From owner-comp-bio@hgmp.mrc.ac.uk  Thu Nov  8 01:51:43 2001
Return-Path: <owner-comp-bio@hgmp.mrc.ac.uk>
Received: from localhost (localhost [127.0.0.1])
	by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 5D46B17B7F
	for <comp-bio-outgoing>; Thu,  8 Nov 2001 01:51:42 +0000 (GMT)
Received: from localhost (localhost [127.0.0.1])
	by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 44BD217B89
	for <comp-bio-list@hgmp.mrc.ac.uk>; Thu,  8 Nov 2001 01:51:40 +0000 (GMT)
Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 6023)
	id 6443D17B7F; Thu,  8 Nov 2001 01:51:34 +0000 (GMT)
Received: from localhost (localhost [127.0.0.1])
	by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 55D9F17B20
	for <bionet-biology-computational@net.bio.net>; Wed,  7 Nov 2001 03:51:21 +0000 (GMT)
Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 60001)
	id D0C0917B1E; Wed,  7 Nov 2001 03:51:17 +0000 (GMT)
To: bionet-biology-computational@net.bio.net
From: akozik@2xtreme.net (Alexander)
Newsgroups: bionet.biology.computational
Subject: GenomePixelizer update
Organization: BIOSCI/MRC Human Genome Mapping Project Resource Centre
Message-ID: <3BE8AF3F.F084171B@2xtreme.net>
MIME-Version: 1.0
Content-Type: text/plain; charset=us-ascii
Content-Transfer-Encoding: 7bit
X-Received: from localhost (localhost [127.0.0.1])
	by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id E228D17B24
	for <comp-bio@net.bio.net>; Wed,  7 Nov 2001 03:51:13 +0000 (GMT)
X-Received: from latte.2xtreme.net (2xtreme.net [209.63.222.34])
	by mercury.hgmp.mrc.ac.uk (Postfix) with SMTP id F2DFD17B1E
	for <comp-bio@net.bio.net>; Wed,  7 Nov 2001 03:51:02 +0000 (GMT)
X-Received: (qmail 28006 invoked from network); 7 Nov 2001 03:51:01 -0000
X-Received: from 66-81-20-55-modem.o1.com (HELO 2xtreme.net) (66.81.20.55)
  by 2xtreme.net with SMTP; 7 Nov 2001 03:51:01 -0000
X-Mailer: Mozilla 4.77 [en] (X11; U; Linux 2.4.9 i686)
X-Accept-Language: en
X-To: comp-bio@net.bio.net
Date: Thu,  8 Nov 2001 01:51:34 +0000 (GMT)
Sender: owner-comp-bio@hgmp.mrc.ac.uk
Precedence: bulk

New version of GenomePixelizer is available at:

http://www.atgc.org/GenomePixelizer/GenomePixelizer_Welcome.html
http://niblrrs.ucdavis.edu/GenomePixelizer/GenomePixelizer_Welcome.html

What is new (November 7, 2001):

"Locus Zoomer" procedure;
GenomePixelizer allows to zoom in semi-automatic mode into regions
of interest and generate sub-projects by extracting data from whole
dataset. You may find an example at:

http://www.atgc.org/GenomePixelizer/Duplications/Ath_Duplications.html
http://niblrrs.ucdavis.edu/GenomePixelizer/Duplications/Ath_Duplications.html

"Gene Painter" procedure; GenomePixelizer allows to paint different
set of genes in different colors in batch mode dynamically, without
re-running the project.
"Matrix Color Tuner" procedure; GenomePixelizer allows to assign
color for "similarity/identity" lines based on distance matrix file
data dynamically, without changing the source of input file.

Alexander Kozik
Department of Vegetable Crops,
University of California at Davis.
http://www.atgc.org
email: akozik@atgc.org



---


.