.h
 Xisis/3.4.1/include/Quaternion.h
 Xisis/3.4.1/include/QuickFilter.h
 Xisis/3.4.1/include/RadarCamera.h
 Xisis/3.4.1/include/RadarGroundMap.h
 Xisis/3.4.1/include/RadarGroundRangeMap.h
 Xisis/3.4.1/include/RadarPulseMap.h
 Xisis/3.4.1/include/RadarSkyMap.h
 Xisis/3.4.1/include/RadarSlantRangeMap.h
 Xisis/3.4.1/include/RadialDistortionMap.h
 Xisis/3.4.1/include/Ransac.h
 Xisis/3.4.1/include/RawCubeChunk.h
 Xisis/3.4.1/include/Reduce.h
 Xisis/3.4.1/include/RegionalCachingAlgorithm.h
 Xisis/3.4.1/include/ReseauDistortionMap.h
 Xisis/3.4.1/include/RubberBandComboBox.h
 Xisis/3.4.1/include/RubberBandTool.h
 Xisis/3.4.1/include/SampleManager.h
 Xisis/3.4.1/include/SaveAsDialog.h
 Xisis/3.4.1/include/SawtoothStretchType.h
 Xisis/3.4.1/include/ScatterPlotAlarmConfigDialog.h
 Xisis/3.4.1/include/ScatterPlotConfigDialog.h
 Xisis/3.4.1/include/ScatterPlotData.h
 Xisis/3.4.1/include/ScatterPlotTool.h
 Xisis/3.4.1/include/ScatterPlotWindow.h
 Xisis/3.4.1/include/Selection.h
 Xisis/3.4.1/include/Sensor.h
 Xisis/3.4.1/include/SerialNumber.h
 Xisis/3.4.1/include/SerialNumberList.h
 Xisis/3.4.1/include/SessionLog.h
 Xisis/3.4.1/include/Shade.h
 Xisis/3.4.1/include/ShadeAtm.h
 Xisis/3.4.1/include/SimpleCylindrical.h
 Xisis/3.4.1/include/Sinusoidal.h
 Xisis/3.4.1/include/SmtkMatcher.h
 Xisis/3.4.1/include/SmtkPoint.h
 Xisis/3.4.1/include/SmtkStack.h
 Xisis/3.4.1/include/SocketThread.h
 Xisis/3.4.1/include/SparseBlockMatrix.h
 Xisis/3.4.1/include/SpatialPlotTool.h
 Xisis/3.4.1/include/SpecialPixel.h
 Xisis/3.4.1/include/SpecialPixelTool.h
 Xisis/3.4.1/include/SpectralPlotTool.h
 Xisis/3.4.1/include/SpectralPlotWindow.h
 Xisis/3.4.1/include/Spice.h
 Xisis/3.4.1/include/SpicePosition.h
 Xisis/3.4.1/include/SpiceRotation.h
 Xisis/3.4.1/include/SqlQuery.h
 Xisis/3.4.1/include/SqlRecord.h
 Xisis/3.4.1/include/SsiCamera.h
 Xisis/3.4.1/include/StandardDeviationOperator.h
 Xisis/3.4.1/include/StatCumProbDistDynCalc.h
 Xisis/3.4.1/include/Statistics.h
 Xisis/3.4.1/include/StatisticsTool.h
 Xisis/3.4.1/include/Stereo.h
 Xisis/3.4.1/include/StereoTool.h
 Xisis/3.4.1/include/StreamExporter.h
 Xisis/3.4.1/include/Stretch.h
 Xisis/3.4.1/include/StretchTool.h
 Xisis/3.4.1/include/StretchType.h
 Xisis/3.4.1/include/StripPolygonSeeder.h
 Xisis/3.4.1/include/SubArea.h
 Xisis/3.4.1/include/SunShadowTool.h
 Xisis/3.4.1/include/SurfaceModel.h
 Xisis/3.4.1/include/SurfacePoint.h
 Xisis/3.4.1/include/Tab.h
 Xisis/3.4.1/include/TabBar.h
 Xisis/3.4.1/include/Table.h
 Xisis/3.4.1/include/TableField.h
 Xisis/3.4.1/include/TableMainWindow.h
 Xisis/3.4.1/include/TableRecord.h
 Xisis/3.4.1/include/TaylorCameraDistortionMap.h
 Xisis/3.4.1/include/TextFile.h
 Xisis/3.4.1/include/ThemisIrCamera.h
 Xisis/3.4.1/include/ThemisIrDistortionMap.h
 Xisis/3.4.1/include/ThemisVisCamera.h
 Xisis/3.4.1/include/ThemisVisDistortionMap.h
 Xisis/3.4.1/include/TiffExporter.h
 Xisis/3.4.1/include/TiffImporter.h
 Xisis/3.4.1/include/TileManager.h
 Xisis/3.4.1/include/Tool.h
 Xisis/3.4.1/include/ToolPad.h
 Xisis/3.4.1/include/Topo.h
 Xisis/3.4.1/include/TopoAtm.h
 Xisis/3.4.1/include/TrackTool.h
 Xisis/3.4.1/include/Transform.h
 Xisis/3.4.1/include/TransverseMercator.h
 Xisis/3.4.1/include/UniqueIOCachingAlgorithm.h
 Xisis/3.4.1/include/UniversalGroundMap.h
 Xisis/3.4.1/include/UserInterface.h
 Xisis/3.4.1/include/UvvisCamera.h
 Xisis/3.4.1/include/VariableLineScanCameraDetectorMap.h
 Xisis/3.4.1/include/VecFilter.h
 Xisis/3.4.1/include/ViewportBuffer.h
 Xisis/3.4.1/include/ViewportBufferAction.h
 Xisis/3.4.1/include/ViewportBufferFill.h
 Xisis/3.4.1/include/ViewportBufferStretch.h
 Xisis/3.4.1/include/ViewportBufferTransform.h
 Xisis/3.4.1/include/ViewportMainWindow.h
 Xisis/3.4.1/include/ViewportMdiSubWindow.h
 Xisis/3.4.1/include/VikingCamera.h
 Xisis/3.4.1/include/VimsCamera.h
 Xisis/3.4.1/include/VimsGroundMap.h
 Xisis/3.4.1/include/VimsSkyMap.h
 Xisis/3.4.1/include/VoyagerCamera.h
 Xisis/3.4.1/include/WarningWidget.h
 Xisis/3.4.1/include/WindowTool.h
 Xisis/3.4.1/include/Workspace.h
 Xisis/3.4.1/include/WorldMapper.h
 Xisis/3.4.1/include/ZoomTool.h
 Xisis/3.4.1/include/iString.h
 Xisis/3.4.1/include/iTime.h
 Xisis/3.4.1/include/mocxtrack.h
 Xisis/3.4.1/lib/AtmosModel.plugin
 Xisis/3.4.1/lib/AutoReg.plugin
 Xisis/3.4.1/lib/Camera.plugin
 Xisis/3.4.1/lib/InterestOperator.plugin
 Xisis/3.4.1/lib/NormModel.plugin
 Xisis/3.4.1/lib/PhotoModel.plugin
 Xisis/3.4.1/lib/PolygonSeeder.plugin
 Xisis/3.4.1/lib/Projection.plugin
 Xisis/3.4.1/lib/libAdaptiveGruen.so
 Xisis/3.4.1/lib/libAlbedo.so
 Xisis/3.4.1/lib/libAlbedoAtm.so
 Xisis/3.4.1/lib/libAnisotropic1.so
 Xisis/3.4.1/lib/libAnisotropic2.so
 Xisis/3.4.1/lib/libApolloMetricCamera.so
 Xisis/3.4.1/lib/libApolloPanoramicCamera.so
 Xisis/3.4.1/lib/libCTXCamera.so
 Xisis/3.4.1/lib/libDawnFcCamera.so
 Xisis/3.4.1/lib/libDawnVirCamera.so
 Xisis/3.4.1/lib/libEquirectangular.so
 Xisis/3.4.1/lib/libForstnerOperator.so
 Xisis/3.4.1/lib/libGradientOperator.so
 Xisis/3.4.1/lib/libGridPolygonSeeder.so
 Xisis/3.4.1/lib/libHapke.so
 Xisis/3.4.1/lib/libHapkeAtm1.so
 Xisis/3.4.1/lib/libHapkeAtm2.so
 Xisis/3.4.1/lib/libHiresCamera.so
 Xisis/3.4.1/lib/libHiriseCamera.so
 Xisis/3.4.1/lib/libHrscCamera.so
 Xisis/3.4.1/lib/libIdealCamera.so
 Xisis/3.4.1/lib/libIsotropic1.so
 Xisis/3.4.1/lib/libIsotropic2.so
 Xisis/3.4.1/lib/libIssNACamera.so
 Xisis/3.4.1/lib/libIssWACamera.so
 Xisis/3.4.1/lib/libLambert.so
 Xisis/3.4.1/lib/libLambertAzimuthalEqualArea.so
 Xisis/3.4.1/lib/libLambertConformal.so
 Xisis/3.4.1/lib/libLimitPolygonSeeder.so
 Xisis/3.4.1/lib/libLoHighCamera.so
 Xisis/3.4.1/lib/libLoMediumCamera.so
 Xisis/3.4.1/lib/libLommelSeeliger.so
 Xisis/3.4.1/lib/libLroNarrowAngleCamera.so
 Xisis/3.4.1/lib/libLroWideAngleCamera.so
 Xisis/3.4.1/lib/libLunarAzimuthalEqualArea.so
 Xisis/3.4.1/lib/libLunarLambert.so
 Xisis/3.4.1/lib/libLunarLambertEmpirical.so
 Xisis/3.4.1/lib/libLunarLambertMcEwen.so
 Xisis/3.4.1/lib/libLwirCamera.so
 Xisis/3.4.1/lib/libMarciCamera.so
 Xisis/3.4.1/lib/libMariner10Camera.so
 Xisis/3.4.1/lib/libMaximumCorrelation.so
 Xisis/3.4.1/lib/libMdisCamera.so
 Xisis/3.4.1/lib/libMercator.so
 Xisis/3.4.1/lib/libMiniRF.so
 Xisis/3.4.1/lib/libMinimumDifference.so
 Xisis/3.4.1/lib/libMinnaert.so
 Xisis/3.4.1/lib/libMinnaertEmpirical.so
 Xisis/3.4.1/lib/libMixed.so
 Xisis/3.4.1/lib/libMocNarrowAngleCamera.so
 Xisis/3.4.1/lib/libMocWideAngleCamera.so
 Xisis/3.4.1/lib/libMoonAlbedo.so
 Xisis/3.4.1/lib/libMoravecOperator.so
 Xisis/3.4.1/lib/libNirCamera.so
 Xisis/3.4.1/lib/libNoNormalization.so
 Xisis/3.4.1/lib/libNoOperator.so
 Xisis/3.4.1/lib/libObliqueCylindrical.so
 Xisis/3.4.1/lib/libOrthographic.so
 Xisis/3.4.1/lib/libPointPerspective.so
 Xisis/3.4.1/lib/libPolarStereographic.so
 Xisis/3.4.1/lib/libShade.so
 Xisis/3.4.1/lib/libShadeAtm.so
 Xisis/3.4.1/lib/libSimpleCylindrical.so
 Xisis/3.4.1/lib/libSinusoidal.so
 Xisis/3.4.1/lib/libSsiCamera.so
 Xisis/3.4.1/lib/libStandardDeviationOperator.so
 Xisis/3.4.1/lib/libStripPolygonSeeder.so
 Xisis/3.4.1/lib/libThemisIrCamera.so
 Xisis/3.4.1/lib/libThemisVisCamera.so
 Xisis/3.4.1/lib/libTopo.so
 Xisis/3.4.1/lib/libTopoAtm.so
 Xisis/3.4.1/lib/libTransverseMercator.so
 Xisis/3.4.1/lib/libUvvisCamera.so
 Xisis/3.4.1/lib/libVikingCamera.so
 Xisis/3.4.1/lib/libVimsCamera.so
 Xisis/3.4.1/lib/libVoyagerCamera.so
 Xisis/3.4.1/lib/libisis3.4.1.a
 Xisis/3.4.1/lib/libisis3.4.1.so
 Xisis/3.4.1/lib/libisis3.4.1.so.3
 Xisis/3.4.1/lib/libisis3.4.so
 Xisis/3.4.1/lib/libisis3.so
 Xisis/3.4.1/templates/gui/basictemplate.xml
 Xisis/3.4.1/templates/gui/comparisontemplate.xml
 Xisis/3.4.1/templates/gui/defaulttemplate.xml
 Xisis/3.4.1/templates/gui/listtemplate.xml
 Xisis/3.4.1/templates/gui/typetemplate.xml
 Xisis/3.4.1/version
 X@dirrm isis/3.4.1/templates/gui
 X@dirrm isis/3.4.1/templates
 X@dirrm isis/3.4.1/lib
 X@dirrm isis/3.4.1/include
 X@dirrm isis/3.4.1/bin/xml
 X@dirrm isis/3.4.1/bin
 X@dirrm isis/3.4.1
 X@dirrm isis
 65b134f0d82fc23433717f57e8aa4397
 echo x - isis3/Makefile
 sed 's/^X//' >isis3/Makefile << 'de0c704a7a1cfe07904b1ca1a4fba3a3'
 XPORTNAME=3D		isis3
 XPORTVERSION=3D		3.4.1
 XCATEGORIES=3D		science
 X
 XMAINTAINER=3D		ohartman@zedat.fu-berlin.de
 X
 XMASTER_SITES=3D		# http://isis.astrogeology.usgs.gov/documents/InstallGu=
 ide/index.html
 X
 XLICENSE_FILE=3D		${WRKSRC}/license.txt
 X
 XCOMMENT=3D		Integrated Software for Imagers and Spectrometers
 X#COMMENT+=3D		SOURCE: rsync -azv --delete --partial isisdist.astrogeolog=
 y.usgs.gov::x86-64_linux_DEBIAN/isis .
 X#COMMENT+=3D		DATA: rsync -azv --delete --partial isisdist.astrogeology.=
 usgs.gov::isis3data/data .
 X
 XUSE_QT4=3D		corelib network linguist opengl qtestlib script scripttools
 XUSE_QT4+=3D		graphicssystems-opengl gui imageformats inputmethods
 XUSE_QT4+=3D		sql sql-odbc sql-mysql sql-pgsql svg webkit assistant assis=
 tantclient=20
 XUSE_QT4+=3D		designer xml xmlpatterns xmlpatterns-tool=20
 XUSE_QT4+=3D		moc qmake rcc uic
 X
 XUSE_X11=3D		x11
 XUSE_GL=3D			yes
 XUSE_LDCONFIG=3D		yes
 XUSE_GMAKE=3D		yes
 XUSE_MYSQL=3D		yes
 XUSE_PGSQL=3D		yes
 X
 XMAKE_ARGS=3D		config incs api apps
 X
 XOPTIONS_DEFINE=3D		DOCS GCC
 XDOCS_DESC=3D		Make and install docs
 XGCC_DESC=3D		Use gcc (4.6+) compiler
 XOPTIONS_DEFAULT=3D	GCC
 X
 X.include <bsd.port.options.mk>
 X
 X.if ${PORT_OPTIONS:MGCC}
 XUSE_GCC=3D		4.6+
 X.endif
 X.if ${PORT_OPTIONS:MDOCS}
 XMAKE_ARGS+=3D		docs
 X.endif
 X
 XBUILD_DEPENDS+=3D		${LOCALBASE}/bin/latex:${PORTSDIR}/print/teTeX
 XBUILD_DEPENDS+=3D		${LOCALBASE}/bin/doxygen:${PORTSDIR}/devel/doxygen
 XBUILD_DEPENDS+=3D		${LOCALBASE}/include/tnt/jama_lu.h:${PORTSDIR}/math/j=
 ama
 XBUILD_DEPENDS+=3D		${LOCALBASE}/include/gmm/gmm.h:${PORTSDIR}/math/gmm++=
 
 XBUILD_DEPENDS+=3D		${LOCALBASE}/bin/gawk:${PORTSDIR}/lang/gawk
 XBUILD_DEPENDS+=3D		${LOCALBASE}/bin/xalan-j:${PORTSDIR}/textproc/xalan-j=
 
 X#
 XLIB_DEPENDS+=3D		qwt6.6:${PORTSDIR}/x11-toolkits/qwt6
 XLIB_DEPENDS+=3D		boost_thread.4:${PORTSDIR}/devel/boost-libs
 XLIB_DEPENDS+=3D		cwd.2:${PORTSDIR}/devel/libcwd
 XLIB_DEPENDS+=3D		gsl.16:${PORTSDIR}/math/gsl
 XLIB_DEPENDS+=3D		cholmod.1:${PORTSDIR}/math/suitesparse
 XLIB_DEPENDS+=3D		jpeg.11:${PORTSDIR}/graphics/jpeg
 XLIB_DEPENDS+=3D		tiff.4:${PORTSDIR}/graphics/tiff
 XLIB_DEPENDS+=3D		png15.15:${PORTSDIR}/graphics/png
 XLIB_DEPENDS+=3D		geos.0:${PORTSDIR}/graphics/geos
 XLIB_DEPENDS+=3D		gdal.17:${PORTSDIR}/graphics/gdal
 XLIB_DEPENDS+=3D		protobuf.7:${PORTSDIR}/devel/protobuf
 XLIB_DEPENDS+=3D		phonon:${PORTSDIR}/multimedia/phonon
 XLIB_DEPENDS+=3D		superlu.4:${PORTSDIR}/math/superlu
 XLIB_DEPENDS+=3D		cspice.6:${PORTSDIR}/astro/cspice
 XLIB_DEPENDS+=3D		xerces-c.3:${PORTSDIR}/textproc/xerces-c3
 X#
 XISIS3_LIB_VERSION=3D	${PORTVERSION:C/\.[0-9]*\.[0-9]*$//}=09
 XISIS3_LIB_STATIC_FULL=3D	lib${PORTNAME:C/[0-9]*$//}${PORTVERSION}.a
 X
 XISIS3_LIB_MAIN=3D		lib${PORTNAME:C/[0-9]*$//}${PORTVERSION}.so.${ISIS3_L=
 IB_VERSION}
 XISIS3_LIB_1LN=3D		lib${PORTNAME:C/[0-9]*$//}${PORTVERSION}.so
 XISIS3_LIB_2LN=3D		lib${PORTNAME:C/[0-9]*$//}${PORTVERSION:C/\.[0-9]+[0-9=
 ]*$//}.so
 XISIS3_LIB_3LN=3D		lib${PORTNAME:C/[0-9]*$//}${PORTVERSION:C/\.[0-9]+[0-9=
 ]*\.[0-9][0-9]*$//}.so
 X
 XISIS3_ROOT=3D		${PREFIX}/${PORTNAME:C/[0-9]*$//}/${PORTVERSION}
 X
 XMAKE_ENV+=3D		ISISROOT=3D${WRKSRC} \
 X			${CONFIGURE_ENV} \
 X			QT_INCDIR=3D${QT_INCDIR} \
 X			QT_LIBDIR=3D${QT_LIBDIR} \
 X			QMAKESPEC=3D${QMAKESPEC} \
 X			RCC=3D$(RCC) \
 X			UIC=3D$(UIC) \
 X			MOC=3D$(MOC) \
 X			QMAKE=3D$(QMAKE)
 X
 X# necessary for CLANG
 XCPPFLAGS+=3D		-I{LOCALBASE}/include \
 X			-I${QT_INCDIR}
 X
 X.include <bsd.port.pre.mk>
 X
 Xpre-configure:
 X	unset ISISROOT
 X	export ISISROOT=3D${WRKSRC}
 X	${INSTALL_DATA} ${FILESDIR}/config.freebsd ${WRKSRC}/make/
 X
 Xdo-install:
 X# Install the shared libraries
 X.if !exists(${ISIS3_ROOT}/lib)
 X	${MKDIR} ${ISIS3_ROOT}/lib
 X.endif
 X	${INSTALL_PROGRAM} ${WRKSRC}/lib/${ISIS3_LIB_1LN} ${ISIS3_ROOT}/lib/${I=
 SIS3_LIB_MAIN}
 X	${INSTALL_PROGRAM} ${WRKSRC}/lib/lib[A-Z]*.so ${ISIS3_ROOT}/lib/
 X
 X	${INSTALL_DATA} ${WRKSRC}/lib/${ISIS3_LIB_STATIC_FULL} ${ISIS3_ROOT}/li=
 b/
 X	${INSTALL_DATA} ${WRKSRC}/lib/*.plugin ${ISIS3_ROOT}/lib/
 X
 X.if !exists(${ISIS3_ROOT}/include)
 X	${MKDIR} ${ISIS3_ROOT}/include
 X.endif
 X	${INSTALL_DATA} ${WRKSRC}/inc/*.h ${ISIS3_ROOT}/include/
 X
 X.if !exists(${ISIS3_ROOT}/templates/gui/)
 X	${MKDIR} ${ISIS3_ROOT}/templates/gui
 X.endif
 X
 X	${INSTALL_DATA} ${WRKSRC}/templates/gui/*.xml ${ISIS3_ROOT}/templates/g=
 ui/
 X
 X.if !exists(${ISIS3_ROOT}/bin)
 X	${MKDIR} ${ISIS3_ROOT}/bin
 X.endif
 X	${INSTALL_PROGRAM} ${WRKSRC}/bin/[a-wz]* ${ISIS3_ROOT}/bin/
 X
 X.if !exists(${ISIS3_ROOT}/bin/xml/)
 X	${MKDIR} ${ISIS3_ROOT}/bin/xml
 X.endif
 X	${INSTALL_DATA} ${WRKSRC}/bin/xml/* ${ISIS3_ROOT}/bin/xml/
 X	${INSTALL_DATA} ${WRKSRC}/IsisPreferences ${ISIS3_ROOT}/
 X=09
 Xpost-install:
 X	@${ECHO} "post-install:"; \
 X	cd ${ISIS3_ROOT}/lib &&\
 X	${LN} -fs ${ISIS3_LIB_MAIN}  ${ISIS3_LIB_1LN} &&\
 X	${LN} -fs ${ISIS3_LIB_1LN}  ${ISIS3_LIB_2LN} &&\
 X	${LN} -fs ${ISIS3_LIB_2LN}  ${ISIS3_LIB_3LN} &&\
 X	${ECHO} ${PORTVERSION} > ${ISIS3_ROOT}/version
 X
 X.include <bsd.port.post.mk>
 de0c704a7a1cfe07904b1ca1a4fba3a3
 exit
 
 
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 --------------enigD5C4A32F7C1F8E48DEB154A6--
State-Changed-From-To: open->feedback 
State-Changed-By: jadawin 
State-Changed-When: Wed Nov 20 15:02:52 UTC 2013 
State-Changed-Why:  
No activity since 25 Sep 2012. Can we close this PR? 

http://www.freebsd.org/cgi/query-pr.cgi?pr=171019 
State-Changed-From-To: feedback->closed 
State-Changed-By: jadawin 
State-Changed-When: Wed Nov 20 16:06:25 UTC 2013 
State-Changed-Why:  
Submitter is ok to close this PR. To a better visibility for your PR, 
feel free to submit a new PR. Regads. 

http://www.freebsd.org/cgi/query-pr.cgi?pr=171019 
>Unformatted:
