Copyright notices for Fungimol version FUNGIMOL_VERSION:

Fungimol itself is Copyright (C) 2000 Tim Freeman.  It is subject to
the GNU Library General Public License as follows:

   This library is free software; you can redistribute it and/or
   modify it under the terms of the GNU Library General Public
   License as published by the Free Software Foundation; either
   version 2 of the License, or (at your option) any later version.

   This library is distributed in the hope that it will be useful,
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
   Library General Public License for more details.

   You should have received a copy of the GNU Library General Public
   License along with this library in the file COPYING.txt; if not,
   write to the Free Software Foundation, Inc., 59 Temple Place -
   Suite 330, Boston, MA 02111-1307, USA

The author can be reached by email at tim@infoscreen.com, or by
paper mail at:

   Tim Freeman
   381 N. Fernwood Circle
   Sunnyvale, CA 94085-3059

The matrix inversion routine in LinearAlgebra/Matrix4.cpp is from the
Mesa 3.1 distribution, file src-glu/project.c file.  The routine was
apparently contributed by Jacques Leroy jle@star.be, and is Copyright
1995-1999 Brian Paul.  It is subject to the GNU Library General Public
License version 2, same as described above for Fungimol.

According to the README file for Mesa 3.1, Brian Paul can be reached
by email at brian_paul@mesa3d.org, or by paper mail at:

   Brian Paul
   Avid Technology
   1925 Andover St.
   Tewksbury, MA  01876

Fungimol uses header files from glibc 2.1.1, so it is a derivative
work of that package.  The package is subject to GNU Library General
Public License version 2, under the same conditions as described for
Fungimol immediately above.  You can find source at
ftp://prep.ai.mit.edu/pub/gnu/glibc/.  It is Copyright (C) 1992, 93,
94, 95, 96, 97, 98, 99 Free Software Foundation.

Fungimol uses the X11 and Xext libraries, which are from the XFree86
3.3.5 distribution.  It statically links against these libraries, so
it is a derivative work of XFree86.  You can download source for
XFree86 from http://www.xfree86.org.  It is subject to this license
(found on my system at
/usr/src/RPM/BUILD/XFree86-3.3.5/xc/INSTALL.TXT):

   Copyright (C) 1995, 1996 X Consortium
   
   Permission is hereby granted, free of charge, to any person obtaining a
   copy of this software and associated documentation files (the "Soft-
   ware"), to deal in the Software without restriction, including without
   limitation the rights to use, copy, modify, merge, publish, distribute,
   sublicense, and/or sell copies of the Software, and to permit persons to
   whom the Software is furnished to do so, subject to the following condi-
   tions:
   
   The above copyright notice and this permission notice shall be included
   in all copies or substantial portions of the Software.
   
   THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
   OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABIL-
   ITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.  IN NO EVENT
   SHALL THE X CONSORTIUM BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABIL-
   ITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
   OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS
   IN THE SOFTWARE.
   
   Except as contained in this notice, the name of the X Consortium shall
   not be used in advertising or otherwise to promote the sale, use or
   other dealings in this Software without prior written authorization from
   the X Consortium.
   
   X Window System is a trademark of X Consortium, Inc.

Fungimol also uses libppm, libpgm, and libpbm to write .ppm files
while recording movies from the screen.  It statically links against
these libraries, so it is a derivative work of them.  These libraries
are from libgr-2.0.3, which according to the ANNOUNCE-2.0.3 file from
the Mandrake 6.1 source CD, is available from
ftp.ctd.comsat.com:/pub/linux/ELF.  The specific libraries used are
Copyright (C) 1989, 1991 by Tony Hansen and Jef Poskanzer, and the
collection is maintained by Neal Becker (neal@ctd.comsat.com).  Each
source file has its own copyright notice and I hope they are the same
as each other; the one from ppm/libppm4.c says:

** Copyright (C) 1989 by Jef Poskanzer.
**
** Permission to use, copy, modify, and distribute this software and its
** documentation for any purpose and without fee is hereby granted, provided
** that the above copyright notice appear in all copies and that both that
** copyright notice and this permission notice appear in supporting
** documentation.  This software is provided "as is" without express or
** implied warranty.

Fungimol includes Fortran source code for Brennermd, which is a
molecular dynamics package released into the public domain by Donald
Brenner on February 29, 2000.

The binary distribution of Fungimol includes the binaries for
Brennermd, which I generated with the g77 Fortran compiler.  During
linking, the g77 version of libf2c (which is installed as libg2c.a)
was included in the brennermd binary, so the binary distribution of
Fungimol is a derivative work of the g77 version of libf2c.  According
to the source code for libf2c, it comes from
ftp:bell-labs.com/netlib/f2c/ and is maintained by David M. Gay
<dmg@bell-labs.com>.  It is distributed subject to the following
conditions:

   /****************************************************************
   Copyright 1990 - 1997 by AT&T, Lucent Technologies and Bellcore.
   
   Permission to use, copy, modify, and distribute this software
   and its documentation for any purpose and without fee is hereby
   granted, provided that the above copyright notice appear in all
   copies and that both that the copyright notice and this
   permission notice and warranty disclaimer appear in supporting
   documentation, and that the names of AT&T, Bell Laboratories,
   Lucent or Bellcore or any of their entities not be used in
   advertising or publicity pertaining to distribution of the
   software without specific, written prior permission.
   
   AT&T, Lucent and Bellcore disclaim all warranties with regard to
   this software, including all implied warranties of
   merchantability and fitness.  In no event shall AT&T, Lucent or
   Bellcore be liable for any special, indirect or consequential
   damages or any damages whatsoever resulting from loss of use,
   data or profits, whether in an action of contract, negligence or
   other tortious action, arising out of or in connection with the
   use or performance of this software.
   ****************************************************************/

Similarly, g77 uses libU77, which is subject to the GNU Library
General Public License just like Fungimol.  According to the README
file for libU77, it is maintained by Dave Love <d.love@dl.ac.uk> and
Craig Burley <burley@gnu.org>.  I received source code for libU77 with
the GCC sources, which according to the included FAQ are available
from http://gcc.gnu.org/index.html.

The documentation for Fungimol includes compressed GIF's.  As of 17
Mar 2000, generating compressed GIF's requires using a patent owned by
Unisys.  Apparently, distributing GIF's compressed by a program for
which license fees were not paid to Unisys occasionaly results in
Unisys taking legal action against the entity distributing the GIF's
for contibutory infringement of the patent.  On 17 Mar 2000, I
purchased a copy of GIF Construction Set Professional from Alchemy
Mindworks at http://www.mindworkshop.com/alchemy/alchemy.html and used
it to compress the GIF's in the document; before this time they were
uncompressed.  According to the page at
http://www.mindworkshop.com/alchemy/lzw.html, if I use a purchased
version their software to compress GIF's, I have fulfilled my
obligation to Unisys.  The page at
http://www.gnu.org/philosophy/gif.html provides more information about
the Unisys patent controversy.  If browsers supported the MNG format,
I could have used PNG's and MNG's for the document instead of GIF's.
If modems were much faster, I could have used uncompressed GIF's.
