From nobody@FreeBSD.org  Sat Dec 24 22:57:18 2011
Return-Path: <nobody@FreeBSD.org>
Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34])
	by hub.freebsd.org (Postfix) with ESMTP id D88151065675
	for <freebsd-gnats-submit@FreeBSD.org>; Sat, 24 Dec 2011 22:57:18 +0000 (UTC)
	(envelope-from nobody@FreeBSD.org)
Received: from red.freebsd.org (red.freebsd.org [IPv6:2001:4f8:fff6::22])
	by mx1.freebsd.org (Postfix) with ESMTP id BD2AA8FC0A
	for <freebsd-gnats-submit@FreeBSD.org>; Sat, 24 Dec 2011 22:57:18 +0000 (UTC)
Received: from red.freebsd.org (localhost [127.0.0.1])
	by red.freebsd.org (8.14.4/8.14.4) with ESMTP id pBOMvI03021459
	for <freebsd-gnats-submit@FreeBSD.org>; Sat, 24 Dec 2011 22:57:18 GMT
	(envelope-from nobody@red.freebsd.org)
Received: (from nobody@localhost)
	by red.freebsd.org (8.14.4/8.14.4/Submit) id pBOMvIoE021458;
	Sat, 24 Dec 2011 22:57:18 GMT
	(envelope-from nobody)
Message-Id: <201112242257.pBOMvIoE021458@red.freebsd.org>
Date: Sat, 24 Dec 2011 22:57:18 GMT
From: Rob Farmer <rfarmer@predatorlabs.net>
To: freebsd-gnats-submit@FreeBSD.org
Subject: [patch] science/hdf5-18 Update to 1.8.8
X-Send-Pr-Version: www-3.1
X-GNATS-Notify: koziol@hdfgroup.org

>Number:         163595
>Category:       ports
>Synopsis:       [patch] science/hdf5-18 Update to 1.8.8
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    eadler
>State:          closed
>Quarter:        
>Keywords:       
>Date-Required:  
>Class:          update
>Submitter-Id:   current-users
>Arrival-Date:   Sat Dec 24 23:00:32 UTC 2011
>Closed-Date:    Mon Feb 13 03:44:08 UTC 2012
>Last-Modified:  Mon Feb 13 03:44:08 UTC 2012
>Originator:     Rob Farmer
>Release:        10-CURRENT
>Organization:
>Environment:
FreeBSD turquoise.predatorlabs.net 10.0-CURRENT FreeBSD 10.0-CURRENT #0: Sat Dec 24 01:03:56 PST 2011     rfarmer@turquoise.predatorlabs.net:/usr/obj/usr/src/sys/TURQUOISE  amd64
>Description:
-Update to 1.8.8
-Fix bad shell scripts; all regression tests pass now
>How-To-Repeat:

>Fix:


Patch attached with submission follows:

Index: Makefile
===================================================================
RCS file: /home/ncvs/ports/science/hdf5-18/Makefile,v
retrieving revision 1.63
diff -u -r1.63 Makefile
--- Makefile	9 Nov 2011 15:25:42 -0000	1.63
+++ Makefile	22 Dec 2011 02:37:21 -0000
@@ -6,7 +6,7 @@
 #
 
 PORTNAME=	hdf5
-PORTVERSION=	1.8.7
+PORTVERSION=	1.8.8
 CATEGORIES=	science archivers graphics
 MASTER_SITES=	ftp://ftp.hdfgroup.org/HDF5/prev-releases/hdf5-${PORTVERSION}/src/
 #DISTNAME=	${PORTNAME}-${PORTVERSION}-patch1
@@ -62,6 +62,7 @@
 		-e 's|/share/hdf5_examples|/${EXAMPLESDIR_REL}|' \
 		-e 's|(INSTALL)|(INSTALL_DATA)|' \
 			`${FIND} ${WRKSRC} -regex '.*/examples/Makefile.in'`
+	@${REINPLACE_CMD} -e 's|\[ -a|\[ -f|g' `${FIND} ${WRKSRC} -name \*.sh\*`
 .if defined(NOPORTEXAMPLES)
 	@${REINPLACE_CMD} -e '/^install:/ s|install-examples||' ${WRKSRC}/Makefile.in
 .endif
Index: distinfo
===================================================================
RCS file: /home/ncvs/ports/science/hdf5-18/distinfo,v
retrieving revision 1.25
diff -u -r1.25 distinfo
--- distinfo	15 Jul 2011 06:58:28 -0000	1.25
+++ distinfo	21 Dec 2011 05:18:39 -0000
@@ -1,2 +1,2 @@
-SHA256 (hdf5-1.8.7.tar.bz2) = 771761c9bec30b9a4137fa59ef88fdafdb0f4f35d1db0fd655f2591d19570fec
-SIZE (hdf5-1.8.7.tar.bz2) = 5710170
+SHA256 (hdf5-1.8.8.tar.bz2) = b0ebb0b5478c6c0427631d4ad08f96e39f1b09fde615aa98d2a1b8fb7f6dced3
+SIZE (hdf5-1.8.8.tar.bz2) = 5827394
Index: pkg-plist
===================================================================
RCS file: /home/ncvs/ports/science/hdf5-18/pkg-plist,v
retrieving revision 1.29
diff -u -r1.29 pkg-plist
--- pkg-plist	15 Jul 2011 06:58:28 -0000	1.29
+++ pkg-plist	21 Dec 2011 07:20:57 -0000
@@ -90,8 +90,12 @@
 include/H5version.h
 %%FORTRAN%%include/h5_dble_interface.mod
 %%FORTRAN%%include/h5a.mod
+%%FORTRAN%%include/h5a_provisional.mod
 %%FORTRAN%%include/h5d.mod
+%%FORTRAN%%include/h5d_provisional.mod
+%%FORTRAN%%include/h5ds.mod
 %%FORTRAN%%include/h5e.mod
+%%FORTRAN%%include/h5e_provisional.mod
 %%FORTRAN%%include/h5f.mod
 %%FORTRAN%%include/h5fortran_types.mod
 %%FORTRAN%%include/h5g.mod
@@ -99,13 +103,19 @@
 %%FORTRAN%%include/h5i.mod
 %%FORTRAN%%include/h5im.mod
 %%FORTRAN%%include/h5l.mod
+%%FORTRAN%%include/h5l_provisional.mod
 %%FORTRAN%%include/h5lib.mod
+%%FORTRAN%%include/h5lib_provisional.mod
 %%FORTRAN%%include/h5lt.mod
 %%FORTRAN%%include/h5o.mod
+%%FORTRAN%%include/h5o_provisional.mod
 %%FORTRAN%%include/h5p.mod
+%%FORTRAN%%include/h5p_provisional.mod
 %%FORTRAN%%include/h5r.mod
+%%FORTRAN%%include/h5r_provisional.mod
 %%FORTRAN%%include/h5s.mod
 %%FORTRAN%%include/h5t.mod
+%%FORTRAN%%include/h5t_provisional.mod
 %%FORTRAN%%include/h5tb.mod
 %%FORTRAN%%include/h5z.mod
 include/hdf5.h
@@ -188,6 +198,7 @@
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ptExampleFL.c
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ptExampleVL.c
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/run-hlc-ex.sh
+%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/fortran/ex_ds1.f90
 %%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/fortran/exlite.f90
 %%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/fortran/run-hlfortran-ex.sh
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/run-hl-ex.sh
Index: files/patch-src-H5FDdirect.c
===================================================================
RCS file: /home/ncvs/ports/science/hdf5-18/files/patch-src-H5FDdirect.c,v
retrieving revision 1.1
diff -u -r1.1 patch-src-H5FDdirect.c
--- files/patch-src-H5FDdirect.c	24 Nov 2008 05:29:55 -0000	1.1
+++ files/patch-src-H5FDdirect.c	22 Dec 2011 00:51:02 -0000
@@ -1,11 +1,11 @@
---- src/H5FDdirect.c.orig	2008-09-24 22:02:07.000000000 +0800
-+++ src/H5FDdirect.c	2008-09-24 22:02:38.000000000 +0800
+--- ./src/H5FDdirect.c.orig	2011-11-07 14:11:30.000000000 -0800
++++ ./src/H5FDdirect.c	2011-12-21 16:50:03.000000000 -0800
 @@ -29,6 +29,8 @@
   * this file. */
  /* #define _XOPEN_SOURCE 600 */
  
-+#define O_DIRECT        0x00010000
++#define O_DIRECT	0x00010000
 +
- #include "H5private.h"		/* Generic Functions			*/
- #include "H5Eprivate.h"		/* Error handling		  	*/
- #include "H5Fprivate.h"		/* File access				*/
+ #include "H5private.h"    /* Generic Functions      */
+ #include "H5Eprivate.h"    /* Error handling        */
+ #include "H5Fprivate.h"    /* File access        */


>Release-Note:
>Audit-Trail:
State-Changed-From-To: open->feedback 
State-Changed-By: edwin 
State-Changed-When: Sat Dec 24 23:01:04 UTC 2011 
State-Changed-Why:  
Awaiting maintainers feedback (via the GNATS Auto Assign Tool) 

http://www.freebsd.org/cgi/query-pr.cgi?pr=163595 

From: Edwin Groothuis <edwin@FreeBSD.org>
To: koziol@hdfgroup.org
Cc: bug-followup@FreeBSD.org
Subject: Re: ports/163595: [patch] science/hdf5-18 Update to 1.8.8
Date: Sat, 24 Dec 2011 23:01:01 UT

 Maintainer of science/hdf5-18,
 
 Please note that PR ports/163595 has just been submitted.
 
 If it contains a patch for an upgrade, an enhancement or a bug fix
 you agree on, reply to this email stating that you approve the patch
 and a committer will take care of it.
 
 The full text of the PR can be found at:
     http://www.freebsd.org/cgi/query-pr.cgi?pr=ports/163595
 
 -- 
 Edwin Groothuis via the GNATS Auto Assign Tool
 edwin@FreeBSD.org
Responsible-Changed-From-To: freebsd-ports-bugs->eadler 
Responsible-Changed-By: eadler 
Responsible-Changed-When: Sun Dec 25 07:48:37 UTC 2011 
Responsible-Changed-Why:  
I'll take it. 

http://www.freebsd.org/cgi/query-pr.cgi?pr=163595 
State-Changed-From-To: feedback->open 
State-Changed-By: eadler 
State-Changed-When: Fri Feb 10 03:25:50 UTC 2012 
State-Changed-Why:  
feedback timeout 

http://www.freebsd.org/cgi/query-pr.cgi?pr=163595 

From: dfilter@FreeBSD.ORG (dfilter service)
To: bug-followup@FreeBSD.org
Cc:  
Subject: Re: ports/163595: commit references a PR
Date: Mon, 13 Feb 2012 03:32:10 +0000 (UTC)

 eadler      2012-02-13 03:31:53 UTC
 
   FreeBSD ports repository
 
   Modified files:
     science/hdf5-18      Makefile distinfo pkg-plist 
     science/hdf5-18/files patch-src-H5FDdirect.c 
   Log:
   Update to 1.8.8
   
   Changes:
   
   Fix bad shell scripts; all regression tests pass now
   
   PR:             ports/163595
   Submitted by:   Rob Farmer <rfarmer@predatorlabs.net>
   Approved by:    maintainer timeout (49 days)
   
   Revision  Changes    Path
   1.64      +2 -1      ports/science/hdf5-18/Makefile
   1.26      +2 -2      ports/science/hdf5-18/distinfo
   1.2       +6 -6      ports/science/hdf5-18/files/patch-src-H5FDdirect.c
   1.30      +11 -0     ports/science/hdf5-18/pkg-plist
 _______________________________________________
 cvs-all@freebsd.org mailing list
 http://lists.freebsd.org/mailman/listinfo/cvs-all
 To unsubscribe, send any mail to "cvs-all-unsubscribe@freebsd.org"
 
State-Changed-From-To: open->closed 
State-Changed-By: eadler 
State-Changed-When: Mon Feb 13 03:44:06 UTC 2012 
State-Changed-Why:  
Committed, thanks. sorry about the long delay 

http://www.freebsd.org/cgi/query-pr.cgi?pr=163595 
>Unformatted:
