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Date: Mon, 16 Jul 2012 23:56:18 GMT
From: Jason Bacon <jwbacon@tds.net>
To: freebsd-gnats-submit@FreeBSD.org
Subject: Maintainer update: science/minc
X-Send-Pr-Version: www-3.1
X-GNATS-Notify:

>Number:         169924
>Category:       ports
>Synopsis:       Maintainer update: science/minc
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    zeising
>State:          closed
>Quarter:        
>Keywords:       
>Date-Required:  
>Class:          maintainer-update
>Submitter-Id:   current-users
>Arrival-Date:   Tue Jul 17 00:00:24 UTC 2012
>Closed-Date:    Fri Jul 20 16:35:34 UTC 2012
>Last-Modified:  Fri Jul 20 16:40:11 UTC 2012
>Originator:     Jason Bacon
>Release:        9.0-RELEASE
>Organization:
Acadix Consulting, LLC
>Environment:
FreeBSD sculpin.jbacon.dyndns.org 9.0-RELEASE FreeBSD 9.0-RELEASE #0: Tue Jan  3 07:46:30 UTC 2012     root@farrell.cse.buffalo.edu:/usr/obj/usr/src/sys/GENERIC  amd64
>Description:
Routine upgrade, add conflicts.
>How-To-Repeat:

>Fix:
Diff attached.

Patch attached with submission follows:

diff -ruN --exclude=CVS /usr/ports/science/minc/Makefile /home/bacon/Prog/Ports/ports/science/minc/Makefile
--- /usr/ports/science/minc/Makefile	2011-09-23 17:25:07.000000000 -0500
+++ /home/bacon/Prog/Ports/ports/science/minc/Makefile	2012-07-15 11:25:58.000000000 -0500
@@ -16,11 +16,9 @@
 # Of course, the netcdf port must be installed first.
 
 PORTNAME=	minc
-PORTVERSION=	1.4
-PORTREVISION=	2
+PORTVERSION=	1.5.1
 CATEGORIES=	science biology
-MASTER_SITES=	http://www.bic.mni.mcgill.ca/software/distribution/packages/ \
-		http://www.neuro.mcw.edu/~bacon/Ports/distfiles/
+MASTER_SITES=	http://www.nitrc.org/frs/downloadlink.php/400/
 
 MAINTAINER=	jwbacon@tds.net
 COMMENT=	Medical Imaging NetCDF
@@ -34,7 +32,9 @@
 LDFLAGS+=	-L${LOCALBASE}/lib
 CONFIGURE_ARGS=	--enable-static=yes --enable-shared=yes
 
-CONFLICTS=	minc-2*
+CONFLICTS=	minc-2* zh-tk-[0-9]*
+
+WRKSRC=		${WRKDIR}/${PORTNAME}-1.5
 
 MAN1=	dcm2mnc.1 \
 	ecattominc.1 \
@@ -49,6 +49,7 @@
 	mincexpand.1 \
 	mincextract.1 \
 	mincheader.1 \
+	minchistory.1 \
 	mincinfo.1 \
 	minclookup.1 \
 	mincmakescalar.1 \
@@ -73,6 +74,8 @@
 
 MAN3=	ParseArgv.3
 
+FETCH_ARGS+=	-F
+
 post-install:
 	@${CAT} ${PKGMESSAGE}
 
diff -ruN --exclude=CVS /usr/ports/science/minc/distinfo /home/bacon/Prog/Ports/ports/science/minc/distinfo
--- /usr/ports/science/minc/distinfo	2011-07-03 08:22:19.000000000 -0500
+++ /home/bacon/Prog/Ports/ports/science/minc/distinfo	2012-07-15 13:38:47.000000000 -0500
@@ -1,2 +1,2 @@
-SHA256 (minc-1.4.tar.gz) = a07c9523f232c823f38275bc8bb23011e70a29a0a45071dad0dec81317a75c4f
-SIZE (minc-1.4.tar.gz) = 1213768
+SHA256 (minc-1.5.1.tar.gz) = 3ca7045c6eaa32daea184af3f78e30969bb0a0dddce2a1b292ba1624d23a61c9
+SIZE (minc-1.5.1.tar.gz) = 1356462


>Release-Note:
>Audit-Trail:
Responsible-Changed-From-To: freebsd-ports-bugs->zeising 
Responsible-Changed-By: zeising 
Responsible-Changed-When: Wed Jul 18 20:52:31 UTC 2012 
Responsible-Changed-Why:  
I'll take it. 

http://www.freebsd.org/cgi/query-pr.cgi?pr=169924 

From: Niclas Zeising <zeising@freebsd.org>
To: bug-followup@FreeBSD.org, jwbacon@tds.net
Cc:  
Subject: Re: ports/169924: Maintainer update: science/minc
Date: Fri, 20 Jul 2012 17:37:23 +0200

 This is a multi-part message in MIME format.
 --------------000106070506090903010105
 Content-Type: text/plain; charset=ISO-8859-1; format=flowed
 Content-Transfer-Encoding: 7bit
 
 Hi!
 http://people.freebsd.org/~kwm/patch-conversion__minctoecat__machine_indep.c 
 is a patch to fix build of minc with clang, is it ok to include it?
 I also changed the WWW line in pkg-descr and pkg-message to point to 
 http://www.bic.mni.mcgill.ca/ServicesSoftware/MINC since the previous 
 link was dead.  Attached patch with your update and these changes are 
 attached, so you can check it and let me know if you approve.
 -- 
 Niclas Zeising
 
 --------------000106070506090903010105
 Content-Type: text/x-patch;
  name="ports.science.minc.diff"
 Content-Transfer-Encoding: 7bit
 Content-Disposition: attachment;
  filename="ports.science.minc.diff"
 
 Index: science/minc/pkg-descr
 ===================================================================
 --- science/minc/pkg-descr	(revision 301151)
 +++ science/minc/pkg-descr	(working copy)
 @@ -4,7 +4,7 @@
  Institute. Many others have contributed to the design and implementation 
  MINC over the years.
  
 -WWW: http://www.bic.mni.mcgill.ca/software/minc/
 +WWW: http://www.bic.mni.mcgill.ca/ServicesSoftware/MINC
  
  Port maintainer: Jason W. Bacon
  		 jwbacon@tds.net
 Index: science/minc/distinfo
 ===================================================================
 --- science/minc/distinfo	(revision 301151)
 +++ science/minc/distinfo	(working copy)
 @@ -1,2 +1,2 @@
 -SHA256 (minc-1.4.tar.gz) = a07c9523f232c823f38275bc8bb23011e70a29a0a45071dad0dec81317a75c4f
 -SIZE (minc-1.4.tar.gz) = 1213768
 +SHA256 (minc-1.5.1.tar.gz) = 3ca7045c6eaa32daea184af3f78e30969bb0a0dddce2a1b292ba1624d23a61c9
 +SIZE (minc-1.5.1.tar.gz) = 1356462
 Index: science/minc/files/patch-conversion__minctoecat__machine_indep.c
 ===================================================================
 --- science/minc/files/patch-conversion__minctoecat__machine_indep.c	(revision 0)
 +++ science/minc/files/patch-conversion__minctoecat__machine_indep.c	(working copy)
 @@ -0,0 +1,11 @@
 +--- conversion/minctoecat/machine_indep.c.orig	2012-07-20 17:16:13.000000000 +0200
 ++++ conversion/minctoecat/machine_indep.c	2012-07-20 17:17:48.000000000 +0200
 +@@ -84,7 +84,7 @@
 + 	bufr[1] =  ret >>16;
 + }
 + #else  /* BIG ENDIAN : sun hp sgi*/
 +-ftovaxf(orig,number)
 ++void ftovaxf(orig,number)
 +   unsigned short number[2];
 +   float orig;
 + {
 
 Property changes on: science/minc/files/patch-conversion__minctoecat__machine_indep.c
 ___________________________________________________________________
 Added: svn:mime-type
 ## -0,0 +1 ##
 +text/plain
 \ No newline at end of property
 Added: svn:keywords
 ## -0,0 +1 ##
 +FreeBSD=%H
 \ No newline at end of property
 Added: fbsd:nokeywords
 ## -0,0 +1 ##
 +yes
 \ No newline at end of property
 Added: svn:eol-style
 ## -0,0 +1 ##
 +native
 \ No newline at end of property
 Index: science/minc/pkg-message
 ===================================================================
 --- science/minc/pkg-message	(revision 301151)
 +++ science/minc/pkg-message	(working copy)
 @@ -4,5 +4,5 @@
  
  For MINC usage, please visit the MINC WEB site at
  
 -http://www.bic.mni.mcgill.ca/software/minc/
 +http://www.bic.mni.mcgill.ca/ServicesSoftware/MINC
  =============================================================================
 Index: science/minc/Makefile
 ===================================================================
 --- science/minc/Makefile	(revision 301151)
 +++ science/minc/Makefile	(working copy)
 @@ -16,11 +16,9 @@
  # Of course, the netcdf port must be installed first.
  
  PORTNAME=	minc
 -PORTVERSION=	1.4
 -PORTREVISION=	2
 +PORTVERSION=	1.5.1
  CATEGORIES=	science biology
 -MASTER_SITES=	http://www.bic.mni.mcgill.ca/software/distribution/packages/ \
 -		http://www.neuro.mcw.edu/~bacon/Ports/distfiles/
 +MASTER_SITES=	http://www.nitrc.org/frs/downloadlink.php/400/
  
  MAINTAINER=	jwbacon@tds.net
  COMMENT=	Medical Imaging NetCDF
 @@ -34,8 +32,10 @@
  LDFLAGS+=	-L${LOCALBASE}/lib
  CONFIGURE_ARGS=	--enable-static=yes --enable-shared=yes
  
 -CONFLICTS=	minc-2*
 +CONFLICTS=	minc-2* zh-tk-[0-9]*
  
 +WRKSRC=		${WRKDIR}/${PORTNAME}-1.5
 +
  MAN1=	dcm2mnc.1 \
  	ecattominc.1 \
  	invert_raw_image.1 \
 @@ -49,6 +49,7 @@
  	mincexpand.1 \
  	mincextract.1 \
  	mincheader.1 \
 +	minchistory.1 \
  	mincinfo.1 \
  	minclookup.1 \
  	mincmakescalar.1 \
 @@ -73,6 +74,8 @@
  
  MAN3=	ParseArgv.3
  
 +FETCH_ARGS+=	-F
 +
  post-install:
  	@${CAT} ${PKGMESSAGE}
  
 
 --------------000106070506090903010105--

From: Jason Bacon <jwbacon@tds.net>
To: Niclas Zeising <zeising@freebsd.org>
Cc: bug-followup@FreeBSD.org
Subject: Re: ports/169924: Maintainer update: science/minc
Date: Fri, 20 Jul 2012 10:59:23 -0500

 Yes, it's fine.
 
 Thanks,
 
      -J
 
 On 07/20/12 10:37, Niclas Zeising wrote:
 > Hi!
 > http://people.freebsd.org/~kwm/patch-conversion__minctoecat__machine_indep.c 
 > is a patch to fix build of minc with clang, is it ok to include it?
 > I also changed the WWW line in pkg-descr and pkg-message to point to 
 > http://www.bic.mni.mcgill.ca/ServicesSoftware/MINC since the previous 
 > link was dead.  Attached patch with your update and these changes are 
 > attached, so you can check it and let me know if you approve.
 
 
 -- 
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 Jason W. Bacon
 jwbacon@tds.net
 http://personalpages.tds.net/~jwbacon
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
 
State-Changed-From-To: open->closed 
State-Changed-By: zeising 
State-Changed-When: Fri Jul 20 16:35:32 UTC 2012 
State-Changed-Why:  
Committed. Thanks! 

http://www.freebsd.org/cgi/query-pr.cgi?pr=169924 

From: dfilter@FreeBSD.ORG (dfilter service)
To: bug-followup@FreeBSD.org
Cc:  
Subject: Re: ports/169924: commit references a PR
Date: Fri, 20 Jul 2012 16:32:22 +0000 (UTC)

 Author: zeising
 Date: Fri Jul 20 16:32:07 2012
 New Revision: 301233
 URL: http://svn.freebsd.org/changeset/ports/301233
 
 Log:
   Update to version 1.5.1 [1]
   Fix build with clang [2]
   Change WWW in pkg-descr and pkg-message to point to current web side [3]
   
   PR:		ports/169924 [1]
   Submitted by:	Jason Bacon <jwbacon@tds.net> (maintainer) [1], kwm [2], [3]
   Approved by:	maintainer, kwm (mentor)
 
 Added:
   head/science/minc/files/
   head/science/minc/files/patch-conversion__minctoecat__machine_indep.c   (contents, props changed)
 Modified:
   head/science/minc/Makefile
   head/science/minc/distinfo
   head/science/minc/pkg-descr
   head/science/minc/pkg-message
 
 Modified: head/science/minc/Makefile
 ==============================================================================
 --- head/science/minc/Makefile	Fri Jul 20 15:21:06 2012	(r301232)
 +++ head/science/minc/Makefile	Fri Jul 20 16:32:07 2012	(r301233)
 @@ -16,11 +16,9 @@
  # Of course, the netcdf port must be installed first.
  
  PORTNAME=	minc
 -PORTVERSION=	1.4
 -PORTREVISION=	2
 +PORTVERSION=	1.5.1
  CATEGORIES=	science biology
 -MASTER_SITES=	http://www.bic.mni.mcgill.ca/software/distribution/packages/ \
 -		http://www.neuro.mcw.edu/~bacon/Ports/distfiles/
 +MASTER_SITES=	http://www.nitrc.org/frs/downloadlink.php/400/
  
  MAINTAINER=	jwbacon@tds.net
  COMMENT=	Medical Imaging NetCDF
 @@ -34,7 +32,9 @@ CPPFLAGS+=	-I${LOCALBASE}/include
  LDFLAGS+=	-L${LOCALBASE}/lib
  CONFIGURE_ARGS=	--enable-static=yes --enable-shared=yes
  
 -CONFLICTS=	minc-2*
 +CONFLICTS=	minc-2* zh-tk-[0-9]*
 +
 +WRKSRC=		${WRKDIR}/${PORTNAME}-1.5
  
  MAN1=	dcm2mnc.1 \
  	ecattominc.1 \
 @@ -49,6 +49,7 @@ MAN1=	dcm2mnc.1 \
  	mincexpand.1 \
  	mincextract.1 \
  	mincheader.1 \
 +	minchistory.1 \
  	mincinfo.1 \
  	minclookup.1 \
  	mincmakescalar.1 \
 @@ -73,6 +74,8 @@ MAN1=	dcm2mnc.1 \
  
  MAN3=	ParseArgv.3
  
 +FETCH_ARGS+=	-F
 +
  post-install:
  	@${CAT} ${PKGMESSAGE}
  
 
 Modified: head/science/minc/distinfo
 ==============================================================================
 --- head/science/minc/distinfo	Fri Jul 20 15:21:06 2012	(r301232)
 +++ head/science/minc/distinfo	Fri Jul 20 16:32:07 2012	(r301233)
 @@ -1,2 +1,2 @@
 -SHA256 (minc-1.4.tar.gz) = a07c9523f232c823f38275bc8bb23011e70a29a0a45071dad0dec81317a75c4f
 -SIZE (minc-1.4.tar.gz) = 1213768
 +SHA256 (minc-1.5.1.tar.gz) = 3ca7045c6eaa32daea184af3f78e30969bb0a0dddce2a1b292ba1624d23a61c9
 +SIZE (minc-1.5.1.tar.gz) = 1356462
 
 Added: head/science/minc/files/patch-conversion__minctoecat__machine_indep.c
 ==============================================================================
 --- /dev/null	00:00:00 1970	(empty, because file is newly added)
 +++ head/science/minc/files/patch-conversion__minctoecat__machine_indep.c	Fri Jul 20 16:32:07 2012	(r301233)
 @@ -0,0 +1,11 @@
 +--- conversion/minctoecat/machine_indep.c.orig	2012-07-20 17:16:13.000000000 +0200
 ++++ conversion/minctoecat/machine_indep.c	2012-07-20 17:17:48.000000000 +0200
 +@@ -84,7 +84,7 @@
 + 	bufr[1] =  ret >>16;
 + }
 + #else  /* BIG ENDIAN : sun hp sgi*/
 +-ftovaxf(orig,number)
 ++void ftovaxf(orig,number)
 +   unsigned short number[2];
 +   float orig;
 + {
 
 Modified: head/science/minc/pkg-descr
 ==============================================================================
 --- head/science/minc/pkg-descr	Fri Jul 20 15:21:06 2012	(r301232)
 +++ head/science/minc/pkg-descr	Fri Jul 20 16:32:07 2012	(r301233)
 @@ -4,7 +4,7 @@ Neelin at the McConnell Brain Imaging Ce
  Institute. Many others have contributed to the design and implementation 
  MINC over the years.
  
 -WWW: http://www.bic.mni.mcgill.ca/software/minc/
 +WWW: http://www.bic.mni.mcgill.ca/ServicesSoftware/MINC
  
  Port maintainer: Jason W. Bacon
  		 jwbacon@tds.net
 
 Modified: head/science/minc/pkg-message
 ==============================================================================
 --- head/science/minc/pkg-message	Fri Jul 20 15:21:06 2012	(r301232)
 +++ head/science/minc/pkg-message	Fri Jul 20 16:32:07 2012	(r301233)
 @@ -4,5 +4,5 @@ port maintainer: jwbacon@tds.net
  
  For MINC usage, please visit the MINC WEB site at
  
 -http://www.bic.mni.mcgill.ca/software/minc/
 +http://www.bic.mni.mcgill.ca/ServicesSoftware/MINC
  =============================================================================
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>Unformatted:
