From owner-comp-bio@hgmp.mrc.ac.uk Mon Jan 8 20:20:35 2001 Return-Path: Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 110) id BAFF017B08; Mon, 8 Jan 2001 20:20:32 +0000 (GMT) Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 6023) id D75D817B06; Mon, 8 Jan 2001 20:20:27 +0000 (GMT) Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 6024) id B4C8517A78; Sun, 7 Jan 2001 19:06:38 +0000 (GMT) Received: from mailbox3.ucsd.edu (mailbox3.ucsd.edu [132.239.1.55]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 3031C415D4 for ; Sun, 7 Jan 2001 19:06:27 +0000 (GMT) Received: from mail.deja.com (mail.deja.com [64.57.170.34]) by mailbox3.ucsd.edu (8.11.0/8.11.0) with ESMTP id f07J6Qk14073 for ; Sun, 7 Jan 2001 11:06:26 -0800 (PST) Received: from nnrp1.deja.com (nnrp1.deja.com [10.12.2.16]) by mail.deja.com (8.11.1/8.11.1) with ESMTP id f07J6PB19770 for ; Sun, 7 Jan 2001 13:06:25 -0600 Received: (news@localhost) by nnrp1.deja.com (8.7.6/8.6.12) id NAA31149; Sun, 7 Jan 2001 13:06:19 -0600 To: bionet-biology-computational@moderators.isc.org From: vinpan@my-deja.com Newsgroups: bionet.biology.computational Subject: Pathways and graphs Organization: Deja.com Message-ID: <93aenb$udb$1@nnrp1.deja.com> X-Article-Creation-Date: Sun Jan 07 19:06:22 2001 GMT X-Http-User-Agent: Mozilla/4.0 (compatible; MSIE 5.0; Windows 95; DigExt) X-Http-Proxy: 1.1 x68.deja.com:80 (Squid/1.1.22) for client 198.81.209.19 X-MyDeja-Info: XMYDJUIDvinpan Date: Mon, 8 Jan 2001 20:20:27 +0000 (GMT) Sender: owner-comp-bio@hgmp.mrc.ac.uk Precedence: bulk Hi, I am trying to relate pathway database and gene expression data. For complete automation, one needs the pathways not in GIF image format(as in kegg database) but in some text format that specifies the graph of reaction labelled by enzymes or genes. Is anyone aware of text representations of the pathways? Any help will be great. Thanks a lot. Vinayak IBM India Research Lab Sent via Deja.com http://www.deja.com/ .