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Date: Fri, 27 Apr 2007 09:33:56 -0500 (CDT)
From: Jason Bacon <bacon@smithers.neuro.mcw.edu>
Reply-To: Jason Bacon <bacon@smithers.neuro.mcw.edu>
To: FreeBSD-gnats-submit@freebsd.org
Cc:
Subject: New port: science/nifticlib NIFTI imaging data format
X-Send-Pr-Version: 3.113
X-GNATS-Notify:

>Number:         112183
>Category:       ports
>Synopsis:       New port: science/nifticlib NIFTI imaging data format
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    miwi
>State:          closed
>Quarter:        
>Keywords:       
>Date-Required:  
>Class:          change-request
>Submitter-Id:   current-users
>Arrival-Date:   Fri Apr 27 14:40:05 GMT 2007
>Closed-Date:    Sat Apr 28 10:58:02 GMT 2007
>Last-Modified:  Sat Apr 28 11:00:12 GMT 2007
>Originator:     Jason Bacon
>Release:        FreeBSD 5.4-RELEASE i386
>Organization:
Medical College of Wisconsin
>Environment:
System: FreeBSD smithers.neuro.mcw.edu 5.4-RELEASE FreeBSD 5.4-RELEASE #2: Wed Aug 24 14:54:53 CDT 2005 bacon@clone.neuro.mcw.edu:/usr/obj/usr/src/sys/clone i386


>Description:
This is a new port for the Neuroimaging Informatics Technology Initiative
(NIFTI) data format, which promotes interoperability among various 
neuroimaging tools such as AFNI, FSL, Caret, Freesurfer, etc.

>How-To-Repeat:
>Fix:

# This is a shell archive.  Save it in a file, remove anything before
# this line, and then unpack it by entering "sh file".  Note, it may
# create directories; files and directories will be owned by you and
# have default permissions.
#
# This archive contains:
#
#	science/nifticlib
#	science/nifticlib/pkg-descr
#	science/nifticlib/Makefile
#	science/nifticlib/pkg-plist
#	science/nifticlib/distinfo
#	science/nifticlib/files
#	science/nifticlib/files/patch-Makefile
#	science/nifticlib/files/nifticlib.1
#
echo c - science/nifticlib
mkdir -p science/nifticlib > /dev/null 2>&1
echo x - science/nifticlib/pkg-descr
sed 's/^X//' >science/nifticlib/pkg-descr << 'END-of-science/nifticlib/pkg-descr'
XNIfTI-1 is a new Analyze-style data format, proposed by the NIfTI DFWG
Xas a short-term measure to facilitate inter-operation of functional MRI
Xdata analysis software packages.
X
XWWW:	http://nifti.nimh.nih.gov/
END-of-science/nifticlib/pkg-descr
echo x - science/nifticlib/Makefile
sed 's/^X//' >science/nifticlib/Makefile << 'END-of-science/nifticlib/Makefile'
X# New ports collection makefile for:	nifticlib
X# Date created:		2007-04-27
X# Whom:			Jason W. Bacon
X#
X# $FreeBSD$
X#
X
XPORTNAME=	nifticlib
XPORTVERSION=	0.4
XCATEGORIES=	science graphics
XMASTER_SITES=	${MASTER_SITE_SOURCEFORGE}
XMASTER_SITE_SUBDIR=	niftilib
X
XMAINTAINER=	bacon@smithers.neuro.mcw.edu
XCOMMENT=	Neuroimaging Infoirmatics Technology Initiative data format
X
XUSE_GMAKE=	yes
X
XMAN1=		nifticlib.1
X
Xdo-install:
X	${INSTALL_PROGRAM} ${WRKSRC}/bin/* ${PREFIX}/bin
X	${INSTALL_DATA} ${WRKSRC}/lib/* ${PREFIX}/lib
X	${INSTALL_DATA} ${WRKSRC}/include/* ${PREFIX}/include
X	${INSTALL_MAN} ${FILESDIR}/nifticlib.1 ${PREFIX}/man/man1
X
X.include <bsd.port.mk>
END-of-science/nifticlib/Makefile
echo x - science/nifticlib/pkg-plist
sed 's/^X//' >science/nifticlib/pkg-plist << 'END-of-science/nifticlib/pkg-plist'
Xbin/nifti1_test
Xbin/nifti_stats
Xbin/nifti_tool
Xinclude/config.h
Xinclude/dbh.h
Xinclude/fslio.h
Xinclude/nifti1.h
Xinclude/nifti1_io.h
Xinclude/znzlib.h
Xlib/libfslio.a
Xlib/libniftiio.a
Xlib/libznz.a
END-of-science/nifticlib/pkg-plist
echo x - science/nifticlib/distinfo
sed 's/^X//' >science/nifticlib/distinfo << 'END-of-science/nifticlib/distinfo'
XMD5 (nifticlib-0.4.tar.gz) = d343dd156dcadab07181427d8b6a4eff
XSHA256 (nifticlib-0.4.tar.gz) = 0dbab306fa3b07621f54938bd5f32b80a4a9ea2e665e753adc223ba6c3340ed2
XSIZE (nifticlib-0.4.tar.gz) = 223814
END-of-science/nifticlib/distinfo
echo c - science/nifticlib/files
mkdir -p science/nifticlib/files > /dev/null 2>&1
echo x - science/nifticlib/files/patch-Makefile
sed 's/^X//' >science/nifticlib/files/patch-Makefile << 'END-of-science/nifticlib/files/patch-Makefile'
X--- Makefile.orig	Wed Sep  6 13:12:43 2006
X+++ Makefile	Fri Apr 27 09:04:12 2007
X@@ -15,21 +15,21 @@
X 
X 
X ## Compiler  defines
X-cc		=	gcc
X-CC		=	gcc
X-AR		=	ar
X-RANLIB  = ranlib
X-DEPENDFLAGS	=	-MM
X-GNU_ANSI_FLAGS	= 	-Wall -ansi -pedantic
X-ANSI_FLAGS	= 	${GNU_ANSI_FLAGS}
X-CFLAGS		=	$(ANSI_FLAGS)
X+cc		?=	gcc
X+CC		?=	gcc
X+AR		?=	ar
X+RANLIB  	?=	ranlib
X+DEPENDFLAGS	?=	-MM
X+GNU_ANSI_FLAGS	?= 	-Wall -ansi -pedantic
X+ANSI_FLAGS	?= 	${GNU_ANSI_FLAGS}
X+CFLAGS		?=	$(ANSI_FLAGS)
X 
X ## Command defines
X ## gmake does not work on MacOSX or some versions of linux MAKE  = gmake 
X-RM		=	rm
X-MV		=	mv
X-CP		=	cp
X-TAR		=	/opt/csw/bin/gtar ##/usr/freeware/bin/tar
X+RM		?=	rm
X+MV		?=	mv
X+CP		?=	cp
X+TAR		?=	/opt/csw/bin/gtar ##/usr/freeware/bin/tar
X 
X 
X ## Installation
END-of-science/nifticlib/files/patch-Makefile
echo x - science/nifticlib/files/nifticlib.1
sed 's/^X//' >science/nifticlib/files/nifticlib.1 << 'END-of-science/nifticlib/files/nifticlib.1'
X.TH NIFTICLIB 1
X.SH NAME    \" Section header
X.PP
X 
XNIFTICLIB - Neuroimaging Informatics Technology Initiative data format
X
X.SH "DESCRIPTION"
X
X.B Nifticlib
Xis a set of tools and libraries for maintaining a common data format
Xamong neuroimaging applications.  For documentation, please visit
Xhttp://nifti.nimh.nih.gov/
X
X.SH "SEE ALSO"
Xafni(1), fsl(1), caret(1)
X
X.SH AUTHOR
X.nf
X.na
XRobert Cox, PhD, et. al.
X
END-of-science/nifticlib/files/nifticlib.1
exit

>Release-Note:
>Audit-Trail:
Responsible-Changed-From-To: freebsd-ports-bugs->miwi 
Responsible-Changed-By: miwi 
Responsible-Changed-When: Fri Apr 27 15:00:43 UTC 2007 
Responsible-Changed-Why:  
I'll take it. 

http://www.freebsd.org/cgi/query-pr.cgi?pr=112183 
State-Changed-From-To: open->closed 
State-Changed-By: miwi 
State-Changed-When: Sat Apr 28 10:58:01 UTC 2007 
State-Changed-Why:  
New port added. Thanks! 

http://www.freebsd.org/cgi/query-pr.cgi?pr=112183 

From: dfilter@FreeBSD.ORG (dfilter service)
To: bug-followup@FreeBSD.org
Cc:  
Subject: Re: ports/112183: commit references a PR
Date: Sat, 28 Apr 2007 10:58:07 +0000 (UTC)

 miwi        2007-04-28 10:58:01 UTC
 
   FreeBSD ports repository
 
   Modified files:
     science              Makefile 
   Added files:
     science/nifticlib    Makefile distinfo pkg-descr pkg-plist 
     science/nifticlib/files nifticlib.1 patch-Makefile 
   Log:
   NIfTI-1 is a new Analyze-style data format, proposed by the NIfTI DFWG
   as a short-term measure to facilitate inter-operation of functional MRI
   data analysis software packages.
   
   WWW:    http://nifti.nimh.nih.gov/
   
   PR:             ports/112183
   Submitted by:   Jason W. Bacon
   
   Revision  Changes    Path
   1.114     +1 -0      ports/science/Makefile
   1.1       +27 -0     ports/science/nifticlib/Makefile (new)
   1.1       +3 -0      ports/science/nifticlib/distinfo (new)
   1.1       +21 -0     ports/science/nifticlib/files/nifticlib.1 (new)
   1.1       +36 -0     ports/science/nifticlib/files/patch-Makefile (new)
   1.1       +5 -0      ports/science/nifticlib/pkg-descr (new)
   1.1       +12 -0     ports/science/nifticlib/pkg-plist (new)
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>Unformatted:
