This is the source distribution for Fungimol version FUNGIMOL_VERSION.

Fungimol is a extensible system that allows one to design atomic-scale
objects.

For simple distribution, it includes Fortran code for Brennermd, which
is a molecular dynamics package for hydrocarbon chemistry.  Brennermd
is also available as a separate package.

Full HTML documentation starts at the file doc/index.html.

Copyright notices are in NOTICES.txt and the license is in COPYING.txt.

Brennermd source is in the brenner directory.

To compile Fungimol for development, give one of the following commands:

   make NDEBUG=yes
      (production build)
   make
      (debug build)

and run the executable named App/debug/fungimol or App/nodebug/fungimol.

To compile both Fungimol and Brennermd from scratch for installation,
edit the Makefile to suit your taste, then give this command:

   make rebuild

To install, do a "make rebuild" (you need not be root) and then give
this command as root:

   make install

To uninstall, give this command as root:

   make uninstall

but be careful with "make uninstall", since it uses rm -rf to remove
the directories named DOCHOME and INCLUDEHOME in the Makefile.  If
DOCHOME is something like /usr/doc/fungimol-n.n.n and INCLUDEHOME is
something like /usr/include/fungimol, this is okay.  If DOCHOME is
/usr/doc or INCLUDEHOME is /usr/include, then you don't want to do
"make uninstall".  If you used rpm to install and you use rpm to
uninstall, the uninstall target is not used so you don't have to worry
about this.

If you just want to be able to do molecular dynamics, then you'll also
want to follow the instructions in brenner/README.LINUXBUILD.

Copyright 2000 Tim Freeman
tim@infoscreen.com

