From owner-comp-bio@hgmp.mrc.ac.uk Fri Feb 8 02:06:03 2002 Return-Path: Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id AF1E817BA2 for ; Fri, 8 Feb 2002 02:05:59 +0000 (GMT) Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id A0E5F17BA1 for ; Fri, 8 Feb 2002 02:05:49 +0000 (GMT) Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 6023) id A28DC17BA5; Fri, 8 Feb 2002 02:05:46 +0000 (GMT) Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 8937C17B00 for ; Thu, 7 Feb 2002 23:55:26 +0000 (GMT) Received: by mercury.hgmp.mrc.ac.uk (Postfix, from userid 60001) id 8493F17AE8; Thu, 7 Feb 2002 23:55:25 +0000 (GMT) To: bionet-biology-computational@net.bio.net From: akozik@2xtreme.net (Alexander Kozik) Newsgroups: bionet.biology.computational Subject: PhyloGrapher update Organization: UC Davis, Dept of Vegetable Crops Message-ID: <3C6313E6.A5A207A4@2xtreme.net> MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 4E8A617B00 for ; Thu, 7 Feb 2002 23:55:22 +0000 (GMT) X-Received: from ike.ucdavis.edu (ike.ucdavis.edu [169.237.105.6]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 9075C17AE8 for ; Thu, 7 Feb 2002 23:55:20 +0000 (GMT) X-Received: from 2xtreme.net (xpenguin.ucdavis.edu [169.237.8.110]) by ike.ucdavis.edu (8.11.4/8.11.0/IT4.5.1) with ESMTP id g17NtJw03005 for ; Thu, 7 Feb 2002 15:55:19 -0800 (PST) X-Mailer: Mozilla 4.73 [en] (X11; U; Linux 2.2.17 i686) X-Accept-Language: ru, en X-To: comp-bio@net.bio.net Date: Fri, 8 Feb 2002 02:05:46 +0000 (GMT) Sender: owner-comp-bio@hgmp.mrc.ac.uk Precedence: bulk PhyloGrapher is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements). PhyloGrapher is a drawing tool that generates custom graphs for the given set of elements. In general, it is possible to use PhyloGrapher to visualize any type of relations between elements. PhyloGrapher is written in Tcl/Tk and optimized for Linux. Also it works on Windows. PhyloGrapher is under GNU General Public License and freely available at: http://www.atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html Current version contains a graphical viewer results of FASTA/SSEARCH: http://www.atgc.org/PhyloGrapher/fasta_viewer_02.gif PhyloGrapher parses results of search and represents all data graphically what simplify the validation of given alignment. Also, web site contains detailed information how to generate matrix file from results of FASTA/BLAST search: http://www.atgc.org/MatrixMining/ Feedback and comments are very welcome. Alexander Kozik Department of Vegetable Crops Asmundson Hall University California at Davis tel: (530) 752-1742 email: akozik@atgc.org --- .