From nobody@FreeBSD.org  Tue Jul  3 17:05:24 2012
Return-Path: <nobody@FreeBSD.org>
Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34])
	by hub.freebsd.org (Postfix) with ESMTP id 7FB2D106566C
	for <freebsd-gnats-submit@FreeBSD.org>; Tue,  3 Jul 2012 17:05:24 +0000 (UTC)
	(envelope-from nobody@FreeBSD.org)
Received: from red.freebsd.org (red.freebsd.org [IPv6:2001:4f8:fff6::22])
	by mx1.freebsd.org (Postfix) with ESMTP id 6A0EB8FC1C
	for <freebsd-gnats-submit@FreeBSD.org>; Tue,  3 Jul 2012 17:05:24 +0000 (UTC)
Received: from red.freebsd.org (localhost [127.0.0.1])
	by red.freebsd.org (8.14.4/8.14.4) with ESMTP id q63H5Ol9076828
	for <freebsd-gnats-submit@FreeBSD.org>; Tue, 3 Jul 2012 17:05:24 GMT
	(envelope-from nobody@red.freebsd.org)
Received: (from nobody@localhost)
	by red.freebsd.org (8.14.4/8.14.4/Submit) id q63H5O8P076820;
	Tue, 3 Jul 2012 17:05:24 GMT
	(envelope-from nobody)
Message-Id: <201207031705.q63H5O8P076820@red.freebsd.org>
Date: Tue, 3 Jul 2012 17:05:24 GMT
From: Joseph Mingrone <jrm@ftfl.ca>
To: freebsd-gnats-submit@FreeBSD.org
Subject: Update of biology/paml from 4.4c to 4.5
X-Send-Pr-Version: www-3.1
X-GNATS-Notify:

>Number:         169632
>Category:       ports
>Synopsis:       Update of biology/paml from 4.4c to 4.5
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    wen
>State:          closed
>Quarter:        
>Keywords:       
>Date-Required:  
>Class:          update
>Submitter-Id:   current-users
>Arrival-Date:   Tue Jul 03 17:10:06 UTC 2012
>Closed-Date:    Sat Apr 05 11:05:38 UTC 2014
>Last-Modified:  Sat Apr 05 11:05:38 UTC 2014
>Originator:     Joseph Mingrone
>Release:        9.0-STABLE
>Organization:
>Environment:
FreeBSD phe.ath.cx 9.0-STABLE FreeBSD 9.0-STABLE #0: Thu Jun 14 03:02:35 UTC 2012     root@phe.ath.cx:/usr/obj/usr/src/sys/PHE  amd64
>Description:

>How-To-Repeat:

>Fix:


Patch attached with submission follows:

diff paml.orig/Makefile paml/Makefile
9c9
< PORTVERSION=	4.4c
---
> PORTVERSION=	4.5
12a13
> EXTRACT_SUFX=	.tgz
diff paml.orig/distinfo paml/distinfo
1,2c1,2
< SHA256 (paml4.4c.tar.gz) = 08aad25b6b06a359d4f2f12a60ea601c95694864d5f29f7028f67b80890974d6
< SIZE (paml4.4c.tar.gz) = 2891715
---
> SHA256 (paml4.5.tgz) = d53a2bea4f2169ff19c52cb2eeed11cc0d8710318be5af78ee10d8ceb9e3a034
> SIZE (paml4.5.tgz) = 3485473


>Release-Note:
>Audit-Trail:
Responsible-Changed-From-To: freebsd-ports-bugs->wen 
Responsible-Changed-By: edwin 
Responsible-Changed-When: Tue Jul 3 17:10:15 UTC 2012 
Responsible-Changed-Why:  
Over to maintainer (via the GNATS Auto Assign Tool) 

http://www.freebsd.org/cgi/query-pr.cgi?pr=169632 

From: Joseph Mingrone <jrm@ftfl.ca>
To: bug-followup@FreeBSD.org
Cc: wen@freebsd.org
Subject: Re: ports/169632: Update of biology/paml from 4.4c to 4.5
Date: Thu, 5 Jul 2012 16:09:34 -0300

 --20cf307f308a5ad93804c419e3f9
 Content-Type: text/plain; charset=UTF-8
 
 I didn't send the correct diff before.  Attached is a correct diff.
 
 Joseph
 
 --20cf307f308a5ad93804c419e3f9
 Content-Type: application/octet-stream; name="paml.diff"
 Content-Disposition: attachment; filename="paml.diff"
 Content-Transfer-Encoding: base64
 X-Attachment-Id: f_h4a7kpl60
 
 ZGlmZiBwYW1sLm9yaWcvTWFrZWZpbGUgcGFtbC9NYWtlZmlsZQo5YzkKPCBQT1JUVkVSU0lPTj0J
 NC40YwotLS0KPiBQT1JUVkVSU0lPTj0JNC41CjEyYTEzCj4gRVhUUkFDVF9TVUZYPQkudGd6CjE4
 YzE5CjwgV1JLU1JDPQkJJHtXUktESVJ9LyR7UE9SVE5BTUV9NDQvc3JjCi0tLQo+IFdSS1NSQz0J
 CSR7V1JLRElSfS8ke1BPUlROQU1FfTQuNS9zcmMKMjJjMjMKPCBET0NfRklMRVM9CU1DTUN0cmVl
 RG9jLnBkZiBwYW1sRE9DLnBkZiBwYW1sRkFRcy5wZGYgcGFtbEhpc3RvcnkudHh0Ci0tLQo+IERP
 Q19GSUxFUz0JTUNNQ3RyZWVET0MucGRmIHBhbWxET0MucGRmIHBhbWxGQVFzLnBkZiBwYW1sSGlz
 dG9yeS50eHQKMzFjMzIKPCAJJHtJTlNUQUxMX0RBVEF9ICR7V1JLRElSfS8ke1BPUlROQU1FfTQ0
 L2RvYy8ke2Z9ICR7RE9DU0RJUn0KLS0tCj4gCSR7SU5TVEFMTF9EQVRBfSAke1dSS0RJUn0vJHtQ
 T1JUTkFNRX00LjUvZG9jLyR7Zn0gJHtET0NTRElSfQpkaWZmIHBhbWwub3JpZy9kaXN0aW5mbyBw
 YW1sL2Rpc3RpbmZvCjEsMmMxLDIKPCBTSEEyNTYgKHBhbWw0LjRjLnRhci5neikgPSAwOGFhZDI1
 YjZiMDZhMzU5ZDRmMmYxMmE2MGVhNjAxYzk1Njk0ODY0ZDVmMjlmNzAyOGY2N2I4MDg5MDk3NGQ2
 CjwgU0laRSAocGFtbDQuNGMudGFyLmd6KSA9IDI4OTE3MTUKLS0tCj4gU0hBMjU2IChwYW1sNC41
 LnRneikgPSBkNTNhMmJlYTRmMjE2OWZmMTljNTJjYjJlZWVkMTFjYzBkODcxMDMxOGJlNWFmNzhl
 ZTEwZDhjZWI5ZTNhMDM0Cj4gU0laRSAocGFtbDQuNS50Z3opID0gMzQ4NTQ3MwpPbmx5IGluIHBh
 bWw6IHdvcmsK
 --20cf307f308a5ad93804c419e3f9--

From: Joseph Mingrone <jrm@ftfl.ca>
To: freebsd-gnats-submit@freebsd.org
Cc: wen@freebsd.org
Subject: Re: ports/169632: Update of biology/paml from 4.4c to 4.5
Date: Thu, 5 Jul 2012 16:15:48 -0300

 --bcaec5015d5da2bfc504c419f911
 Content-Type: text/plain; charset=UTF-8
 
 Take 3.  I forgot to make a change to the pkg-plist file.  Attached is
 hopefully the last diff.
 
 Joseph
 
 --bcaec5015d5da2bfc504c419f911
 Content-Type: application/octet-stream; name="paml.diff"
 Content-Disposition: attachment; filename="paml.diff"
 Content-Transfer-Encoding: base64
 X-Attachment-Id: f_h4a7tu2g0
 
 ZGlmZiAvdXNyL3BvcnRzL2Jpb2xvZ3kvcGFtbC5vcmlnL01ha2VmaWxlIC91c3IvcG9ydHMvYmlv
 bG9neS9wYW1sL01ha2VmaWxlCjljOQo8IFBPUlRWRVJTSU9OPQk0LjRjCi0tLQo+IFBPUlRWRVJT
 SU9OPQk0LjUKMTJhMTMKPiBFWFRSQUNUX1NVRlg9CS50Z3oKMThjMTkKPCBXUktTUkM9CQkke1dS
 S0RJUn0vJHtQT1JUTkFNRX00NC9zcmMKLS0tCj4gV1JLU1JDPQkJJHtXUktESVJ9LyR7UE9SVE5B
 TUV9NC41L3NyYwoyMmMyMwo8IERPQ19GSUxFUz0JTUNNQ3RyZWVEb2MucGRmIHBhbWxET0MucGRm
 IHBhbWxGQVFzLnBkZiBwYW1sSGlzdG9yeS50eHQKLS0tCj4gRE9DX0ZJTEVTPQlNQ01DdHJlZURP
 Qy5wZGYgcGFtbERPQy5wZGYgcGFtbEZBUXMucGRmIHBhbWxIaXN0b3J5LnR4dAozMWMzMgo8IAkk
 e0lOU1RBTExfREFUQX0gJHtXUktESVJ9LyR7UE9SVE5BTUV9NDQvZG9jLyR7Zn0gJHtET0NTRElS
 fQotLS0KPiAJJHtJTlNUQUxMX0RBVEF9ICR7V1JLRElSfS8ke1BPUlROQU1FfTQuNS9kb2MvJHtm
 fSAke0RPQ1NESVJ9CmRpZmYgL3Vzci9wb3J0cy9iaW9sb2d5L3BhbWwub3JpZy9kaXN0aW5mbyAv
 dXNyL3BvcnRzL2Jpb2xvZ3kvcGFtbC9kaXN0aW5mbwoxLDJjMSwyCjwgU0hBMjU2IChwYW1sNC40
 Yy50YXIuZ3opID0gMDhhYWQyNWI2YjA2YTM1OWQ0ZjJmMTJhNjBlYTYwMWM5NTY5NDg2NGQ1ZjI5
 ZjcwMjhmNjdiODA4OTA5NzRkNgo8IFNJWkUgKHBhbWw0LjRjLnRhci5neikgPSAyODkxNzE1Ci0t
 LQo+IFNIQTI1NiAocGFtbDQuNS50Z3opID0gZDUzYTJiZWE0ZjIxNjlmZjE5YzUyY2IyZWVlZDEx
 Y2MwZDg3MTAzMThiZTVhZjc4ZWUxMGQ4Y2ViOWUzYTAzNAo+IFNJWkUgKHBhbWw0LjUudGd6KSA9
 IDM0ODU0NzMKZGlmZiAvdXNyL3BvcnRzL2Jpb2xvZ3kvcGFtbC5vcmlnL3BrZy1wbGlzdCAvdXNy
 L3BvcnRzL2Jpb2xvZ3kvcGFtbC9wa2ctcGxpc3QKMTBjMTAKPCAlJVBPUlRET0NTJSUlJURPQ1NE
 SVIlJS9NQ01DdHJlZURvYy5wZGYKLS0tCj4gJSVQT1JURE9DUyUlJSVET0NTRElSJSUvTUNNQ3Ry
 ZWVET0MucGRmCg==
 --bcaec5015d5da2bfc504c419f911--
State-Changed-From-To: open->closed 
State-Changed-By: wen 
State-Changed-When: Sat Apr 5 11:05:36 UTC 2014 
State-Changed-Why:  
The port had been updated to 4.8. Thank you ! 

http://www.freebsd.org/cgi/query-pr.cgi?pr=169632 
>Unformatted:
