From owner-bionews@hgmp.mrc.ac.uk Tue Jun 19 07:41:38 2001 Return-Path: Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id E30B217AA2 for ; Tue, 19 Jun 2001 07:41:36 +0100 (BST) Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id A663217B18 for ; Tue, 19 Jun 2001 07:41:34 +0100 (BST) Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 6022) id 6529C17AA2; Tue, 19 Jun 2001 07:41:31 +0100 (BST) Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 829AB17A95 for ; Mon, 18 Jun 2001 11:28:43 +0100 (BST) Received: from niobium.hgmp.mrc.ac.uk (niobium [193.62.192.41]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 11BA117A8C for ; Mon, 18 Jun 2001 11:28:31 +0100 (BST) Received: (from news@localhost) by niobium.hgmp.mrc.ac.uk (8.9.3+Sun/8.8.8) id LAA08782 for bionet-announce@net.bio.net; Mon, 18 Jun 2001 11:28:30 +0100 (BST) To: bionet-announce@net.bio.net From: Maria Jesus Martin Newsgroups: bionet.announce Subject: Release 17 of TREMBL, a protein sequence database supplementing SWISS-PROT Organization: EMBL-EBI Message-ID: <3B2DD7CE.2740047D@ebi.ac.uk> Reply-To: martin@ebi.ac.uk Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Trace: niobium.hgmp.mrc.ac.uk 992860110 8773 193.62.196.237 (18 Jun 2001 10:28:30 GMT) X-Complaints-To: news@net.bio.net NNTP-Posting-Date: Mon, 18 Jun 2001 10:28:30 +0000 (UTC) X-Mailer: Mozilla 4.76 [en] (X11; U; Linux 2.2.17-14 i686) X-Accept-Language: en X-NNTP-Posting-Host: burns.ebi.ac.uk Date: Tue, 19 Jun 2001 07:41:31 +0100 (BST) Sender: owner-bionews@hgmp.mrc.ac.uk Precedence: bulk INTRODUCTION ============ TrEMBL is a protein sequence database supplementing the SWISS-PROT Protein Sequence Data Bank. TrEMBL contains the translations of all coding sequences (CDS) present in the EMBL Nucleotide Sequence Database not yet integrated in SWISS-PROT. TrEMBL can be considered as a preliminary section of SWISS-PROT. For all TrEMBL entries which should finally be upgraded to the standard SWISS-PROT quality, SWISS-PROT accession numbers have been assigned. RELEASE 17.0 OF TrEMBL ===================== This TrEMBL release was created from the EMBL Nucleotide Sequence Database release 66 and updates up to 01.05.01 and contains 540'195 sequence entries, comprising 155'771'315 amino acids. To minimize redundancy, the translations of all coding sequences (CDS) in the EMBL Nucleotide Sequence Database already included in SWISS-PROT release 39.21. TrEMBL is split in two main sections: SP-TrEMBL and REM-TrEMBL: SP-TrEMBL (SWISS-PROT TrEMBL) contains the entries (473'505) which should beeventually incorporated into SWISS-PROT. SWISS-PROT accession numbers have been assigned for all SP-TrEMBL entries. SP-TrEMBL is organized in subsections: arc.dat (Archaea): 14653 entries fun.dat (Fungi): 12773 entries hum.dat (Human): 24037 entries inv.dat (Invertebrates): 56712 entries mam.dat (Other Mammals): 8380 entries mhc.dat (MHC proteins): 6821 entries org.dat (Organelles): 41900 entries phg.dat (Bacteriophages): 3895 entries pln.dat (Plants): 50780 entries pro.dat (Prokaryotes): 113140 entries rod.dat (Rodents): 12312 entries unc.dat (Unclassified): 135 entries vrl.dat (Viruses): 108495 entries vrt.dat (Other Vertebrates): 9812 entries 54'960 new entries have been integrated in SP-TrEMBL. The sequences of 609 SP-TrEMBL entries have been updated and the annotation has been updated in 299'529 entries. In the document deleteac.txt, you will find a list of all accession numbers which were previously present in TrEMBL, but which have now been deleted from the database. REM-TrEMBL (REMaining TrEMBL) contains the entries (66'690) that we do not want to include in SWISS-PROT. ACCESS/DATA DISTRIBUTION ======================== FTP server: ftp.ebi.ac.uk/pub/databases/trembl SRS server: http://srs.ebi.ac.uk/ TrEMBL is also available on the SWISS-PROT CD-ROM. SWISS-PROT + TrEMBL is searchable on the following servers at the EBI: FASTA3 (http://www.ebi.ac.uk/fasta3/) BLAST2 (http://www.ebi.ac.uk/blast2/) Bic_sw (http://www.ebi.ac.uk/bic_sw/) Scanps (http://www.ebi.ac.uk/scanps/) MPSrch (http://www.ebi.ac.uk/MPsrch/) TrEMBL HAS BEEN PREPARED BY: ============================ Rolf Apweiler, Kirsty Bates, Margaret Biswas, Sergio Contrino, Kirill Degtyarenko, Wolfgang Fleischmann, Gill Fraser, Henning Hermjakob, Vivien Junker, Alexander Kanapin, Youla Karavidopoulou, Paul Kersey, Minna Lehvaslaiho, Michele Magrane, Maria Jesus Martin, Nicoletta Mitaritonna, Virginie Mittard, Steffen Moeller, Nicola Mulder, Claire O'Donovan, John F. O'Rourke, Isabelle Phan, Sandrine Pilbout, Eleanor Whitfield and Allyson Williams at the EMBL Outstation - European Bioinformatics Institute (EBI) in Hinxton, UK; Amos Bairoch and Alain Gateau at the Swiss Institute of Bioinformatics in Geneva, Switzerland. ----------------------------------------------------------------- Maria Jesus Martin email:martin@ebi.ac.uk EMBL Outstation EBI (European Bioinformatics Institute) URL: http://www.ebi.ac.uk Wellcome Trust Genome Campus Tel: +44 (1223) 494408 Hinxton fax: +44 (1223) 494468 Cambridge CB10 1SD UK ----------------------------------------------------------------- .