From owner-bionews@hgmp.mrc.ac.uk Mon Jan 13 06:43:51 2003 Return-Path: X-Original-To: bionews-outgoing Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with SMTP id 0A27E7D0FE for ; Mon, 13 Jan 2003 06:43:51 +0000 (GMT) X-Original-To: bionews-list@hgmp.mrc.ac.uk Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 856977D12F for ; Mon, 13 Jan 2003 06:43:50 +0000 (GMT) Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 6022) id AE2927D0FE; Mon, 13 Jan 2003 06:43:49 +0000 (GMT) X-Original-To: bionews-submit@hgmp.mrc.ac.uk Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 878767D18D for ; Sat, 11 Jan 2003 01:42:37 +0000 (GMT) Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 60001) id 09C947D12D; Sat, 11 Jan 2003 01:42:37 +0000 (GMT) To: bionet-announce@net.bio.net From: solovyev@bcm.tmc.edu (Victor V. Solovyev) Newsgroups: bionet.announce Subject: RAT draft genome annotations fgenesh++ Organization: BIOSCI/MRC Human Genome Mapping Project Resource Centre Message-ID: <200301110142.TAA29532@owl.cellb.bcm.tmc.edu> X-Original-To: bionews@hgmp.mrc.ac.uk X-Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id F322C7D18D for ; Sat, 11 Jan 2003 01:42:34 +0000 (GMT) X-Received: from cuda.corp.bcm.tmc.edu (cuda.corp.bcm.tmc.edu [128.249.38.12]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 288ED7D12D for ; Sat, 11 Jan 2003 01:42:33 +0000 (GMT) X-Received: from ladon.corp.bcm.tmc.edu (ladon.corp.bcm.tmc.edu [128.249.38.46]) by cuda.corp.bcm.tmc.edu (8.8.8/8.8.8) with SMTP id TAA21686 for ; Fri, 10 Jan 2003 19:42:31 -0600 (CST) X-Received: from bran.bcm.tmc.edu ([128.249.159.58]) by ladon.corp.bcm.tmc.edu (SAVSMTP 3.0.0.44) with SMTP id M2003011019312909050 for ; Fri, 10 Jan 2003 19:31:29 -0600 X-Received: from owl.cellb.bcm.tmc.edu (owl.cellb.bcm.tmc.edu [128.249.137.211]) by bran.bcm.tmc.edu (8.8.8/8.8.8) with ESMTP id TAA12513 for ; Fri, 10 Jan 2003 19:42:29 -0600 (CST) X-Received: (from solovyev@localhost) by owl.cellb.bcm.tmc.edu (8.8.8/8.8.8) id TAA29532 for bionews@net.bio.net; Fri, 10 Jan 2003 19:42:29 -0600 (CST) X-To: bionews@net.bio.net Date: Mon, 13 Jan 2003 06:43:49 +0000 (GMT) Sender: owner-bionews@hgmp.mrc.ac.uk Precedence: bulk ==== RAT draft genome annotations fgenesh++ We're pleased to announce the release of fgenesh++ gene annotation on the Nov. 2002 rat assembly produced by the Baylor College of Medicine Rat Genome Sequencing Center and the Rat Genome Sequencing Consortium. You can see/get gene annoation at UCSC Genome Browser on Rat Nov. 2002 Freeze http://genome.ucsc.edu/cgi-bin/hgGateway?org=Rat or alternatively in GenomeExplorer: http://www.softberry.com/berry.phtml?topic=ratexp Fgenesh++ annotated: 43008 genes includes 28955 genes supported by NR proteins, among them 3763 genes correponding RAT refseq mRNA ID and Name of similar protein added after ## in name line of fasta files *.pro Refseq corresponding proteins additionally marked NM_.. Fgenesh++ predictions are based on complex fully automatic script that mapped known Refseq RNA, predict genes and refine predicted genes that have protein support from other organisms. Reference: Solovyev V.V. (2001) Statistical approaches in Eukaryotic gene prediction. In Handbook of Statistical genetics (eds. Balding D. et al.), John Wiley & Sons, Ltd., p. 83-127.) --- .