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Message-Id: <200611150725.kAF7PXHJ075885@www.freebsd.org>
Date: Wed, 15 Nov 2006 07:25:33 GMT
From: trasz<trasz@pin.if.uz.zgora.pl>
To: freebsd-gnats-submit@FreeBSD.org
Subject: math/sdpara build fails with undefined reference to some mpi function
X-Send-Pr-Version: www-3.0

>Number:         105550
>Category:       ports
>Synopsis:       math/sdpara build fails with undefined reference to some mpi function
>Confidential:   no
>Severity:       serious
>Priority:       medium
>Responsible:    maho
>State:          closed
>Quarter:        
>Keywords:       
>Date-Required:  
>Class:          sw-bug
>Submitter-Id:   current-users
>Arrival-Date:   Wed Nov 15 07:30:02 GMT 2006
>Closed-Date:    Sun Nov 19 06:49:35 GMT 2006
>Last-Modified:  Sun Nov 19 06:50:12 GMT 2006
>Originator:     trasz
>Release:        6.1
>Organization:
>Environment:
FreeBSD pin.if.uz.zgora.pl 6.1-RELEASE FreeBSD 6.1-RELEASE #0: Sat Jun  3 01:12:10 CEST 2006     trasz@pin.if.uz.zgora.pl:/usr/obj/usr/src/sys/PIN  i386
>Description:
Build of math/sdpara fails with:

[..]

/usr/local/mpich/bin/mpiCC -O2 -fno-strict-aliasing -pipe -c -I. -I/usr/local/include rsdpa_mpicopy.cpp
/usr/local/mpich/bin/mpif77 -O -c rsdpa_rpdpotrf.f
/usr/local/mpich/bin/mpif77 -O -c rsdpa_rpdpotf2.f
/usr/local/mpich/bin/mpiCC -O2 -fno-strict-aliasing -pipe -c -I. -I/usr/local/include rsdpa_pdpotrf.cpp
/usr/local/mpich/bin/mpiCC -O2 -fno-strict-aliasing -pipe -c -I. -I/usr/local/include rsdpa_cg.cpp
/usr/local/mpich/bin/mpiCC -O3   -o sdpara rsdpa_main.o rsdpa_tool.o rsdpa_algebra.o rsdpa_struct.o rsdpa_parts.o rsdpa_io.o rsdpa_dpotrf.o rsdpa_mpist.o rsdpa_mpicopy.o rsdpa_rpdpotrf.o rsdpa_rpdpotf2.o rsdpa_pdpotrf.o rsdpa_cg.o \
  -L/usr/local/lib -lscalapack -lblacs -lblacsc -lblacs -lalapack -lcblas -lf77blas -latlas -lg2c
/usr/local/lib/libblacs.a(bi_f77_get_constants.o)(.data+0x0): undefined reference to `mpi_conversion_fn_null__'
/usr/local/lib/libblacs.a(bi_f77_get_constants.o)(.data+0x4): undefined reference to `mpi_type_null_copy_fn__'
/usr/local/lib/libblacs.a(bi_f77_get_constants.o)(.data+0x8): undefined reference to `mpi_type_null_delete_fn__'
/usr/local/lib/libblacs.a(bi_f77_get_constants.o)(.data+0xc): undefined reference to `mpi_type_dup_fn__'
/usr/local/lib/libblacs.a(bi_f77_get_constants.o)(.data+0x10): undefined reference to `mpi_win_null_copy_fn__'
/usr/local/lib/libblacs.a(bi_f77_get_constants.o)(.data+0x14): undefined reference to `mpi_win_null_delete_fn__'
/usr/local/lib/libblacs.a(bi_f77_get_constants.o)(.data+0x18): undefined reference to `mpi_win_dup_fn__'
/usr/local/lib/libblacs.a(bi_f77_get_constants.o)(.data+0x1c): undefined reference to `mpi_comm_null_copy_fn__'
/usr/local/lib/libblacs.a(bi_f77_get_constants.o)(.data+0x20): undefined reference to `mpi_comm_null_delete_fn__'
/usr/local/lib/libblacs.a(bi_f77_get_constants.o)(.data+0x24): undefined reference to `mpi_comm_dup_fn__'
gmake: *** [sdpara] Error 1
*** Error code 2

Stop in /usr/ports/math/sdpara.

>How-To-Repeat:

>Fix:

>Release-Note:
>Audit-Trail:
Responsible-Changed-From-To: freebsd-ports-bugs->maho 
Responsible-Changed-By: edwin 
Responsible-Changed-When: Wed Nov 15 07:30:28 UTC 2006 
Responsible-Changed-Why:  
Over to maintainer 

http://www.freebsd.org/cgi/query-pr.cgi?pr=105550 
State-Changed-From-To: open->closed 
State-Changed-By: maho 
State-Changed-When: Sun Nov 19 06:48:33 UTC 2006 
State-Changed-Why:  
Acutally this is not my error.  
In your updates, blacs/scalapack are linked 
against mpich2. However, sdpara should not link 
against mpich. Mixing mpich2/mpich caused an error. 
I think we should move to mpich2, so I committed a fix. 
thanks for your report. 

http://www.freebsd.org/cgi/query-pr.cgi?pr=105550 

From: dfilter@FreeBSD.ORG (dfilter service)
To: bug-followup@FreeBSD.org
Cc:  
Subject: Re: ports/105550: commit references a PR
Date: Sun, 19 Nov 2006 06:48:24 +0000 (UTC)

 maho        2006-11-19 06:48:16 UTC
 
   FreeBSD ports repository
 
   Modified files:
     math/sdpara          Makefile 
     math/sdpara/files    patch-Makefile 
   Log:
   Fix build error. Now blacs/scalapack are linked
   against mpich2, and sdpara should not link
   against mpich. Mixing mpich2/mpich caused an error.
   
   PR:             105550
   
   Revision  Changes    Path
   1.15      +1 -1      ports/math/sdpara/Makefile
   1.3       +3 -3      ports/math/sdpara/files/patch-Makefile
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>Unformatted:
