From owner-dros@hgmp.mrc.ac.uk Wed Jun 25 14:32:14 2003 Return-Path: X-Original-To: dros-outgoing Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with SMTP id E099C7D172 for ; Wed, 25 Jun 2003 14:32:13 +0100 (BST) X-Original-To: dros-list@hgmp.mrc.ac.uk Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 7536E7D145 for ; Wed, 25 Jun 2003 14:32:13 +0100 (BST) Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 6020) id 6B8627D24A; Wed, 25 Jun 2003 14:32:12 +0100 (BST) X-Original-To: bionet-drosophila@net.bio.net Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id CE0667D0F7 for ; Tue, 24 Jun 2003 23:02:08 +0100 (BST) Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 60001) id D45397D116; Tue, 24 Jun 2003 23:02:07 +0100 (BST) To: bionet-drosophila@net.bio.net From: tomer@flyeye.ucsd.edu (Tomer Avidor-Reiss) Newsgroups: bionet.drosophila Subject: Help-EST that much each gene Organization: BIOSCI/MRC Human Genome Mapping Project Resource Centre Message-ID: Mime-Version: 1.0 Content-Type: multipart/alternative; boundary="============_-1155630373==_ma============" X-Original-To: dros@net.bio.net X-Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 54CF17D0F7 for ; Tue, 24 Jun 2003 23:02:06 +0100 (BST) X-Received: from flyeye.ucsd.edu (flyeye.ucsd.edu [132.239.22.2]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id A62C57D116 for ; Tue, 24 Jun 2003 23:02:04 +0100 (BST) X-Received: from [132.239.22.54] (flyeye-54.ucsd.edu [132.239.22.54]) by flyeye.ucsd.edu (8.12.9/8.12.9/IH) with ESMTP id h5OM22QA008387 for ; Tue, 24 Jun 2003 15:02:02 -0700 (PDT) X-To: dros@net.bio.net Date: Wed, 25 Jun 2003 14:32:12 +0100 (BST) Sender: owner-dros@hgmp.mrc.ac.uk Precedence: bulk --============_-1155630373==_ma============ Content-Type: text/plain; charset="us-ascii" ; format="flowed" Hi, I would like to identify all EST that much each gene (CGxxxx). I would like to do it to all known Drosophila genes. Is there a place this information is found to download or other way to get? I found that in when I look at "FlyBase GadFly Genome Annotation Database" each gene has all the EST that much a certain gene under the category EST, but I was not able to identify the location of this information. I will appreciate very much if you could help me. Tomer For example the gene Khc or CG7765 has annotated as having the following EST: GM01565 GM08737 GM14862 HL03525 GH08824 LD23969 LD17901 GM18066 LD26478 HL03088 GH16739 SD09090 RE09141 LD43857 Annotation of gene Khc Summary Location 2R 53A2-53A3 Scaffold AE003807 GenBank AE003807 view image Length (strand) 5014 (-) Peptides view analysis FBid FBgn0001308 cDNA GM14862 SD02406 EST GM01565 GM08737 GM14862 HL03525 GH08824 LD23969 LD17901 GM18066 LD26478 HL03088 GH16739 SD09090 RE09141 LD43857 Affy Oligo 141504_at Feedback Fix annotation error Source Release 3 Annotated Genome Sequence (FAQ) Tomer Avidor-Reiss, Ph.D. Department of Biology University of California, San Diego CMM West Room 359 La Jolla, CA 92093-0649 lab: (858) 534-5423 fax: (858) 534-8510 e-mail: tomer@flyeye.ucsd.edu --============_-1155630373==_ma============ Content-Type: text/html; charset="us-ascii" Help-EST that much each gene
Hi,
I would like to identify all EST that much each gene (CGxxxx). I would like to do it to all known Drosophila genes. Is there a place this information is found to download or other way to get?
I found that in when I look at "FlyBase GadFly Genome Annotation Database" each gene has all the EST that much a certain gene under the category EST, but I was not able to identify the location of this information.
I will appreciate very much if you could help me.
Tomer

For example the gene Khc or CG7765 has annotated as having the following EST: GM01565 GM08737 GM14862 HL03525 GH08824 LD23969 LD17901 GM18066 LD26478 HL03088 GH16739 SD09090 RE09141 LD43857


Annotation of gene Khc
Summary
Location        2R  53A2-53A3
Scaffold   AE003807 GenBank
        AE003807 view image
Length (strand)      5014 (-)
Peptides        view analysis
FBid       FBgn0001308
cDNA GM14862 SD02406
EST      GM01565 GM08737 GM14862
HL03525 GH08824 LD23969
LD17901 GM18066 LD26478
HL03088 GH16739 SD09090
RE09141 LD43857
Affy Oligo   141504_at
Feedback       Fix annotation error
Source      Release 3 Annotated Genome Sequence
(FAQ)
Tomer Avidor-Reiss, Ph.D.
Department of Biology
University of California, San Diego
CMM West Room 359
La Jolla, CA 92093-0649
lab: (858) 534-5423
fax: (858) 534-8510
e-mail: tomer@flyeye.ucsd.edu
--============_-1155630373==_ma============-- --- .